LOC110529662 (LOC106571455)


Basic Information

Item Value
gene id LOC110529662
gene name LOC106571455
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24739057 ~ 24795416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985111.1
ATAGGTTAACTGTGGTTTGAAGACACCGTTTATTACGAGTGCCAGGAGTGTTGCGGAGCTCCTATTTTAATACCGCCACATTGTAGCCAACCAGATTATCTTTAGTAATTTGCCTGTCCAAAGCATTCTTCCTATCCGGGATGTTTTTGAGCATAATTTGGATCTCTTGATATCCATTTCAAGACATCGCTTGgatttatattatttatattcttGTTGTGTAATCTCTGCATTGAAATGTCTGTCGTTTTCATCAAGTCTAGGCCACTGGTCTAATTTCCAATTAAGAAATTGCGCCGCAAAACGTTTCGACTTCAAAGGGAGACCTTGGATGCGCGTTTCGTTGGAGACGTTCTGCAACAATTTGTTGCAAACATTAAAAGCAAAGTGATGGATGGAGTCGTTATCACCTCGGTTTGCCATAGCACTTTAATCATTTCGTTTTTTTAAGTCCTCTTTTCGTCCTCTTTTCGTGTATTCAATTATGTTCACTTTCGCTGCCTTTTGCTATATGCTGTCACTGGTCCTCTGTGCTTCCCTGATATTCTTTGCGATATGGCATaTAACAGCCTTTGATGAACTGCAGGCAGACTTTAAGGTCCCCATCGATCAGGGCAATCCACTCCATGCGAGAGAGCGACTCCGGAACATTGAGAGGATTTGCTGCCTGCTGAGAAAGttgGTGCTTCCAGAGTATTCTATCCATGGGCTGTTCTGTATCATGTTCCTGTGTGCCCAGGAGTGGCTGACAGTAGGCCTCAACATCCCTCTGTTCTTCTACAACACATGGAGGTACTTCCACAGCCCCACAGACACTAAGGAGCTCCTCTACGACCCAGCCTCGGTCATGAACGGGGACACACTCAAGTTCTGCCAAAAAGAGGCCTGGTGCAAGATGTCCTTCTTTGTCCTGTCTTTCTTCTACTATCTCTACTGTATGGTCTACTCCTTGGTAACCTCATAACAGCAGAACTCTCAGTATTTGAGCCATCCTCCGGATATCAGAGACTGTTTTCTGGAATTCAAACTAGCTAGCACAAAAACCAACTTTGCAGCAAAAAATAGCACTTTGGGTCACAACTTTTCTGTTTCGTCAGAAGGACAGTCGGTGGGTCTGGTCTGGGGGGAAGGGAAGAATTTCAGCTCCAGTCCCCATTGTCTCCTCAATGTATGTAAAGGGACATTACTGTTTACAGTTCTCTATAGGTCAAAAGTCCTTTATGAGTCACAGTGACCACCATATCTACTTTTGTCCGTCACTGCCCGGCTAATGTCTGTACTTACAGCCTGTCCTGTCCTGGAGAAGTACAGTAGCATCACCACTACCGTAGTAGGGTACACAGTAGTGTTTGCACAGTTTGTCTCAGGCACAGCACATAgaaacacagcacagcacattcGTGTTTGTCATCGGGACAAACAGGTCTTCTTCTTCACCCATCTGCCCTTAGAGTCTCACCGATAGTAGCTTCTTCTTCACTGGTGGGAAGGGGAGATGACACATCCTGTACAGAGACATGGTGAACCTTCTGTTCAGGGACAAGGAAACCGGGTCCGCGAATGTTGCATTTTTACCTGCTGCAATACAATACATGGcctgtgtgtttatatacattacatacctGTATGTGAATGGCTTTTGTGATGTGTGCATTTTGTGTATTCTTAACAAAATCATTTCTAATGGAAATATGATCTACGAAGAATCATATACAAATGGAACATTGTGTGATTCTCTGTGGTTGTAGTGTtgtttggtagagaaattaaagcTTGTTTTTTAGAACTAGAAAAGCAGTAATTCTTCGCACAGTAGTGTAGGCCTATATCATTTTCTTGCCAAATATTTGCGATGTTTAGTTGTGTTTCAATACTCTATAGTCTACCCAAATGAGCAAAGGTATCACTGTTTCCATAATGGACCGAATGTGGTACTTATTCATTCACTTAAATTATTCATAGTCATTTAAAATGAATTGTTTCCCTTCACACTTTGTCCAAAATACTTTTCAGCAAATATAAGTGAATGGCATATCAGCCTCCACTGTAAGATGACTAATATATCAACTGAATGACACTGTTAATGTTCTAACTACCCCCTCTGTCATTACCATTAGCTAGCAGATGCTGCCAATAATGAAACAGTGTCTGAAAACAGCTATGGACTTCAGAGCTTTTGGCAATGCTGTTTCATTTGATTGTCTTTCAGAGAATTCATTGAGAATTCAATGCTGTCGGTTTGCCGCATAGTTCGTAATCATGCATCTTTGCGCAGAAGTTTTGCATTAACCTTTACTCAAGGACAAGACAGGAATGCCCATATTGTTGTTTTCTTATTTAAGAGCATTTTGTATGTTTGCTGTGTATGTGTCAACCTAAGATGAATTTAAATAATTGTTTATGAAATAAAGTATGACTATTTTAAAATGTGA
>XM_036985110.1
TATAGGTTAACTGTGGTTTGAAGACACCGTTTATTACGAGTGCCAGGAGTGTTGCGGAGCTCCTATTTTAATACCGCCACATTGTAGCCAACCAGATTATCTTTAGTAATTTGCCTGTCCAAAGCATTCTTCCTATCCGGGATGTTTTTGAGCATAATTTGGATCTCTTGATATCCATTTCAAGACATCGCTTGgatttatattatttatattcttGTTGTGTAATCTCTGCATTGAAATGTCTGTCGTTTTCATCAAGTCTAGGCCACTGGTCTAATTTCCAATTAAGAAATTGCGCCGCAAAACGTTTCGACTTCAAAGGGAGACCTTGGATGCGCGTTTCGTTGGAGACGTTCTGCAACAATTTGTTGCAAACATTAAAAGCAAAGTGATGGATGGAGTCGTTATCACCTCGGTTTGCCATAGCACTTTAATCATTTCGTTTTTTTAAGTCCTCTTTTCGTCCTCTTTTCGTGTATTCAATTATGTTCACTTTCGCTGCCTTTTGCTATATGCTGTCACTGGTCCTCTGTGCTTCCCTGATATTCTTTGCGATATGGCATaTAACAGCCTTTGATGAACTGCAGGCAGACTTTAAGGTCCCCATCGATCAGGGCAATCCACTCCATGCGAGAGAGCGACTCCGGAACATTGAGAGGATTTGCTGCCTGCTGAGAAAGttgGTGCTTCCAGAGTATTCTATCCATGGGCTGTTCTGTATCATGTTCCTGTGTGCCCAGGAGTGGCTGACAGTAGGCCTCAACATCCCTCTGTTCTTCTACAACACATGGAGTAGGTACTTCCACAGCCCCACAGACACTAAGGAGCTCCTCTACGACCCAGCCTCGGTCATGAACGGGGACACACTCAAGTTCTGCCAAAAAGAGGCCTGGTGCAAGATGTCCTTCTTTGTCCTGTCTTTCTTCTACTATCTCTACTGTATGGTCTACTCCTTGGTAACCTCATAACAGCAGAACTCTCAGTATTTGAGCCATCCTCCGGATATCAGAGACTGTTTTCTGGAATTCAAACTAGCTAGCACAAAAACCAACTTTGCAGCAAAAAATAGCACTTTGGGTCACAACTTTTCTGTTTCGTCAGAAGGACAGTCGGTGGGTCTGGTCTGGGGGGAAGGGAAGAATTTCAGCTCCAGTCCCCATTGTCTCCTCAATGTATGTAAAGGGACATTACTGTTTACAGTTCTCTATAGGTCAAAAGTCCTTTATGAGTCACAGTGACCACCATATCTACTTTTGTCCGTCACTGCCCGGCTAATGTCTGTACTTACAGCCTGTCCTGTCCTGGAGAAGTACAGTAGCATCACCACTACCGTAGTAGGGTACACAGTAGTGTTTGCACAGTTTGTCTCAGGCACAGCACATAgaaacacagcacagcacattcGTGTTTGTCATCGGGACAAACAGGTCTTCTTCTTCACCCATCTGCCCTTAGAGTCTCACCGATAGTAGCTTCTTCTTCACTGGTGGGAAGGGGAGATGACACATCCTGTACAGAGACATGGTGAACCTTCTGTTCAGGGACAAGGAAACCGGGTCCGCGAATGTTGCATTTTTACCTGCTGCAATACAATACATGGcctgtgtgtttatatacattacatacctGTATGTGAATGGCTTTTGTGATGTGTGCATTTTGTGTATTCTTAACAAAATCATTTCTAATGGAAATATGATCTACGAAGAATCATATACAAATGGAACATTGTGTGATTCTCTGTGGTTGTAGTGTtgtttggtagagaaattaaagcTTGTTTTTTAGAACTAGAAAAGCAGTAATTCTTCGCACAGTAGTGTAGGCCTATATCATTTTCTTGCCAAATATTTGCGATGTTTAGTTGTGTTTCAATACTCTATAGTCTACCCAAATGAGCAAAGGTATCACTGTTTCCATAATGGACCGAATGTGGTACTTATTCATTCACTTAAATTATTCATAGTCATTTAAAATGAATTGTTTCCCTTCACACTTTGTCCAAAATACTTTTCAGCAAATATAAGTGAATGGCATATCAGCCTCCACTGTAAGATGACTAATATATCAACTGAATGACACTGTTAATGTTCTAACTACCCCCTCTGTCATTACCATTAGCTAGCAGATGCTGCCAATAATGAAACAGTGTCTGAAAACAGCTATGGACTTCAGAGCTTTTGGCAATGCTGTTTCATTTGATTGTCTTTCAGAGAATTCATTGAGAATTCAATGCTGTCGGTTTGCCGCATAGTTCGTAATCATGCATCTTTGCGCAGAAGTTTTGCATTAACCTTTACTCAAGGACAAGACAGGAATGCCCATATTGTTGTTTTCTTATTTAAGAGCATTTTGTATGTTTGCTGTGTATGTGTCAACCTAAGATGAATTTAAATAATTGTTTATGAAATAAAGTATGACTATTTTAAAATGTGA
>XM_036985108.1
GCTATAGGTTAACTGTGGTTTGAAGACACCGTTTATTACGAGTGCCAGGAGTGTTGCGGAGCTCCTATTTTAATACCGCCACATTGTAGCCAACCAGATTATCTTTAGTAATTTGCCTGTCCAAAGCATTCTTCCTATCCGGGATGTTTTTGAGCATAATTTGGATCTCTTGATATCCATTTCAAGACATCGCTTGgatttatattatttatattcttGTTGTGTAATCTCTGCATTGAAATGTCTGTCGTTTTCATCAAGTCTAGGCCACTGGTCTAATTTCCAATTAAGAAATTGCGCCGCAAAACGTTTCGACTTCAAAGGGAGACCTTGGATGCGCGTTTCGTTGGAGACGTTCTGCAACAATTTGTTGCAAACATTAAAAGCAAAGTGATGGATGGAGTCGTTATCACCTCGGTTTGCCATAGCACTTTAATCATTTCGTTTTTTTAAGTCCTCTTTTCGTCCTCTTTTCGTGTATTCAATTATGTTCACTTTCGCTGCCTTTTGCTATATGCTGTCACTGGTCCTCTGTGCTTCCCTGATATTCTTTGCGATATGGCATaTAACAGCCTTTGATGAACTGCAGGCAGACTTTAAGGTCCCCATCGATCAGGGCAATCCACTCCATGCGAGAGAGCGACTCCGGAACATTGAGAGGATTTGCTGCCTGCTGAGAAAGttgGTGCTTCCAGAGTATTCTATCCATGGGCTGTTCTGTATCATGTTCCTGTGTGCCCAGGAGTGGCTGACAGTAGGCCTCAACATCCCTCTGTTCTTCTACAACACATGGAGTAGGTACTTCCACAGCCCCACAGACACTAAGGAGCTCCTCTACGACCCAGCCTCGGTCATGAACGGGGACACACTCAAGTTCTGCCAAAAAGAGGCCTGGTGCAAGATGTCCTTCTTTGTCCTGTCTTTCTTCTACTATCTCTACTGCGTGTACTGGACCGGACCTTCCCCTAGTATATGGTCTACTCCTTGGTAACCTCATAACAGCAGAACTCTCAGTATTTGAGCCATCCTCCGGATATCAGAGACTGTTTTCTGGAATTCAAACTAGCTAGCACAAAAACCAACTTTGCAGCAAAAAATAGCACTTTGGGTCACAACTTTTCTGTTTCGTCAGAAGGACAGTCGGTGGGTCTGGTCTGGGGGGAAGGGAAGAATTTCAGCTCCAGTCCCCATTGTCTCCTCAATGTATGTAAAGGGACATTACTGTTTACAGTTCTCTATAGGTCAAAAGTCCTTTATGAGTCACAGTGACCACCATATCTACTTTTGTCCGTCACTGCCCGGCTAATGTCTGTACTTACAGCCTGTCCTGTCCTGGAGAAGTACAGTAGCATCACCACTACCGTAGTAGGGTACACAGTAGTGTTTGCACAGTTTGTCTCAGGCACAGCACATAgaaacacagcacagcacattcGTGTTTGTCATCGGGACAAACAGGTCTTCTTCTTCACCCATCTGCCCTTAGAGTCTCACCGATAGTAGCTTCTTCTTCACTGGTGGGAAGGGGAGATGACACATCCTGTACAGAGACATGGTGAACCTTCTGTTCAGGGACAAGGAAACCGGGTCCGCGAATGTTGCATTTTTACCTGCTGCAATACAATACATGGcctgtgtgtttatatacattacatacctGTATGTGAATGGCTTTTGTGATGTGTGCATTTTGTGTATTCTTAACAAAATCATTTCTAATGGAAATATGATCTACGAAGAATCATATACAAATGGAACATTGTGTGATTCTCTGTGGTTGTAGTGTtgtttggtagagaaattaaagcTTGTTTTTTAGAACTAGAAAAGCAGTAATTCTTCGCACAGTAGTGTAGGCCTATATCATTTTCTTGCCAAATATTTGCGATGTTTAGTTGTGTTTCAATACTCTATAGTCTACCCAAATGAGCAAAGGTATCACTGTTTCCATAATGGACCGAATGTGGTACTTATTCATTCACTTAAATTATTCATAGTCATTTAAAATGAATTGTTTCCCTTCACACTTTGTCCAAAATACTTTTCAGCAAATATAAGTGAATGGCATATCAGCCTCCACTGTAAGATGACTAATATATCAACTGAATGACACTGTTAATGTTCTAACTACCCCCTCTGTCATTACCATTAGCTAGCAGATGCTGCCAATAATGAAACAGTGTCTGAAAACAGCTATGGACTTCAGAGCTTTTGGCAATGCTGTTTCATTTGATTGTCTTTCAGAGAATTCATTGAGAATTCAATGCTGTCGGTTTGCCGCATAGTTCGTAATCATGCATCTTTGCGCAGAAGTTTTGCATTAACCTTTACTCAAGGACAAGACAGGAATGCCCATATTGTTGTTTTCTTATTTAAGAGCATTTTGTATGTTTGCTGTGTATGTGTCAACCTAAGATGAATTTAAATAATTGTTTATGAAATAAAGTATGACTATTTTAAAATGTGA
>XM_036985109.1
GCTATAGGTTAACTGTGGTTTGAAGACACCGTTTATTACGAGTGCCAGGAGTGTTGCGGAGCTCCTATTTTAATACCGCCACATTGTAGCCAACCAGATTATCTTTAGTAATTTGCCTGTCCAAAGCATTCTTCCTATCCGGGATGTTTTTGAGCATAATTTGGATCTCTTGATATCCATTTCAAGACATCGCTTGgatttatattatttatattcttGTTGTGTAATCTCTGCATTGAAATGTCTGTCGTTTTCATCAAGTCTAGGCCACTGGTCTAATTTCCAATTAAGAAATTGCGCCGCAAAACGTTTCGACTTCAAAGGGAGACCTTGGATGCGCGTTTCGTTGGAGACGTTCTGCAACAATTTGTTGCAAACATTAAAAGCAAAGTGATGGATGGAGTCGTTATCACCTCGGTTTGCCATAGCACTTTAATCATTTCGTTTTTTTAAGTCCTCTTTTCGTCCTCTTTTCGTGTATTCAATTATGTTCACTTTCGCTGCCTTTTGCTATATGCTGTCACTGGTCCTCTGTGCTTCCCTGATATTCTTTGCGATATGGCATaTAACAGCCTTTGATGAACTGCAGGCAGACTTTAAGGTCCCCATCGATCAGGGCAATCCACTCCATGCGAGAGAGCGACTCCGGAACATTGAGAGGATTTGCTGCCTGCTGAGAAAGttgGTGCTTCCAGAGTATTCTATCCATGGGCTGTTCTGTATCATGTTCCTGTGTGCCCAGGAGTGGCTGACAGTAGGCCTCAACATCCCTCTGTTCTTCTACAACACATGGAGGTACTTCCACAGCCCCACAGACACTAAGGAGCTCCTCTACGACCCAGCCTCGGTCATGAACGGGGACACACTCAAGTTCTGCCAAAAAGAGGCCTGGTGCAAGATGTCCTTCTTTGTCCTGTCTTTCTTCTACTATCTCTACTGCGTGTACTGGACCGGACCTTCCCCTAGTATATGGTCTACTCCTTGGTAACCTCATAACAGCAGAACTCTCAGTATTTGAGCCATCCTCCGGATATCAGAGACTGTTTTCTGGAATTCAAACTAGCTAGCACAAAAACCAACTTTGCAGCAAAAAATAGCACTTTGGGTCACAACTTTTCTGTTTCGTCAGAAGGACAGTCGGTGGGTCTGGTCTGGGGGGAAGGGAAGAATTTCAGCTCCAGTCCCCATTGTCTCCTCAATGTATGTAAAGGGACATTACTGTTTACAGTTCTCTATAGGTCAAAAGTCCTTTATGAGTCACAGTGACCACCATATCTACTTTTGTCCGTCACTGCCCGGCTAATGTCTGTACTTACAGCCTGTCCTGTCCTGGAGAAGTACAGTAGCATCACCACTACCGTAGTAGGGTACACAGTAGTGTTTGCACAGTTTGTCTCAGGCACAGCACATAgaaacacagcacagcacattcGTGTTTGTCATCGGGACAAACAGGTCTTCTTCTTCACCCATCTGCCCTTAGAGTCTCACCGATAGTAGCTTCTTCTTCACTGGTGGGAAGGGGAGATGACACATCCTGTACAGAGACATGGTGAACCTTCTGTTCAGGGACAAGGAAACCGGGTCCGCGAATGTTGCATTTTTACCTGCTGCAATACAATACATGGcctgtgtgtttatatacattacatacctGTATGTGAATGGCTTTTGTGATGTGTGCATTTTGTGTATTCTTAACAAAATCATTTCTAATGGAAATATGATCTACGAAGAATCATATACAAATGGAACATTGTGTGATTCTCTGTGGTTGTAGTGTtgtttggtagagaaattaaagcTTGTTTTTTAGAACTAGAAAAGCAGTAATTCTTCGCACAGTAGTGTAGGCCTATATCATTTTCTTGCCAAATATTTGCGATGTTTAGTTGTGTTTCAATACTCTATAGTCTACCCAAATGAGCAAAGGTATCACTGTTTCCATAATGGACCGAATGTGGTACTTATTCATTCACTTAAATTATTCATAGTCATTTAAAATGAATTGTTTCCCTTCACACTTTGTCCAAAATACTTTTCAGCAAATATAAGTGAATGGCATATCAGCCTCCACTGTAAGATGACTAATATATCAACTGAATGACACTGTTAATGTTCTAACTACCCCCTCTGTCATTACCATTAGCTAGCAGATGCTGCCAATAATGAAACAGTGTCTGAAAACAGCTATGGACTTCAGAGCTTTTGGCAATGCTGTTTCATTTGATTGTCTTTCAGAGAATTCATTGAGAATTCAATGCTGTCGGTTTGCCGCATAGTTCGTAATCATGCATCTTTGCGCAGAAGTTTTGCATTAACCTTTACTCAAGGACAAGACAGGAATGCCCATATTGTTGTTTTCTTATTTAAGAGCATTTTGTATGTTTGCTGTGTATGTGTCAACCTAAGATGAATTTAAATAATTGTTTATGAAATAAAGTATGACTATTTTAAAATGTGA

Function

NR:

description
PREDICTED: protein cornichon homolog 3-like isoform X3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985111.1 False 2432 mRNA 0.41 6 24739057 24795413
XM_036985110.1 False 2436 mRNA 0.41 6 24739057 24795414
XM_036985108.1 False 2467 mRNA 0.41 7 24739057 24795416
XM_036985109.1 True 2464 mRNA 0.41 7 24739057 24795416

Neighbor

gene id symbol gene type direction distance location
srp09 srp09 coding downstream 289722 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 292117 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 300410 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 327223 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 341120 24297942 ~ 24397937 (-)
LOC110529665 LOC106571552 coding upstream 197119 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 265271 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 481040 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 494793 25290209 ~ 25294380 (-)
LOC110529673 LOC106571464 coding upstream 500984 25296400 ~ 25304057 (-)
G688605 NA non-coding downstream 6961 24731830 ~ 24732096 (-)
G688584 NA non-coding downstream 25803 24712988 ~ 24713254 (-)
G688583 NA non-coding downstream 26303 24712465 ~ 24712754 (-)
G688564 NA non-coding downstream 37124 24701506 ~ 24701933 (-)
G688491 NA non-coding downstream 86163 24652530 ~ 24652894 (-)
G689056 NA non-coding upstream 132741 24928157 ~ 24928433 (-)
G689069 NA non-coding upstream 160082 24955498 ~ 24955718 (-)
G689070 NA non-coding upstream 161146 24956562 ~ 24956818 (-)
G689073 NA non-coding upstream 164404 24959820 ~ 24960028 (-)
G689082 NA non-coding upstream 181595 24977011 ~ 24979552 (-)
G688922 NA other downstream 2017 24736046 ~ 24737040 (-)
G688537 NA other downstream 57631 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 108008 24629554 ~ 24631049 (-)
G688366 NA other downstream 313504 24425063 ~ 24425553 (-)
G689656 tlr5m other upstream 580706 25376122 ~ 25407347 (-)
G689685 NA other upstream 615407 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 722150 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 868749 25664165 ~ 25664665 (-)

Expression


Co-expression Network