LOC110529663 (spats1)


Basic Information

Item Value
gene id LOC110529663
gene name spats1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24797849 ~ 24805466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612081.2
GATgagcccttgaacaaggcacttaaccctaattgctcctgtaagtcgttctggataagagcatctgctaaatgactcaaatgtaaatgtaatagtAGATATTTTATTTGACCTCTTGAGATAGggaaacatgtttttattaagttgaacatttGCTCTTTATGACAGATTGTTACAATTGGGAGAAATAACACGTTCTTCTCTCACGAAGTTACACTcctcaaaaggcacctaattggtggaacgacccaccCCTCTCAGAGAAGTTTGTCATTCTCTCCTAGCAACAGCTTGGGTCGTTATATATGCTACAAACGTGTCATACAGGCCTATTGTTTCCAACAACCTTTTTGGGCGAGACGCATTAAACTTAATCTAGATAACATGAATGCCCGCTGCAAAACACGGTCAAAGTAAAATAGCTATCAGGATACGCTTCCTTGAAATATAAAGTAATAAACTCGTGCAAAAGGTGGTTCCCATTCAGCATGTGTTCCTTTGGCGCGTTGGACAAGCTCGGACCCCACGGCAGACACTATTCACATGGAGGAGAGATACATTACAGACCGCACATTCAGCACATAGAGCCCAACCTAACAGAGTGTGACCTTGACTGGAGCTCTGGTCTGCGGTGGCTGCCTGCACCTCGCTACAGTGATGCTCCACTCCCTCACATCAAATTGATCAAGTTCCCTGAAGAGACCAGACTGCTCAGGTCCTTCCCACAGGCCAACATGGTGTCCCAGTCTGAGTGGACGTTTTATCCCAACTTTGGTCAGCCCAGAACCTTCCATGTTGGCAAACGCTGTTTGCTGGAGGGAGGTCACCATTATAGGACCATACGGTGTTCTTCAGAGAGAACTCTGGAGGTCACCATCGGGAGGAAAAAACAAGCCAGGTTTACCTGCCATTCTGCACCTGGTTCTAGACCCTATCTAACACCTGAGTACAGTCCTGACTTTCACAAGTTTGGATCAACATTACCAACAACACATTTTGGGTCACTGACCTTCAGTGCAGATACATTCGTTCCTCTTCAGCCACCTCCAAAAAAGACATGTATTCCATATGTAGcgaggaagaggatggaggaCAGGGAGGCAGACATACTGGAAGTGAAGAAGCTGAGTAAATGGAGGCCTGCACCGGTCATATTCAAAACTGTGCTGGACAACTGACATGTCAAAATGTTTTTTGGATGAATGAGGAGAAATGGATAACAATTCCAAACTGTATATCATGATCATTCAGCATGATTACAGCCACGTGGTTTTGATTCTACTGTAGTTTGATAAGGACGTTTGGTGGGAGGGGGGGATCAATGATGTAATAAAGTGTGACTAATTGTCATGACATCATTTGGAGCTTTTGCCATCACTATTCACTTTTGAACAATTGGGTTATGCAATTTGCTGAGGGGAGATAAGCAACAATAAGCCAAGCAGGGAAAAACAGTTCCCAGGTGGCCTGACTTTGCTGAGTTCCAAAAGCAGTTAGGTCAGCAACAGTTGATAACCTGACCTCTGTTTTGCCTTATAGTCTGGCAGAGGTGCATCGCATAGATTTCCTTAATTCCCAGGGGAAGATAAGTGGTGGGCTCAATCCCTCATTCAGCAAAACAACACTGCTGATCCCATTCAGGATAGACAGGGACAACTAGGGCTGCTACTATTAGCTGCTTAGTCACTTCAGCATGCCTCAAGGTTAGGGAGGGGGTGTGTACAGGTTTTTAATATTAGTCCCATGTATCTCTGCATTCATGACATGTCAGATCAAGGAAACTCTGAATTTTTACGACATTGTAGAAAGATGATAGGAGGTAGGCCGTTCAGAGTTTTCCAATTGGAAAGTATCAGAATCAAAAAATAGAAAGCTACACGCAAATAACTTATTTTGGAGGTTCCGACATGTGATGAATGCAGCATCTGTGTTAAGGTACGTTTTCATTTGCGGAGGCTTTCCAGACCGACAAGCAAAGGGTAGAGCAGGAATCGTATAGGTCAGTGGGTTAGCCTGGGCATGTTCTGTACAAAAAACGTTTTTGAATGTTTCCTTTAAGTGTACTTTTTGGagattactaatgttactgtcccgttacaaaaaaacaaaattgaattgaaatactgtagaattccattcattcctatggaggactgctcctactggggagtgccaatacGGCCAACTTGTgccttcaaagcctctcaatggccaataaaTAACATCAGCAATCCAGAGTTTATATACATCGTTGTTACCCACTTCTCTCTACGTATGGGAcactagccacaatagtggaatttgtgtTTCATCTGCAAAATCTAAGTCCCTCATTGAAAGTGATGCAAACGGATACAAATAGTGGATTCATGCCATATTTGGACTAGATAATactaaacaaggttggaatgttattACATATTTGTTGACACGATGGGttcacaatccataggtaaggctgtacagtgcatATAAGTATGCCCCaatgcaattatgcagtctaataCATCCACAATGGGATTTCAACAGTTTGTTTCTCTGTTGTCAAACTAATTAATTGTTGTATTTAATTTAAAATTAGgcaacaacattccaacctttaGCATTATCTAGTCCAAACATGTCATGATTCCACTATTGGTAACCATTGCATCCTTTTCAGCGAGGGACTTTAATTTTGAAAGCAAACTGCAAATTCCACACATTATAGCCCTGCACGGGCATTAATTTTAAGTCCGAGCCCTAGTCATGCCGTTCAGGCCCTAGCCTACCCCAGGCCCGATTTACTTCTGCCAAATGTAAGGGCCGAGCTTGGGCTCCATTAgttgctgctctctgtctgtcactcactcCCTGCACGcgtttacatttttacatttgagtaatttatcagaccatcttatccagagcgagttcatacattttcatactggtcccctgtgggaatcaaagccacaaccctggcattgcaagtgccatgctctaccaagggaGCCACACAGGACTAGCAAAACCATTGCCTCATAGCGGCTCTGATCAATTTAGTGATACCCGAGCCCTGCCTGTACCCTAGTTATCGATGAAAAAACAGGCCCTACGTGGCCGTAACCCGATGTACAGTGTAATGTTGGGGCCGTGAGGCTCGGTTCAGGTAGCAGAGCTCTAAATcaaatcatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgcc

Function

symbol description
spats1 Orthologous to human SPATS1 (spermatogenesis associated serine rich 1).

NR:

description
spermatogenesis-associated serine-rich protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612081.2 True 3229 mRNA 0.43 6 24797849 24805466

Neighbor

gene id symbol gene type direction distance location
LOC110529661 LOC106571453 coding upstream 165599 24626040 ~ 24632250 (+)
lbr LOC106571452 coding upstream 173983 24611307 ~ 24623866 (+)
LOC110529212 enah coding upstream 187286 24503815 ~ 24610563 (+)
slc5a6a LOC106571448 coding upstream 362984 24402544 ~ 24434865 (+)
rpl7l1 rpl7l1 coding upstream 396708 24398713 ~ 24401141 (+)
LOC110529664 LOC106571456 coding downstream 136620 24942086 ~ 24979444 (+)
tnfrsf21 LOC106571462 coding downstream 335311 25140777 ~ 25184652 (+)
adgrf8 LOC106571458 coding downstream 391340 25196806 ~ 25234163 (+)
LOC110529668 LOC106571459 coding downstream 448713 25254179 ~ 25273650 (+)
trnas-gcu-5 NA coding downstream 500765 25305888 ~ 25306312 (+)
G688603 NA non-coding upstream 66738 24730906 ~ 24731111 (+)
G688597 NA non-coding upstream 70625 24727006 ~ 24727224 (+)
G688587 NA non-coding upstream 76917 24715113 ~ 24720932 (+)
G688558 NA non-coding upstream 99991 24697587 ~ 24697858 (+)
G688556 NA non-coding upstream 102151 24695458 ~ 24695698 (+)
G688747 NA non-coding downstream 123122 24928588 ~ 24929234 (+)
G688749 NA non-coding downstream 127392 24932858 ~ 24937890 (+)
G688750 NA non-coding downstream 133725 24939191 ~ 24939632 (+)
G688766 NA non-coding downstream 161950 24967416 ~ 24967620 (+)
LOC110529210 ift172 other upstream 806850 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1273814 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 1825013 22946501 ~ 22972836 (+)
G685551 NA other upstream 2315710 22480323 ~ 22482139 (+)
G685469 NA other upstream 2349776 22446771 ~ 22448073 (+)
G688613 NA other downstream 177263 24982729 ~ 24984826 (+)
G688823 NA other downstream 253487 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 873186 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 1327725 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 1575662 26381097 ~ 26393547 (+)

Expression


Co-expression Network