LOC110529665 (LOC106571552)


Basic Information

Item Value
gene id LOC110529665
gene name LOC106571552
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24992535 ~ 25010299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612083.2
ACCTAAGCATGGCTCTTACGGGGAATGAGACCTCAGCTCGCCCCGATTATGTCCCCCATTATCTCCTGGAGGGTGATCCATTTGCCTCCAAGCTGTCCAAGGAGGCCGACATCGTGGCTGCCTTCTACATCTGCATCATAGGGATCCTGTCTGCCACAGGAAATGGCTATGTTATATACATGACCGTCAAACGCAAGACAAAGCTAAGGCCACCTGAGCTCATGACAGTTAACTTAGCCATCTTTGACTTTGGCATATCAGTCACAGGGAAACCGTTCTTTGTGGCGTCCAGTTTCTCCCACCGCTGGCTGTTTGGTTGGGAGGGCTGTCGTTTCTATGGTTGGGCTGGCTTCTTCTTCGGTGTTGGCAGCCTCATCACCATGACCGTAGTTAGCCTAGACCGATACCTCAAGATCTGTCATCTCAGATACGGTACTTGGCTGATGAGGCACCATGCCTTCCTGTGTCTGGTGTTTGTCTGGCTCTACGCAGGCTTCTGGGCCACCATGCCCCTGGTGGGCTGGGGCAGCTACGCACCAGAGCCATTTGGCACCTCCTGTACCCTGGACTGGTGGCTGGCCCAGACCTCCGTGGCGGGCCAGAGCTTCGTCATGGCCATCCTCTTCTTCTGCCTTATCTTCCCCACCGGCATCATCGTCTTCTCCTATGTTATGATAATCTTCAAGGTCAACTCCTCAGCTAAAGAGATCTCCCACTTTGACACCAGGAACAAGAACAGCCATAGCCTGGAGATGAAACTgaccaagGTGGCGATGTTGATCTGTGCTGGTTTCTTGATAGCGTGGATCCCGTATGCAGTGGTCTCAGTGGTGTCTGCGTTTGGCGAGCCCGACTCAGtgcctatctctgtctctgtgatcCCCACTCTGCTGGCTAAGTCCTCTGCCATGTACAACCCCATCATCTACCAAGTTATTAACCTGAAACGCTCCTGTGCAAAATCCTCCTGTTTCCAAGTCCTGAAGAAGTGTagacattttaaaaagtcaagGATTTACACCATTTCTGGCTCACTTAAAGACAGACCATCCGTAAAAGAGTCTCACAGTGAAATGTGAGAAAAGGACAGTGACTCTCTTCTGTGAAATGACTCTTAGTTTTTCCCCCTCACCAGTCCAATCACAACCCTGCTATCAACTGCTAAGACATGGACCACCGCTCACCACCCAGACCTACGCATCCCAGCCTTGCGGTATCTATGTTCCTGCTCCAAACAGCTCTCTGTACCCTCCTACTTCATGTCCCTCTCTGTGTTTACAGCTCAAGGCTGGcgccaaaatgtttttttttacactttgtACAGATTATTTTGTATTGTGTACTCGTGCACCTGTGACTTGCATAGTTTGAAGACATTTAAACCTTTATGTGCACCTGTAAGATCTAAAGCGCTGTTCAGAAAGAGGTATGATATACTCTAAAGAGAGCTGGAGGGACTGTGGTGTTGGCGTTTAGCGTTGTCCCCGGCTTCAGGCAGGTCTGACTGTAGCAGCACTTTTCATCAACGATCAAAGTCATCATAGGATTCTTACTGTCCCTCTATGCATGTTCACAGATGCCGTTGACGTCACGAAACGAAATACCATTTTAGATCATACACAAACTGCACGGTCCACTGCTCCGTAGCAGCCAGTGGATGAAGTGGTTGGACCAAATAATGAAGGAAAACATCACAGCAAAGTCTGTTAAAGGAGTGGCTATGTCTTACAGCACTGTGTTCCTGTCACTGTTAACCATTCTGTATGCACTGATGTCAGTCTTAGTTGAGATCAATGATGGTAGTAAAGGTTTAACCCATTCAAAGTGAAGTATATTCACACACAAGTAGTCAGAAATCCTTCACTAACAACAGTTACCAAAAATGTACACACAGCACCTTAGCTGGAGTCCTTCATGGGGAAATTGCCACGTCCGTTTGCGATATTaaaacaacaaagaagttactgcaaaccATAAACACTGTTTCTTTATTCTCTCAGACGTCATTGCGAATGCAATAGAACAGCAAAACATGTACTGCAATTGTTTTTACCACGTTGGCCGACGCTCCTAACTCCCActttgtcaacaaaacaaaaacaaatataccTAAGAGACGCAATGAACAGGATCAGTTGGATAGCAACCCAAggaaatgacgttgaaccaacatggaatagacattgaattgacgtctgtgacCAGTAGGAAAACAAGCAGTCTAGCATGTTGGAACTATTTCACATTGTCTAATGCAGACGAACCAAGTCCACTTGATCAATAGTTATTGCTCTAGTATCCTATGGTGCCACTGGTGCCAATGACATCTATAGTCCCTCCAACTGGCCTGGTGCAGCCATTTAAAGTTGCAGTGACTTTATATAGAGCCCCACACTGGAGGtgccataatacccataaaacctacagGGAAATGGTTTCAATCGTTTTCCCACCATtcactacacaaaacacagcccttatttgaagtgtttctaaaaccCCCTATTGGAAATGGTGGAAAAAtgtttggaaccatttccctgtttgaccgctaggttttatgcgTATTATGACTTATACGGTGGTACTCCATTCACAAAGCTTCTAAGAACACatacataatgtttacatataaAATTGTATGGCCCCATGTTCATCGGTTCAGTTCCTATAGCCTCTAGTGGTGTAGCGTGGCTGACTTTGAATGCAGAAAGTAATCATTCTCAAATTCATTACAGGTTAATTCATTGAGTGCATATACCAAATCTGGAGTCAATCTGATTCATGAGAATAAGATTTGTAAAATATTTGAAGCATTAGCATCTGTACGAACATGTACTGTGCGTACATATCGGAATGCAGCAACATTTCAAAACCATTAACATTAACGACTGATGTAATGAGTCTAAATACAAAATCTGGAGTAATTGTGAGATATAGTTCACAAGGAGAAACCATTGCAGATCATTTTGAGCATTAGTGTTACATACGCAAATCATTTGTTAATAGTTTCCTTGTTTTTGGAGATAGCAATTCCAAATTCTGTCAAGGTATATCTTAGGGGCGATGACACATTTCAAGTTTATAGACCACTGTGGAGTGGATTTACAATGGTTTAAATGGACACATGAAATCAGATTTTTGTACATTCCACATTTTCTGTCATTTGGTCCTATGGTTCATCAGCAgaagattaaaaaatatattttttagcaTATTACCAAATGTGCTAACctgcatctactggtatagtgtggccATCTTTGAAAGAGTTCAAATACCAACTTTTGGAGTAAATCTGACTTTTAGTCCATGAGAAGAAGATTTTTTATGATTATTTTAAGCATTAGCTTTACGTAGTCAAAAAAGTGAATTGTTCATAGTTTTGTTATTGTTTAAGATATCAATGCCAAATTTAACATGGTTCATCATGGTAATGTCTTTGATGAGTATAAAAGTTTCAAGTGGCCATTGTGAAGGGGATTTACAATGGTTTAAATGGACATTTAAAATCTGATTTCCTGATTATCAATAACTCAGCCATCTCTTAACCAATCCCGTAGCCTTCCTCAAACTACGTTAAGCGATGTACCATGGGCCTACATACCGAAGTTGGTGTTATTTGGTTCATGAGAATACGTTTTCAAAGGTTTTCCAAAATGTCTAAGATGGAGGCAAATTTGTTCAGCATGAGAAAAGACACCTCATTCCAAGGTTTCTCTTGATCAAACAAGGTGGAGGAAATTAGGGTTTAAGTGGGACTGCTTATAACAGCGCCATCTATAGGCCATCAGAACCATTCTTTTTGACCAAGTTACTCAAGGCATTTAGTTTCTGTGCACCAAATTAGAATGAAAATGACCAATCCATGTTTGAGTTATTTGGccatctaaaaaatatatatatatatatatatatatatatatatatctaagaATAACGATAGCTTTCACAGCTTTGCTGGGAGCTCCTAATAACAGCGGCCTTGGGCGGACAGTGGCGCTGTTTCCCCTACTGTGTCTTTAACTCACATCTTTAACTCACATTGAGACAGGCTACAAGGCAACTTCTGAGAGTGTTCTCTTAATCTACTCAAGAGCTGGAACTCTGATTAAAGTGTTTACATGTTCTAATAAATCGAAAGATTGCTCAGAAGTCTGAGTGTTTTAATCAGTTTATGCTTACTTAATAATGTTTATTAAAAGTATTTTACATGATACTGTGTGCGGGTGTGTATGGGGTCCAGGCATATGCAAGAAAACCATTTTTTGAAAAACATCTAAATATTCAGTGGAAATAATTATCTTATTGGTTATTATAAAATGTCATACTGtcaatttttgtattttgaactGTTCATCTCCACTCTAACTGAGATGGTCAGTAAAAACACAAGTATGGCTGTGTTGGGATGTCCTGTCAAGGCCTGAAACATCCACAGACAGTGGGTGATAGCGGTTGATGTGTTGAGAGGACCAGGTCTCACTGACCTCTTCAGAACAATGGAAAGGCAGAAGGATCAACACACCTGCACTCAGCCCAAGGGCCTAACATTGGCAAGAGGCATCAACAATATTTATTTGACAGTATTTATTCAAACGCAATATCTCCTCTCTTAGTGTCTTAGTAGagttgtgtttttgttgtttgtATTCTTTTCAGTTTGTATTCTTTCAGTGTTTTGCTGATAATCggattttatttgtttattattttattatgttacattttgaatgatagtattaggaaagttgagtgATGTCACGTTCTATAATGTTAAGTAATTTTCTTAAATGTTTGAGATGttaatctgtaaaaaaaaatacatgtcaacCAAGAGGTTCGTATTGATGTCAGAGGTCATAcgtgtatttgcatatttctcaTAGAGTGAACTGTAATGCTTACCTGTTATCACATCTTGTTAACGCACAAAAATGATGAATGAGGAAGGAGATAGCTAACATGTCGTTATTTGATCTCAGGAATAGGTCAATTTCTTTCCTTAGTGGACTTTCTGTCCGTCTCCACTTCACAGTATTAGTCTCGTCACTTTATATGCCTCTGTTTTAATGAGGATGCCCTACTGTACTTCAACAGGGTTTGATTGTGTCTCAGGAAAGAAGGATCTAATTCATTGTATTTTCCAAACaaaatatttgaaattatttGAATGTTTTATCATGAAGAACATGGTCTGAAGCAGCAAGGATAGTGGTCCAGGAGGAATATGTAACATTGCTTATTGTCATGCACTTTGTGTTTCCTATGAGCATGTGTAATATAACTACTTTCATACTACCTGTAGTTTTCCTTCAAGTTCCATATGTCACACCTTATACTTCATTCCACATTCTTTATGAGGAATGACTTTTTGTTCCTTTATTTTGTAAAGAAAAGTACAGCATTCGATAGCATATCTGTTGTGTTGAAAAAAGATACGTGCAAATAAAGGTGCATTTATGCACATA
>TU784590
ATATCGGAATGCAGCAACATTTCAAAACCATTAACATTAACGACTGATGTAATGAGTCTAAATACAAAATCTGGAGTAATTGTGAGATATAGTTCACAAGGAGAAACCATTGCAGATCATTTTGAGCATTAGTGTTACATACGCAAATCATTTGTTAATAGTTTCCTTGTTTTTGGAGATAGCAATTCCAAATTCTGTCAAGGTATATCTTAGGGGCGATGACACATTTCAAGTTTATAGACCACTGTGGAGTGGATTTACAATGGTTTAAATGGACACATGAAATCAGATTTTTGTACATTCCACATTTTCTGTCATTTGGTCCTATGGTTCATCAGCAgaagattaaaaaatatattttttagcaTATTACCAAATGTGCTAACctgcatctactggtatagtgtggccATCTTTGAAAGAGTTCAAATACCAACTTTTGGAGTAAATCTGACTTTTAGTCCATGAGAAGAAGATTTTTTATGATTATTTTAAGCATTAGCTTTACGTAGTCAAAAAAGTGAATTGTTCATAGTTTTGTTATTGTTTAAGATATCAATGCCAAATTTAACATGGTTCATCATGGTAATGTCTTTGATGAGTATAAAAGTTTCAAGTGGCCATTGTGAAGGGGATTTACAATGGTTTAAATGGACATTTAAAATCTGATTTCCTGATTATCAATAACTCAGCCATCTCTTAACCAATCCCGTAGCCTTCCTCAAACTACGTTAAGCGATGTACCATGGGCCTACATACCGAAGTTGGTGTTATTTGGTTCATGAGAATACGTTTTCAAAGGTTTTCCAAAATGTCTAAGATGGAGGCAAATTTGTTCAGCATGAGAAAAGACACCTCATTCCAAGGTTTCTCTTGATCAAACAAGGTGGAGGAAATTAGGGTTTAAGTGGGACTGCTTATAACAGCGCCATCTATAGGCCATCAGAACCATTCTTTTTGACCAAGTTACTCAAGGCATTTAGTTTCTGTGCACCAAATTAGAATGAAAATGACCAATCCATGTTTGAGTTATTTGGccatctaaaaaatatatatatatatatatatatatatatatatatctaagaATAACGATAGCTTTCACAGCTTTGCTGGGAGCTCCTAATAACAGCGGCCTTGGGCGGACAGTGGCGCTGTTTCCCCTACTGTGTCTTTAACTCACATCTTTAACTCACATTGAGACAGGCTACAAGGCAACTTCTGAGAGTGTTCTCTTAATCTACTCAAGAGCTGGAA
>TU784591
CCATTTGGCACCTCCTGTACCCTGGACTGGTGGCTGGCCCAGACCTCCGTGGCGGGCCAGAGCTTCGTCATGGCCATCCTCTTCTTCTGCCTTATCTTCCCCACCGGCATCATCGTCTTCTCCTATGTTATGATAATCTTCAAGGTCAACTCCTCAGCTAAAGAGATCTCCCACTTTGACACCAGGAACAAGAACAGCCATAGCCTGGAGATGAAACTgaccaagGTGGCGATGTTGATCTGTGCTGGTTTCTTGATAGCGTGGATCCCGTATGCAGTGGTCTCAGTGGTGTCTGCGTTTGGCGAGCCCGACTCAGtgcctatctctgtctctgtgatcCCCACTCTGCTGGCTAAGTCCTCTGCCATGTACAACCCCATCATCTACCAAGTTATTAACCTGAAACGCTCCTGTGCAAAATCCTCCTGTTTCCAAGTCCTGAAGAAGTGTagacattttaaaaagtcaagTCCAATCACAACCCTGCTATCAACTGCTAAGACATGGACCACCGCTCACCACCCAGACCTACGCATCCCAGCCTTGCGGTATCTATGTTCCTGCTCCAAACAGCTC

Function

NR:

description
LOW QUALITY PROTEIN: opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612083.2 False 5471 mRNA 0.40 6 24992535 25010299
TU784590 False 1257 lncRNA 0.35 1 24993901 24995157
TU784591 True 576 TUCP 0.51 3 24996765 24997835

Neighbor

gene id symbol gene type direction distance location
LOC110529662 LOC106571455 coding downstream 197119 24739057 ~ 24795416 (-)
srp09 srp09 coding downstream 543200 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 545595 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 553888 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 580701 24404911 ~ 24411834 (-)
cd2ap LOC106571457 coding upstream 50388 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 266157 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 279910 25290209 ~ 25294380 (-)
LOC110529673 LOC106571464 coding upstream 286101 25296400 ~ 25304057 (-)
LOC118965601 NA coding upstream 294120 25304419 ~ 25305913 (-)
G689083 NA non-coding downstream 5178 24987118 ~ 24987357 (-)
G689082 NA non-coding downstream 12983 24977011 ~ 24979552 (-)
G689073 NA non-coding downstream 32507 24959820 ~ 24960028 (-)
G689070 NA non-coding downstream 35717 24956562 ~ 24956818 (-)
G689069 NA non-coding downstream 36817 24955498 ~ 24955718 (-)
G689096 NA non-coding upstream 6033 25016332 ~ 25016631 (-)
G689080 NA non-coding upstream 46486 25056785 ~ 25057382 (-)
G689079 NA non-coding upstream 47289 25057588 ~ 25058686 (-)
G689593 LOC106571458 non-coding upstream 206716 25217015 ~ 25221300 (-)
G689606 NA non-coding upstream 222840 25233139 ~ 25236243 (-)
G688922 NA other downstream 255495 24736046 ~ 24737040 (-)
G688537 NA other downstream 311109 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 361486 24629554 ~ 24631049 (-)
G688366 NA other downstream 566982 24425063 ~ 24425553 (-)
G689656 tlr5m other upstream 365823 25376122 ~ 25407347 (-)
G689685 NA other upstream 400524 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 507267 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 653866 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 791665 25801320 ~ 25805570 (-)
G689089 NA non-coding upstream 8150 25003307 ~ 25003535 (-)
G689092 NA non-coding upstream 13371 25008528 ~ 25008737 (-)
LOC110529665 LOC106571552 other upstream 1608 24992535 ~ 25010299 (-)

Expression


Co-expression Network