XLOC_025759 (camsap3)


Basic Information

Item Value
gene id XLOC_025759
gene name camsap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53352018 ~ 53449437 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050630
atatcattttgtatttattttttatttacttccaGTGTTTTGCTTGAAATATCTACTGTATCATAAAGTGACAAAATAGCTCATAACTTTAAACCAAATCAAATCTTTCTTgtataagagtaaaaaaaaaatcacacaaaagaAATGAAGAAATTGCTGCAGTTTACTTTGCGCTCATTATAATCCCTTGACGATAATATGTTATTTGGCCGTTCTTAATGACTAATGTTTCCCTCTCGCCCTTCTGGGCAAGTTCTACCTGTCCTGCACCTGTTCCAATGAGTTACAGCGCCTTCCTACCTGCTGCTTAACTTCACATGCTTAAGTCCCACCCTGTTAACTCTGCGCTGCCACCTGATTGGTCGCCCGGCGGGATGATTGACAGGAGTATGGAGTACCTGGAAATCAGTCGCTTGCGGAGCGCGTCAGCCAGAACGATGTGGACTCTGAAGCGGGGTCGAAAACAGTGAAACCATCTCCAGGAATACCGCTAAATCTGTCGCTCCGCTAGACTAAAACAACTCTACACACCCGCCAGCTCCATTGGATGTATATAAAGAAAACCGGGAAAGGATTATATAGTACAAGACTTTATTTTTCGCCGCAACGCTGACCGAGATATCGGCCTCTCGCAGTCCCAATGCTGTGCTCGCGTGAAAGAGAAAGGATGAGTGTTTGATTTCGGCTTCGCATCGGCTTCCTCTCGTTTTCCCGGCCCGTCTGTGTGTTTGGACGTACTATGGTGGACTCCAATGCAATGAGGAAGACTTTTGTGGTCCCGGACATCAAGCCATTGGATCAGTATGACCTGACCAGAGCCAGGATCTGCGCCAGTGTCGGGTGGCTGCTGGCGAAATCCTACAGCAATGCAGAGAATGTCCCGGTGGAGCTGCGAGACCCGTTCTATTGTGATCAGTATGAGCAAGAGCACCTGAAGCCCCCTGTTACGCGTCTGCTGCTGTCTCCTGAACTCTACTGTCGCACTTATGGTCTTCTGCTGGGTGGGAGCCCGGGGGCCGAGGGGCCGCCCAAAGACATCCCAGCACTCTTACAGCTCCTGGGCCGAAAGGGCTTGGCACCCAAAGACCAGAATGTACCAGTGACAGAGTCAGAGCTCCGACAGAAGCCCATCAAAATGAGTGCCCACTTGGAGTTGATAGATGCCTTAATGGCAGTGGGTGCCATGGAGACGGTGAGCACAGTCTTGGCGAGGAGCGGATCGGAGTTATTGGGTACAGATACGACATGGGACAGAGCCCTGCTTTGCTGGGTGAAGATGCTGAATCAAAAATTGAAGGAACAAACTGAAGGTACACAAATCGACACATCTCAGTCTGCTGAACCACAGCCTGTTCAACCCTCGATCCGGTACAGGAAGGACAGGATGCAGTCTAAGCTCAAACCTTGTTTTCCTGTGGTAAACGAAGTGAAGGATCTCTCAAACGGATGTGCCATTGCTGCTGTTATTCACTATTACTGTCCTAGTCTACTGAGATTAGAAGATGCATGTATGAAGGACTCCATGACTGTGGCTGACAGCTTGTACAACCTACAGCTGATTCGAGAGTTCTGTGACAGTTGCCTGAAGAGCTGCTGCCCTCTAGTGTTGGAAGATTTACTCTACAGCCCCTCAGAATTAAAGACAAATATACTAAGCTTTCTGGCAGAGCTCTTATATTGGTTTGAGGTCTCAAAGCCAGAGTTTGTTCAGCCCCTGCAGGACTCAGTGACTGAAACTTCTGGAAAGATCAATAATGGGAACAGTGGATCCAGCAATGGTGGATCACCTTCTATCTTCAAAAAGCCTTTCCTCCCCATCTCTTCCCCTGTGACTGTAGCAACAGGATCTCTGACTCAGTCTACCTCAATGTCTCATGTAGAGGCAGCAGGACGATCATGGAGTAAGAAACCACTTAGTCGTCCGCTGTCTGCTGTGTCCTTCAGTATCCCCTTTGGTCTGGATAGTGATGTGGACATTGTAATGGGGAACCCTGTTATTACTCGGTCTGTCAGCTCGGACAATCTCAACCCTGGTGGCCAATCCATGACACGTGTCCCCTACACGCCTCCAGAGGACCTTAGCCACTTGCTGAGTAAGGCCCCTGGGCCTAATGGCCCTCAGAGAGCTTCCTGGGGTATTCGAACTCGTCCAATGCTGGCTGAAGAGAATGGCATTGAGGAAAGTGAGACGGGAGAGCTTCCAACCATTGAAGAGGCTCTGCAGATCATCCACAATGAAGAGAAGATGGAGCCTCGCCTTCACCCTGAGGGGGCACCCGATGGTTTCTATCTGCATTCACCAGATGATCCAGCTAACGCAAGACTCAATGGCAGCCCAGTGACTCTCAGCTCTTCAGCCCCATCCCGCTCAGGAATGCTCTACCACAGAACACCAGGAGTCCCCCCAGAGCCCAGCCGCACCAGACATCCATCAGAAGGATCAAGAGATGACGACTCTGTATTAAGAGATGGAAGCGTGGATTCAGATGCTTCCGAAGATCTTCCAAAAACCCACTCCACCCCTGTCACACCCGCTTCCGGTCCTCGCATAACACAACCTCGTGGTGAAGAGACGCCGGACAGCGGTGTGAAGATGACAAACTTTGCAGAGAGAAAGAAGAAGCTGGTTCCAGAACAGGTACGGCCCAGTGAGCCAGAGGCACCACAAATGACAACGTGGGCCAAGAAATCAGAGGAGAGTCCCAGTAAGAGTCCTGCTCTCAGCACTGAAATGTCAGAGCTAGGGGCCAGGCTGGAGGAGAAGCGGAAGGCCATAGAAGCTCAGAAGAAACGTATTGAAGCCATCTTTGCCAAACACCGGCAACGGCTTGGAAAAAGTGCCTTCCTACAGTTAAAGAAGGAGCAAGAGGATGGAGATGGTGAAGAAGGACATCATGGGGGTGGCAGTGCCACCTCCGTAGAAGACGACCTTAGCCGTTTAGCACTGGAGGAGAAACTGGCACGTTTGGAGAGGGAGGAACAGCAGGAGGAGCAACAGGAGGAACAGTTGAACAAGGGCCCATTAGTAGAAGAAGCGGGGAATGTTAAGCCTTCTGTCAAACAGGACAAGCATGGAGAGAAACAAAAACCTGAAGTAGAAACTCCTGGAGGGAAAGGCACAGCCCCACTGGGTGAATATAACAATGCTGTTTCTAAACTAAGTGCTGCACTCAGTTCTCTTCAAAATGATATGCAGCGCCTCTCAGAGCAGCAGAACCAGCTGATGAAGAAAAAGGCAACTCCTACCAAGCAGGCTTGGGTCATCCCACCCAGCTCCAAACCTTCAACGACTACACCTCGTTTGTCAAGAGAGTCCACTCGTGAACTTTCTTCAGCCACCTCCTCTCCTTCCCCCTCTCGAAAGATTTCAGGTCACACCGGTCCCCCAAAATCGCCTGGAGCCCATCGTAGGGCACAGTCTGCACCTCCGAAGAGCCCCAAAGTGCATCACCACCCTCGACCTGCAGAGCTCAAGACACCCATTTCCACTCGAGTCATAACTCCTCCTCAAAGTGTGGACAACATTCCTCATTTACGAAGAGTGTCTCCATGGCAATGCAGGGATCAGAACTCGTCCTCCTTCAGCATAGGTACACCCAGTCAGAGTGAGTCCCGCTCTGCCTCATCCCTGGCCAGACCAGAGGATAATTTCTCAGACACAGGCTCCAGTGAAGACCAAACCATCTTCAGTATGGACTTAGATGGTGGATCCTCACAGGTTCTGCCCCGAAAGGAGCGTCAGGGTGGTGGCAGCAGCTCAGGAGCTCCTTCTGAGTGCTCTTTTGAGAGTGATATTCCTGTAGCAGCTCTCAACGGAAAGCGTGGTAGTCTTATCGAGATATCATTGTCATCTCTCAAAGCATTAGATGGGGAAGAGGCAGATCAGAGCCAAGATATCTTCTCAGACTCTATGAGCGACCAAACAGAGCCAGAAACAAGGGGTGGAGTTGGATTCTTCTTTAAGCAGGATGAAGCTCGACCAGAGGATGAGATGGAGAAGAGAAGAGCCGCATTACTTGAGAAACAACAGAAGCGAGCAGAGGAGATGAAAAGACGAAAACAGGAacaagagagagaaagggaggcAAGCAGGTCATCTTCAGTGGATGAGCCTCGCAGAGGAGAGGAGAGACCCCAGACACCTTCTACTCCCCCACCTCCCCGCACCCCTCCACCAGAGGGCACTCCTCAGCGGCGTGGTGACTTCACCCGCCAGGAATATGAACGGCGGCACCAGCTGAAAATAATGGAGGATCTAGATAAAGTCCTCCGCCAGAAACCCACTACTGTCAGAGGGGTCAAGAAGCAGAGGCCCAAAACTGTGTTTAGAGATGACTCAGACCTCTCCCGCAGCCCTGCCAAAGGGTTTATGGGTTCAAGACTAAATAAAGTTTACTCCCATTCAACAATGAATCTCTCCTCCATGGCCAATGACAGTGGGACATTAACTGTCAGAAAATCTCCAAGTCGTTCTCATTCACCTTCCAGACTGCTGTCTCCAGGACGTCTTGCTGCACAGAATGGGGACTGGGATAATGCATCTACTATTTCATCCCCAGCCTCTATCCCAGAATACACTGGACCTAAACTCTACAAGGAGCCAAGCTTCAAGTCCAATAAGTTCATTATCCATAATGCCATCTCGCGCTGTTGTTTGGCAGGAAAGGTTAACGAACCACAGAAAAACAAGATTGTAGAGgaaatggagaaaagtGCTGCAAACCATTTCCTCATCCTGTTCCGGGACGCCAGCTGTCAATTCCGGGCAGTTTACACCATGAACCCTGAGACCGAGGAGATGGTTCGGCTCGTTGGTATTGGCCCACGAGTAATCAGTCCCATCATGGTGGAGTCGATCTACAAGTACAGCTCTGACCGCAAGCAGTTCACAGCCATCCCGTCCAAAACCATGTCCATGAGTGTGGATGCCTTCACCATTCCCAGCCACCTCTGGGAGCGCAAGCGCCCGGGAACCCCAAAGAAGCTCGGGACCCCAAAATAA

Function

symbol description
camsap3 Predicted to enable calmodulin binding activity; microtubule binding activity; and spectrin binding activity. Predicted to act upstream of or within neuron projection development. Predicted to be located in cytoplasm and microtubule. Orthologous to human CAMSAP3 (calmodulin regulated spectrin associated protein family member 3).

GO:

id name namespace
GO:0031175 neuron projection development biological_process
GO:0005874 microtubule cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0030507 spectrin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-811 Predicted to enable calmodulin binding activity; microtubule binding activity; and spectrin binding activity. Predicted to act upstream of or within neuron projection development. Predicted to be located in cytoplasm and microtubule. Orthologous to human CAMSAP3 (calmodulin regulated spectrin associated protein family member 3).

Ensembl:

ensembl_id ENSDARG00000059475

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050630 True 5002 mRNA 0.50 17 53352018 53449437

Neighbor

gene id symbol gene type direction distance location
XLOC_025758 xab2 coding upstream 1471 53317040 ~ 53350547 (+)
XLOC_025757 stxbp2 coding upstream 77733 53240562 ~ 53274285 (+)
XLOC_025756 pet100 coding upstream 120674 53228684 ~ 53231344 (+)
XLOC_025755 brd4 coding upstream 127738 53116172 ~ 53224280 (+)
XLOC_025754 pbx4 coding upstream 275549 52999962 ~ 53076469 (+)
XLOC_025760 zmp:0000001048 coding downstream 62499 53511936 ~ 53522208 (+)
XLOC_025761 NA coding downstream 77528 53526965 ~ 53652401 (+)
XLOC_025762 col5a3a coding downstream 323819 53773256 ~ 53919463 (+)
XLOC_025763 olfm2a coding downstream 563271 54012708 ~ 54238460 (+)
XLOC_025764 CU633748.1 coding downstream 618086 54067523 ~ 54067639 (+)
XLOC_025429 BX649540.1 misc upstream 23102982 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 468594 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 523012 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 731843 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 959813 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 962979 52377578 ~ 52389039 (+)
XLOC_025765 NA non-coding downstream 661952 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 821266 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 834330 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01137145_01178626 CAMSAP3 coding CI01000113 null 1136997 ~ 1178626 (-)