XLOC_025760 (zmp:0000001048)


Basic Information

Item Value
gene id XLOC_025760
gene name zmp:0000001048
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53511936 ~ 53522208 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050631
ATGGGGACAAGGAAAGTTCTGGTGACAGGTTGCTCCTCTGGAATTGGGTTGGCGGTGGCTGTCCGTCTGGCCAAAGATGAATTAAGGCGCTTCAAGGTTGTGGCCACCATGAGGGATCTGGACAGGAGAGAAGCCCTGGAGAGAGCAGCTGGAGAAACGCTTAACAGATCTCTGGAGATCCGGCAGCTCGACGCCACCTGTGAGGACTCCATCAGAGACTGTGTGAACAGCCTGCCAGATCGACAGGTGGATGTGTTAGTGAATAATGCCGGCGTGGGTATGATTGGTCCTTTGGAGTGCCAGAGTATGAGCTCAATGCAGGATCTCTTCAATACGAATTTCTTTGGTCTGGTGAGACTGGTCAAAGAGCTGCTGCCCCAAATGAAGAAGCGTCAGAGTGGACACATCATAGTGATGAGCAGCGTTCTGGGCATacaggGGCTACTCTTCAATGATTTGTATGCTGCTTCCAAATTTGCTGTAGAAGGATTTTGTGAGAGTCTTGCTGTACAAGCTATGAAGTTCAATGTCAAGATGACTTTAGTGGAGCCTGGCCCAGTTGTAACTGAGTTTGAGAGGAAAGTATATGAAGAGGCAGAGACGATGGATCTGTCTGAGACCGATGAGGAGACAGCTCAAATCTTCCGACAGATCTACCTGCCATATTCACGCAGAGTTTTTCATTCAATCGGACAGACGCCTGAGGAGGTTGCAGAGCAAACTACCCGGCTGATTTTGTCTAAGAATCCTCCATTTCGTCATCAGACCAATCGTTTGTACATGCCATTGACTGCCATGAAACATGCTGATCCAACCGGACGACTACCCATAGATGCGTTTTATAAAATGATCTTCCAGCATGACCGCATCTTCAGTGCTAGTCTAAATATTATGCGCATACTTAACAGAAAAATAGGTAAAAGTGCTGCCTAA

Function

symbol description
zmp:0000001048 Predicted to enable estradiol 17-beta-dehydrogenase activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytoplasm.

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-8 Predicted to enable estradiol 17-beta-dehydrogenase activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000016213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050631 True 933 mRNA 0.48 6 53511936 53522208

Neighbor

gene id symbol gene type direction distance location
XLOC_025759 camsap3 coding upstream 62499 53352018 ~ 53449437 (+)
XLOC_025758 xab2 coding upstream 161389 53317040 ~ 53350547 (+)
XLOC_025757 stxbp2 coding upstream 237651 53240562 ~ 53274285 (+)
XLOC_025756 pet100 coding upstream 280592 53228684 ~ 53231344 (+)
XLOC_025755 brd4 coding upstream 287656 53116172 ~ 53224280 (+)
XLOC_025761 NA coding downstream 4757 53526965 ~ 53652401 (+)
XLOC_025762 col5a3a coding downstream 251048 53773256 ~ 53919463 (+)
XLOC_025763 olfm2a coding downstream 490500 54012708 ~ 54238460 (+)
XLOC_025764 CU633748.1 coding downstream 545315 54067523 ~ 54067639 (+)
XLOC_025765 NA coding downstream 589181 54111389 ~ 54111972 (+)
XLOC_025429 BX649540.1 misc upstream 23262900 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 628512 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 682930 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 891761 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 1119731 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 1122897 52377578 ~ 52389039 (+)
XLOC_025766 NA non-coding downstream 748495 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 761559 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01096667_01106622 RDH8 coding CI01000113 null 1096322 ~ 1106870 (-)