cd2ap (LOC106571457)


Basic Information

Item Value
gene id cd2ap
gene name LOC106571457
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25060687 ~ 25134641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612084.2
GGCCACCGTTGACGCTCAACACTGATTCAAGAGATGGACTTCTTTGATCCCCAAACCATTACACTGTTCATGCTCTCGGCTAATGAACGAATGGCAGTCCAACTTCCTCTCGCGGGACTCTCCTTTCTAAATATCGCGGAGTTTCCTTctgttttgtatgtgtgtggcaGGCGTAGTTTCGGGCAAGTCTAAGAAAGGTGGAGACTTTCGGGATAACTTCCTGTACAGTAATCTTGATATCGTTAGCTACAAAGATAGGTTTGGTTGGCTATTCAAGCAAAGACGAATGGCTTAAGTAACGGTGTGCTAAACTTGATTATCGGTATTGAATTAAATACACATACAGTAGCTAGCGTTCAAGCTGCTATATAACTCAAGCAACCGGATAGCAGATTCCAAACATCTCATATAGCGAGACGGTCCTGGCCACATTGAAGGACAGTATGGtagAGGTTGTGGTGGAGTATGAGTACGAAGCCCTCCATGAAGATGAGCTGACCCTTAGGCTGGGAGAAGTGATCAGGAACGTCCGCAGGAtcgaggaggagggatggatggagggagacctCAACGGGAAGAGAGGACTCTTCCCTGACAACTTCGTCAAGGAGATGAAGAAGGAGCCCAAGGAGGTGAATGTGACAAAAGAGGAGGCCAAGGAGGAGGCGCAGCCCCAGCGGAGAGAGAAGAGTGCAGGGAATGTGGCCAACCTGGTCCAGCGGATGAGCACCTACGGCATCCCAGCTGGGGGCTTCCAGCCACACTCACAGCCCCGCGGTCTCAAGAAGAAACCTAAGAAGCGGCAGTGCAGGGCTCTGTTTGAATACGTGCCCCAGAACGAGGATGAGCTGGAGCTGAAGATAGGGGATATCATCGACATCAATGAGGAGGTGGAGGAAGGCTGGTGGAGTGGAACCATGAATGGCAAATCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGATGGAGACGAACGCAGACGGACAGACAAATGACTTAACAGATGAAGCCGACGCCAGTGGTAAAGAAGCTctgctccccccctcccccacccacccctctccaGGCAATGGAGTGATCACCCAGCCCAAGAAGATCCGGGGGGTGGGCTTTGGGGACATCTTCAGGGAAGGTTCGGTCAAGCTAAAGGCCCGCCTGcccagcacagagggagaggagaagaaagacaaACCAATCCCATTATTACCATCTGCCGCAAAGCCCGCCCATTCCAACGTGACAGACTCACAGAAAGCAGAGGGGGACAGCAAAGCAAAAGTAAAAGAATACTGCAAGGCCACATTTGCATTTGAAGCCACAAACCAAGATGAGCTGACACTGAAAGAGGGTGACGTCATACAGATTTTGAGTAAGGACACAGGGGAGCCGGGGTGGTGGAGAGGGGAGATcggaggtaaagagggagtttttCCTGACAACTTTGTGACTGTGATGTCAGACGCAGACAAAGAgCCGGCTCCCACATCAAGAGGATCAGTCAAACTGTCTCCCAAGCAGGAAGCAGAAGAGAGACCCAAGAAGCCACCCCCACCATCAAAAAGCATAGCTCGCAAACCCGAGGTCCCGTTGGCTGACAAGAAGCCCCTGCATCCGCATCCTGAGGACCGAGgTGACAAGACAGATCAAAAACTGTCAAAGCCTACTGCCCCTCTGGTCCCACCCAAGAAACCTGTCCCCCCGCCAGGCAAGAGTAAACCAGGCGTCCTCCCCCCAAAACGTCCAGACAAGCCTCTCGCACCCTCCCTAGGGGCCAAGCACAATGGAGAGGTGCCTTCCACACTTCCAAAGTCTGATTTTGAGCCAACGTTACCCAGCAAACCAAAAACACTGTTGGGTGACTGGGGGGACAAAGCCCTTGACATGGACCTGATGAGCTTTGATGATCTGTCATCTACCTCTGAGAAGCTGTCTCACCCCACCGCTAACAGACCAAAGATGGCTGGAAAGAGGCTTCCCGCTCAGTTTGGAGGAGGCCACTCTCCAAACAAGGACATCAGCGTGGAGAAAACCTTCATGTTTGACGAAGAGGACCGCCCCAAGCCAAAGTTGATAGACGCAAGAAAGCCATCCATGCCCAGCTCACACTCCCAGTCTCCCGTCCTCAAGCCCAGCCCATCCCCGTCAGAGGGGCTCAAGGCCAGTGCGGCTTCAGCCCCTGGCCGCAGAAGTCCCAGCCCAGGCCCCTGCGCGGAGACCAAGCCCAAGGCAGAGCCAGAGGAGCGGAAGTCTGAGCTGCAGGACCTCCGAGGCCAAATGAAAGAACTGCTGCTGTCTGTGGAGCTCCTCAAGACCCAGCAAATgagagagatggcagAGCTGAGAAGCGAGCTGGACGAGGAGAGGTTGAAACGAGTGGCCCTGCAGaTGGAGATAGAGAAATTAAAGAAGATGGTTCATTCGACGTGAAGTCTGACCCAATCAGCCTGGAACATCAGTCACCTATCGGTCTGTCTCTAAGTAGAAACAGGAAGGGGACGATGGCATTCCTATAATACTTTTAGTTATCATCAACCTATTCCACATTTGTAAGATTTACATTTTTGCACATATTAAGGTTTTCTAGTTCTAGAAAGGTGATAAATACAGATGTATATGTTTTTTGTTacttagttttttttttgtttctttttgtttTGCCAACACAAACGATCGAGGCCTTACTAACTACTGTGCTGGACTGGCAGTCTCTGCATTCTCTATGGGAATGTGTGAGGGTTGCTCAATACTACTGATTCTGTACAAAGTGTTAGGGGAttcctttttgttttattttttttatgactTGCAGGTAGTTGATTTTAAAGATGATTCTGATTTTCAGTTCAAGTATCCATATTAGCCTcctttagatcataatgaattatATTGTGATATGTTGCTATAGCAACAGTGTTGTACTCCATTGCTATGGCATAAGGGATCATTTTctttggttttttttttttttcttctaacaTTCCTATCCAGGGTAACACTGTTGTGCCTGTTAAACACATATTAAAGTGTTAATATTGGGAGATTACATTTATCAAACTGTTTAGACTTGCTGATGATATATATTTGTAAGTTCTGACAATGTGCTTAGACATATAGAGGGTCCTTTTTTCTTTTTCATGTTGCTCTTCTTGTAAAGGTCACATGGAACGGTTC
>XM_021612085.2
GGCCACCGTTGACGCTCAACACTGATTCAAGAGATGGACTTCTTTGATCCCCAAACCATTACACTGTTCATGCTCTCGGCTAATGAACGAATGGCAGTCCAACTTCCTCTCGCGGGACTCTCCTTTCTAAATATCGCGGAGTTTCCTTctgttttgtatgtgtgtggcaGGCGTAGTTTCGGGCAAGTCTAAGAAAGGTGGAGACTTTCGGGATAACTTCCTGTACAGTAATCTTGATATCGTTAGCTACAAAGATAGGTTTGGTTGGCTATTCAAGCAAAGACGAATGGCTTAAGTAACGGTGTGCTAAACTTGATTATCGGTATTGAATTAAATACACATACAGTAGCTAGCGTTCAAGCTGCTATATAACTCAAGCAACCGGATAGCAGATTCCAAACATCTCATATAGCGAGACGGTCCTGGCCACATTGAAGGACAGTATGGAGGTTGTGGTGGAGTATGAGTACGAAGCCCTCCATGAAGATGAGCTGACCCTTAGGCTGGGAGAAGTGATCAGGAACGTCCGCAGGAtcgaggaggagggatggatggagggagacctCAACGGGAAGAGAGGACTCTTCCCTGACAACTTCGTCAAGGAGATGAAGAAGGAGCCCAAGGAGGTGAATGTGACAAAAGAGGAGGCCAAGGAGGAGGCGCAGCCCCAGCGGAGAGAGAAGAGTGCAGGGAATGTGGCCAACCTGGTCCAGCGGATGAGCACCTACGGCATCCCAGCTGGGGGCTTCCAGCCACACTCACAGCCCCGCGGTCTCAAGAAGAAACCTAAGAAGCGGCAGTGCAGGGCTCTGTTTGAATACGTGCCCCAGAACGAGGATGAGCTGGAGCTGAAGATAGGGGATATCATCGACATCAATGAGGAGGTGGAGGAAGGCTGGTGGAGTGGAACCATGAATGGCAAATCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGATGGAGACGAACGCAGACGGACAGACAAATGACTTAACAGATGAAGCCGACGCCAGTGGTAAAGAAGCTctgctccccccctcccccacccacccctctccaGGCAATGGAGTGATCACCCAGCCCAAGAAGATCCGGGGGGTGGGCTTTGGGGACATCTTCAGGGAAGGTTCGGTCAAGCTAAAGGCCCGCCTGcccagcacagagggagaggagaagaaagacaaACCAATCCCATTATTACCATCTGCCGCAAAGCCCGCCCATTCCAACGTGACAGACTCACAGAAAGCAGAGGGGGACAGCAAAGCAAAAGTAAAAGAATACTGCAAGGCCACATTTGCATTTGAAGCCACAAACCAAGATGAGCTGACACTGAAAGAGGGTGACGTCATACAGATTTTGAGTAAGGACACAGGGGAGCCGGGGTGGTGGAGAGGGGAGATcggaggtaaagagggagtttttCCTGACAACTTTGTGACTGTGATGTCAGACGCAGACAAAGAgCCGGCTCCCACATCAAGAGGATCAGTCAAACTGTCTCCCAAGCAGGAAGCAGAAGAGAGACCCAAGAAGCCACCCCCACCATCAAAAAGCATAGCTCGCAAACCCGAGGTCCCGTTGGCTGACAAGAAGCCCCTGCATCCGCATCCTGAGGACCGAGgTGACAAGACAGATCAAAAACTGTCAAAGCCTACTGCCCCTCTGGTCCCACCCAAGAAACCTGTCCCCCCGCCAGGCAAGAGTAAACCAGGCGTCCTCCCCCCAAAACGTCCAGACAAGCCTCTCGCACCCTCCCTAGGGGCCAAGCACAATGGAGAGGTGCCTTCCACACTTCCAAAGTCTGATTTTGAGCCAACGTTACCCAGCAAACCAAAAACACTGTTGGGTGACTGGGGGGACAAAGCCCTTGACATGGACCTGATGAGCTTTGATGATCTGTCATCTACCTCTGAGAAGCTGTCTCACCCCACCGCTAACAGACCAAAGATGGCTGGAAAGAGGCTTCCCGCTCAGTTTGGAGGAGGCCACTCTCCAAACAAGGACATCAGCGTGGAGAAAACCTTCATGTTTGACGAAGAGGACCGCCCCAAGCCAAAGTTGATAGACGCAAGAAAGCCATCCATGCCCAGCTCACACTCCCAGTCTCCCGTCCTCAAGCCCAGCCCATCCCCGTCAGAGGGGCTCAAGGCCAGTGCGGCTTCAGCCCCTGGCCGCAGAAGTCCCAGCCCAGGCCCCTGCGCGGAGACCAAGCCCAAGGCAGAGCCAGAGGAGCGGAAGTCTGAGCTGCAGGACCTCCGAGGCCAAATGAAAGAACTGCTGCTGTCTGTGGAGCTCCTCAAGACCCAGCAAATgagagagatggcagAGCTGAGAAGCGAGCTGGACGAGGAGAGGTTGAAACGAGTGGCCCTGCAGaTGGAGATAGAGAAATTAAAGAAGATGGTTCATTCGACGTGAAGTCTGACCCAATCAGCCTGGAACATCAGTCACCTATCGGTCTGTCTCTAAGTAGAAACAGGAAGGGGACGATGGCATTCCTATAATACTTTTAGTTATCATCAACCTATTCCACATTTGTAAGATTTACATTTTTGCACATATTAAGGTTTTCTAGTTCTAGAAAGGTGATAAATACAGATGTATATGTTTTTTGTTacttagttttttttttgtttctttttgtttTGCCAACACAAACGATCGAGGCCTTACTAACTACTGTGCTGGACTGGCAGTCTCTGCATTCTCTATGGGAATGTGTGAGGGTTGCTCAATACTACTGATTCTGTACAAAGTGTTAGGGGAttcctttttgttttattttttttatgactTGCAGGTAGTTGATTTTAAAGATGATTCTGATTTTCAGTTCAAGTATCCATATTAGCCTcctttagatcataatgaattatATTGTGATATGTTGCTATAGCAACAGTGTTGTACTCCATTGCTATGGCATAAGGGATCATTTTctttggttttttttttttttcttctaacaTTCCTATCCAGGGTAACACTGTTGTGCCTGTTAAACACATATTAAAGTGTTAATATTGGGAGATTACATTTATCAAACTGTTTAGACTTGCTGATGATATATATTTGTAAGTTCTGACAATGTGCTTAGACATATAGAGGGTCCTTTTTTCTTTTTCATGTTGCTCTTCTTGTAAAGGTCACATGGAACGGTTC
>XM_036985112.1
TGGCCACCGTTGACGCTCAACACTGATTCAAGAGATGGACTTCTTTGATCCCCAAACCATTACACTGTTCATGCTCTCGGCTAATGAACGAATGGCAGTCCAACTTCCTCTCGCGGGACTCTCCTTTCTAAATATCGCGGAGTTTCCTTctgttttgtatgtgtgtggcaGGCGTAGTTTCGGGCAAGTCTAAGAAAGGTGGAGACTTTCGGGATAACTTCCTGTACAGTAATCTTGATATCGTTAGCTACAAAGATAGGTTTGGTTGGCTATTCAAGCAAAGACGAATGGCTTAAGTAACGGTGTGCTAAACTTGATTATCGGTATTGAATTAAATACACATACAGTAGCTAGCGTTCAAGCTGCTATATAACTCAAGCAACCGGATAGCAGATTCCAAACATCTCATATAGCGAGACGGTCCTGGCCACATTGAAGGACAGTATGGtagAGGTTGTGGTGGAGTATGAGTACGAAGCCCTCCATGAAGATGAGCTGACCCTTAGGCTGGGAGAAGTGATCAGGAACGTCCGCAGGAtcgaggaggagggatggatggagggagacctCAACGGGAAGAGAGGACTCTTCCCTGACAACTTCGTCAAGGAGATGAAGAAGGAGCCCAAGGAGGTGAATGTGACAAAAGAGGAGGCCAAGGAGGAGGCGCAGCCCCAGCGGAGAGAGAAGAGTGCAGGGAATGTGGCCAACCTGGTCCAGCGGATGAGCACCTACGGCATCCCAGCTGGGGGCTTCCAGCCACACTCACAGCCCCGCGGTCTCAAGAAGAAACCTAAGAAGCGGCAGTGCAGGGCTCTGTTTGAATACGTGCCCCAGAACGAGGATGAGCTGGAGCTGAAGATAGGGGATATCATCGACATCAATGAGGAGGTGGAGGAAGGCTGGTGGAGTGGAACCATGAATGGCAAATCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGATGGAGACGAACGCAGACGGACAGACAAATGACTTAACAGATGAAGCCGACGCCAGTGGTAAAGAAGCTctgctccccccctcccccacccacccctctccaGGCAATGGAGTGATCACCCAGCCCAAGAAGATCCGGGGGGTGGGCTTTGGGGACATCTTCAGGGAAGGTTCGGTCAAGCTAAAGGCCCGCCTGcccagcacagagggagaggagaagaaagacaaACCAATCCCATTATTACCATCTGCCGCAAAGCCCGCCCATTCCAACGTGACAGACTCACAGAAAGCAGAGGGGGACAGCAAAGCAAAAGTAAAAGAATACTGCAAGGCCACATTTGCATTTGAAGCCACAAACCAAGATGAGCTGACACTGAAAGAGGGTGACGTCATACAGATTTTGAGTAAGGACACAGGGGAGCCGGGGTGGTGGAGAGGGGAGATcggaggtaaagagggagtttttCCTGACAACTTTGTGACTGTGATGTCAGACGCAGACAAAGAgCCGGCTCCCACATCAAGAGGATCAGTCAAACTGTCTCCCAAGCAGGAAGCAGAAGAGAGACCCAAGAAGCCACCCCCACCATCAAAAAGCATAGgTGACAAGACAGATCAAAAACTGTCAAAGCCTACTGCCCCTCTGGTCCCACCCAAGAAACCTGTCCCCCCGCCAGGCAAGAGTAAACCAGGCGTCCTCCCCCCAAAACGTCCAGACAAGCCTCTCGCACCCTCCCTAGGGGCCAAGCACAATGGAGAGGTGCCTTCCACACTTCCAAAGTCTGATTTTGAGCCAACGTTACCCAGCAAACCAAAAACACTGTTGGGTGACTGGGGGGACAAAGCCCTTGACATGGACCTGATGAGCTTTGATGATCTGTCATCTACCTCTGAGAAGCTGTCTCACCCCACCGCTAACAGACCAAAGATGGCTGGAAAGAGGCTTCCCGCTCAGTTTGGAGGAGGCCACTCTCCAAACAAGGACATCAGCGTGGAGAAAACCTTCATGTTTGACGAAGAGGACCGCCCCAAGCCAAAGTTGATAGACGCAAGAAAGCCATCCATGCCCAGCTCACACTCCCAGTCTCCCGTCCTCAAGCCCAGCCCATCCCCGTCAGAGGGGCTCAAGGCCAGTGCGGCTTCAGCCCCTGGCCGCAGAAGTCCCAGCCCAGGCCCCTGCGCGGAGACCAAGCCCAAGGCAGAGCCAGAGGAGCGGAAGTCTGAGCTGCAGGACCTCCGAGGCCAAATGAAAGAACTGCTGCTGTCTGTGGAGCTCCTCAAGACCCAGCAAATgagagagatggcagAGCTGAGAAGCGAGCTGGACGAGGAGAGGTTGAAACGAGTGGCCCTGCAGaTGGAGATAGAGAAATTAAAGAAGATGGTTCATTCGACGTGAAGTCTGACCCAATCAGCCTGGAACATCAGTCACCTATCGGTCTGTCTCTAAGTAGAAACAGGAAGGGGACGATGGCATTCCTATAATACTTTTAGTTATCATCAACCTATTCCACATTTGTAAGATTTACATTTTTGCACATATTAAGGTTTTCTAGTTCTAGAAAGGTGATAAATACAGATGTATATGTTTTTTGTTacttagttttttttttgtttctttttgtttTGCCAACACAAACGATCGAGGCCTTACTAACTACTGTGCTGGACTGGCAGTCTCTGCATTCTCTATGGGAATGTGTGAGGGTTGCTCAATACTACTGATTCTGTACAAAGTGTTAGGGGAttcctttttgttttattttttttatgactTGCAGGTAGTTGATTTTAAAGATGATTCTGATTTTCAGTTCAAGTATCCATATTAGCCTcctttagatcataatgaattatATTGTGATATGTTGCTATAGCAACAGTGTTGTACTCCATTGCTATGGCATAAGGGATCATTTTctttggttttttttttttttcttctaacaTTCCTATCCAGGGTAACACTGTTGTGCCTGTTAAACACATATTAAAGTGTTAATATTGGGAGATTACATTTATCAAACTGTTTAGACTTGCTGATGATATATATTTGTAAGTTCTGACAATGTGCTTAGACATATAGAGGGTCCTTTTTTCTTTTTCATGTTGCTCTTCTTGTAAAGGTCACATGGAACGGTTC

Function

NR:

description
CD2-associated protein isoform X3

GO: NA

KEGG:

id description
K13738 CD2AP; CD2-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612084.2 False 3170 mRNA 0.49 19 25060687 25134640
XM_021612085.2 False 3167 mRNA 0.49 19 25060687 25134640
XM_036985112.1 True 3108 mRNA 0.49 18 25060687 25134641

Neighbor

gene id symbol gene type direction distance location
LOC110529665 LOC106571552 coding downstream 50388 24992535 ~ 25010299 (-)
LOC110529662 LOC106571455 coding downstream 265271 24739057 ~ 24795416 (-)
srp09 srp09 coding downstream 611352 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 613747 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 622040 24436497 ~ 24438647 (-)
mep1a.2 LOC106571460 coding upstream 141815 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 155568 25290209 ~ 25294380 (-)
LOC110529673 LOC106571464 coding upstream 161759 25296400 ~ 25304057 (-)
LOC118965601 NA coding upstream 169778 25304419 ~ 25305913 (-)
LOC110529678 LOC106571467 coding upstream 172790 25307431 ~ 25309783 (-)
G689079 NA non-coding downstream 2001 25057588 ~ 25058686 (-)
G689080 NA non-coding downstream 3305 25056785 ~ 25057382 (-)
G689096 NA non-coding downstream 44056 25016332 ~ 25016631 (-)
G689092 NA non-coding downstream 51950 25008528 ~ 25008737 (-)
G689089 NA non-coding downstream 57152 25003307 ~ 25003535 (-)
G689593 LOC106571458 non-coding upstream 82374 25217015 ~ 25221300 (-)
G689606 NA non-coding upstream 98498 25233139 ~ 25236243 (-)
G689620 NA non-coding upstream 118111 25252752 ~ 25317597 (-)
G689644 NA non-coding upstream 170998 25305639 ~ 25306422 (-)
G689659 NA non-coding upstream 210237 25344878 ~ 25345222 (-)
G688922 NA other downstream 323647 24736046 ~ 24737040 (-)
G688537 NA other downstream 379261 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 429638 24629554 ~ 24631049 (-)
G689656 tlr5m other upstream 241481 25376122 ~ 25407347 (-)
G689685 NA other upstream 276182 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 382925 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 529524 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 667323 25801320 ~ 25805570 (-)

Expression


Co-expression Network