LOC110529673 (LOC106571464)


Basic Information

Item Value
gene id LOC110529673
gene name LOC106571464
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25296400 ~ 25304057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612103.2
ACTTTTTACCATAGCAGACATAAACTTTATCAAGGGCTAAAGGTCCTCTGGTTCACTTGGACACTTAAACCAAAGCAGAAACTCTAGTCTAGCCATATTCATCATGTCCATGCAGACACTTCTCTTCTTGACAGGGCTGGTTGCGCAGTCCAGTTCGTACACTATTCCTCTGTCATCTCGTGTGCATGAGGTATACGGAAACGGTGAAGATGATAACCCCTTACTTAACTTGGGAGCAGAAGAAGACTTGGTTGAAGGGGATATGCTCATTCTGCCAGGACGCAATGCCTTGATTGACACTAAATACAGATGGAAGTTTCCCATACCCTACATTCTGTCAGATGACTTGGATTTGAATGCCAAAGGTTGTGTCCATCAGGCATTTGAAATGTATCGTCTGAAATCTTGCATAGACTTCAAGCCCTACGAAGGCGAGAAGACATACATCAAGTTTGAAAAGAGAGGCGGGTGTTTCTCCAGCGTTGGGGACCAACAGAATGGACAGATCCTGTCCCTGGGCGATGGCTGTGACCACAAGGCTGTGATCGAACACGAGCTCCTCCACGCTTTGGGCTTCTACCATGAGCAGTCTCGCCAGGACAGAGACGACTATGTCAAGATCTGGCTGGACCAGGTCACTCCAGGGCTGGAACATAATTTCAACAAATACGATGATTCCTTCATCACTGACCAGAACACTCCTTACGATTATGAGTCTGTCATGCACTACCGGCCATACTCCTTCAACGTGGACCCCAACATTCCCACAATCACCACCAACATCCCAGAATTCAACAACATCATTGGCCAGTACCTGGACTTCAGCAAACTGGACATGCTGAGGTTGAACAGGATGTATAACTGCTcctcccctctcactctcctggACCGGTGTTCCTTTGAGTACAACAACATCTGTGGGATGATTCAGAGCCCCACTGATGATGCAGATTGGGTCCACACCAAGAGCAGCACTGGGAATGAGGATCACACTCTCATTGGCCAATGCAGAGATGCAGGTTACTACATGCACTTCAACACTAAGACTGGGAAGGAGGACGAGTCAGCTCTGCTAGAGTCTCGCATCCTGTACCCCAAGAGACACCTGCAGTGTCTGCAGTTTTTCTACAAGATGACAGGCGGACCAAAGGACAGACTTGTGATTTGGGTGAAGATGGACGATGGGACTGGGACAGTTCGCAAACTGAAGAAAATACACACCATCTGGGGAGATGCCGACCACACATGGAGGATTGTCCACGTCTCCATGGAGATCGAAGAGAAGTTCCGCTATGCTTTCCAAGGTGTCCGAGGAGATCCATCTACAACCAATGGAGGAATCTTCATTGACGACATCAGCCTGACTGAGACTCGCTGTCCCAACGCTGTCTGGCAGATCAAGAACTTCACCGGAATCCTCAACACTGCAAACAATACCACCGTCATGGACAGTCCAGTCTTCTACAGCCCAGAGGGCTATCGTTACGGTGTACGTGTGCGTCCCGTCTCTGACTACAGTGACTACACAGGTGGCTACACTGGGATGTACTTCCACCTGGCCAGCGGGGAGAATGACGTGGTCATGCAGTGGCCGGCCCTGAATAGGCAGGCTAAAATCGTGGTCATGGACCAGGATCCTGACATTCAATTGAGGATGTCGTCTGCTCGCAGTCTGACTACAGACCTGATTAAGACTCCAGATGGGAAGCTGTGGTGGGACAATCCAACTAATGTGGGGACCTACGATCCAGGGTGTGATTGCTACAGGGGAGAGTCGCGGGGATGGCGCAACATGATCAAGCATTTTGACTTGCGACGACGGAACTACCTGAAAAACGATGACCTCATCATCTTTATCGACTTTGAAgACATAACATCTCTGATAAAAACAGAGGTTCCCATCAACCCAAAGGAGTGAGGACGTATTTTACTGCCACCGAGGGGAGAACCGGCAGTCCTGAGGATTTGGACAGACTCAAGAAGAGTACAGAAAATAACAGCACAATTTATCTAAACTAATGTTGTGAGTAATTATAAATTATTTTGTAGAAAATTGGTTTGAAAACTTTATAAAATTACTAAAAACTCTTGAAATGTTATTTGTTTTTACTGTTCAAACATTCTTATTCACAAATTCTTTCATTAAAGTTTGAGTCTTCAAATAAA

Function

NR:

description
LOW QUALITY PROTEIN: meprin A subunit alpha-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612103.2 True 2166 mRNA 0.47 14 25296400 25304057

Neighbor

gene id symbol gene type direction distance location
LOC110529672 LOC106571463 coding downstream 2020 25290209 ~ 25294380 (-)
mep1a.2 LOC106571460 coding downstream 8359 25276456 ~ 25288041 (-)
cd2ap LOC106571457 coding downstream 161759 25060687 ~ 25134641 (-)
LOC110529665 LOC106571552 coding downstream 286101 24992535 ~ 25010299 (-)
LOC110529662 LOC106571455 coding downstream 500984 24739057 ~ 24795416 (-)
LOC118965601 NA coding upstream 362 25304419 ~ 25305913 (-)
LOC110529678 LOC106571467 coding upstream 3374 25307431 ~ 25309783 (-)
LOC110529677 brox coding upstream 6382 25310439 ~ 25320812 (-)
LOC110529676 LOC106571466 coding upstream 19570 25323627 ~ 25326298 (-)
LOC110529680 disp1 coding upstream 112220 25416277 ~ 25490274 (-)
G689606 NA non-coding downstream 60157 25233139 ~ 25236243 (-)
G689593 LOC106571458 non-coding downstream 75100 25217015 ~ 25221300 (-)
G689079 NA non-coding downstream 237714 25057588 ~ 25058686 (-)
G689080 NA non-coding downstream 239018 25056785 ~ 25057382 (-)
G689096 NA non-coding downstream 279769 25016332 ~ 25016631 (-)
G689644 NA non-coding upstream 1582 25305639 ~ 25306422 (-)
G689659 NA non-coding upstream 40821 25344878 ~ 25345222 (-)
G689677 NA non-coding upstream 95218 25399275 ~ 25399585 (-)
G689680 NA non-coding upstream 103740 25407797 ~ 25408072 (-)
G689681 NA non-coding upstream 104615 25408672 ~ 25408969 (-)
G688922 NA other downstream 559360 24736046 ~ 24737040 (-)
G688537 NA other downstream 614974 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 665351 24629554 ~ 24631049 (-)
LOC110529658 LOC106571450 other downstream 856200 24438965 ~ 24446940 (-)
G689656 tlr5m other upstream 72065 25376122 ~ 25407347 (-)
G689685 NA other upstream 106766 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 213509 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 360108 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 497907 25801320 ~ 25805570 (-)

Expression


Co-expression Network