LOC110529672 (LOC106571463)


Basic Information

Item Value
gene id LOC110529672
gene name LOC106571463
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25290209 ~ 25294380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612102.2
TGTATTAAGAGTATTTAAAGGGCTTTAATTAGTGCTGTGGTATCAGGTCTGTGGTCAACCTCTCCAAAATGTCACTACTGGGGGTCTTGTGCTGTCTGGGACTGCTGCTGTCTCCGTCCTCTGCATTCACgATTAGGCGGATGTCAAAGGAGAAATCCTTTGCCATTGATGCTGATGAGGTGATACGACGAGACATCCCCTTCGTCAACTCAGGATTGAAGACCCCTGTTGTTGAGGGCGACATTGCATTGAATCCTGGACGCAATGCCCTTGTGGATCCAGCCTTCAGGTGGAAATTCCCCATCCCTTACATACTGGCTGACAGCCTTGACCTGAATGCCAAGGGGGTCATTTTCCAGGCCTTTGAGATGTACCGGCTGAAATCCTGTGTGGATTTCAAACCCTATGAAGGAGAGAAGAGCTTTATCAAATTTGAAAAGCTAGATGGGTGCTGGTCTATGGTCGGAGACCTACAGACAGGGCAACAGCTGTCATTGGGCCCATCCTGTGACTACAAAGGCACCATAATGCATGAGCTCCTCCACGCCCTGGGCTTTTACCATGAACAGTCTCGCACCGACCGAGATGACTATGTGGACATCTGGTGGGACCAGGTCCTGCCTGGGATGGACCACAATTTTGATAAATACGCTGACGATTTCATCACCGACCAGAACACGCCATACGACTACGAGTCTATCATGCATTACGGTCCATATTCCTTTAACAAAGACCCACGGTACCCAACCATCACAGCCAAGGACCCAGAGATGACCAAAGTGCTGGGCCAGTACAATGACTTCAGCAGCCTGGATCTACTGAGGCTCAACAGGATGTATAACTGCTCCTCCTCTCTGACCTTGTTGGACCAGTGTGCCTTTGAGACCGTCAACACCTGTGGGATGATCCAGAACCGTAACGATGATGGTGACTGGGTACGCACCATGAGCCAGCCAGAGTCTCATGACCACACTCTCATTGGCCAGTGCAAAGACGCAGGATTCTTCATGAACTTCTACACCGACACCGGCCGGGCAGGCGACTCAGCCTTTCTGGAATCCAGGGTCCTGCACCCCAAGAGGAATCTGCAGTGTTTGCAGTTCTTCTACAAGATGACTGGAAGCTCCAAGGACAAGCTGGTGGTCTGGACCAGGAAGGAGGATGCTAAAGGCAAAGTCTTATCCCCTACTGCAGCTGGGAATTTCATAGGTGATGACGACCACTCCTGGAAGATTGCCCACGTTCCTTTGACGATGGACTCCAAGTTCCGCTATGCCTTCCAGGGGATCAGGGGCGACCCAGCCAACTCCTTGGGGGGGATCCAGGTGGATGACATCACCCTAGCGGAGACACGCTGCCCCAGTGGAACATGGCGAATCAAGAACTTCAGCGAGTACATGAAGAGTTACGCCACAGGAGAGTACATCCAGAGCCCACGTTTCTACAGCCCCGAGGGCTACGCCTTTGGCATCCAGCTGCTACCCAACTCCTACTACGATGGGTACATTGGGGCCTTCTTCCACCTGAGCACCGGGGAGAACGACCAGGCCCTGGAGTGGCCGGCAGGGAACAGACAGGTCACCATCACACTGCTGGACCAGGACTCTGACGTCAGGCAGAGGCAGTCCTTCTCCTACAGCTTCACCACCAGTCCCACTCATCTCATTCCAGACTCCAACATATTGTACTGGGACAACCCGTCCAAGATGGGGACGTACGACCCGTCCTGTGACTGTTATCATGGCTGGACCTGGGGCTGGAATGCCTACTTCTCCCACTACCACCTCAATAGTAGGAGCTACCTGAAGAATGATGACCTCATTCTCTTCGTTGAGTTTGAAGATCTAACTCCGCTGATCAAAAGTGAAGTTCCAATTAAGTCTCCAGTTCAGCTCCGGAGTCAGGACTGAGGCTGTCCAGAACAACTATCAGATGCAGACTTTATGCATTTTTAAATGTCAATGTTCCCTTTTCTTTTTATTTCAAACATTCACAGAAAGGCAGTGGAAGTAAACATTGGCAGGCCTATACAAGGAAATGTGTCAGTTGTAATGTTAAACACTGTCTTGACAATCTGTCTGTGGCCTCCATCTGGATACTGGTTTGTTCATTTGTAGCCTGTGAAATGCACCTCCATGCAGCTTTTAACGGATTAAAATCAAACTATTCAAGG

Function

NR:

description
meprin A subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612102.2 True 2173 mRNA 0.51 14 25290209 25294380

Neighbor

gene id symbol gene type direction distance location
mep1a.2 LOC106571460 coding downstream 2168 25276456 ~ 25288041 (-)
cd2ap LOC106571457 coding downstream 155568 25060687 ~ 25134641 (-)
LOC110529665 LOC106571552 coding downstream 279910 24992535 ~ 25010299 (-)
LOC110529662 LOC106571455 coding downstream 494793 24739057 ~ 24795416 (-)
srp09 srp09 coding downstream 840874 24447416 ~ 24449348 (-)
LOC110529673 LOC106571464 coding upstream 2020 25296400 ~ 25304057 (-)
LOC118965601 NA coding upstream 10039 25304419 ~ 25305913 (-)
LOC110529678 LOC106571467 coding upstream 13051 25307431 ~ 25309783 (-)
LOC110529677 brox coding upstream 16059 25310439 ~ 25320812 (-)
LOC110529676 LOC106571466 coding upstream 29247 25323627 ~ 25326298 (-)
G689606 NA non-coding downstream 53966 25233139 ~ 25236243 (-)
G689593 LOC106571458 non-coding downstream 68909 25217015 ~ 25221300 (-)
G689079 NA non-coding downstream 231523 25057588 ~ 25058686 (-)
G689080 NA non-coding downstream 232827 25056785 ~ 25057382 (-)
G689096 NA non-coding downstream 273578 25016332 ~ 25016631 (-)
G689644 NA non-coding upstream 11259 25305639 ~ 25306422 (-)
G689659 NA non-coding upstream 50498 25344878 ~ 25345222 (-)
G689677 NA non-coding upstream 104895 25399275 ~ 25399585 (-)
G689680 NA non-coding upstream 113417 25407797 ~ 25408072 (-)
G689681 NA non-coding upstream 114292 25408672 ~ 25408969 (-)
G688922 NA other downstream 553169 24736046 ~ 24737040 (-)
G688537 NA other downstream 608783 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 659160 24629554 ~ 24631049 (-)
LOC110529658 LOC106571450 other downstream 850009 24438965 ~ 24446940 (-)
G689656 tlr5m other upstream 81742 25376122 ~ 25407347 (-)
G689685 NA other upstream 116443 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 223186 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 369785 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 507584 25801320 ~ 25805570 (-)

Expression


Co-expression Network