Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529215 |
| gene name | tlr5 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 25370910 ~ 25378414 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tlr5 | Enables interleukin-1 receptor binding activity. Involved in cellular response to mechanical stimulus; positive regulation of interleukin-8 production; and positive regulation of toll-like receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Implicated in Legionnaires' disease; cystic fibrosis; cystitis; melioidosis; and systemic lupus erythematosus. Biomarker of ankylosing spondylitis; chronic granulomatous disease; cystic fibrosis; and melioidosis. |
| description |
|---|
| LOW QUALITY PROTEIN: toll-like receptor 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036986833.1 | True | 1029 | mRNA | 0.49 | 3 | 25370910 | 25378414 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529679 | NA | coding | upstream | 31293 | 25326353 ~ 25339617 (+) |
| trnas-gcu-5 | NA | coding | upstream | 64598 | 25305888 ~ 25306312 (+) |
| LOC110529668 | LOC106571459 | coding | upstream | 97260 | 25254179 ~ 25273650 (+) |
| adgrf8 | LOC106571458 | coding | upstream | 136747 | 25196806 ~ 25234163 (+) |
| tnfrsf21 | LOC106571462 | coding | upstream | 186258 | 25140777 ~ 25184652 (+) |
| tlr5m | tlr5m | coding | downstream | 20842 | 25399256 ~ 25407350 (+) |
| knl1 | knl1 | coding | downstream | 126599 | 25484214 ~ 25515202 (+) |
| LOC110529684 | rad51 | coding | downstream | 139073 | 25517487 ~ 25521324 (+) |
| LOC110529685 | LOC106571472 | coding | downstream | 148799 | 25527213 ~ 25531103 (+) |
| LOC110529217 | LOC106571473 | coding | downstream | 174023 | 25552437 ~ 25587302 (+) |
| G689276 | NA | non-coding | upstream | 34685 | 25332891 ~ 25336225 (+) |
| G689270 | brox | non-coding | upstream | 50679 | 25319845 ~ 25320231 (+) |
| G689255 | NA | non-coding | upstream | 76155 | 25294370 ~ 25294755 (+) |
| G689309 | NA | non-coding | downstream | 33587 | 25412001 ~ 25413411 (+) |
| G689311 | NA | non-coding | downstream | 35778 | 25414192 ~ 25414507 (+) |
| G689353 | NA | non-coding | downstream | 89015 | 25467429 ~ 25467682 (+) |
| G689374 | NA | non-coding | downstream | 119183 | 25497597 ~ 25498338 (+) |
| G688823 | NA | other | upstream | 309460 | 25058953 ~ 25061450 (+) |
| G688613 | NA | other | upstream | 386084 | 24982729 ~ 24984826 (+) |
| LOC110529210 | ift172 | other | upstream | 1379911 | 23961761 ~ 23991295 (+) |
| LOC110529640 | LOC106571431 | other | upstream | 1846875 | 23484408 ~ 23524035 (+) |
| G686448 | LOC106571417 | other | upstream | 2398074 | 22946501 ~ 22972836 (+) |
| LOC110529690 | LOC106571476 | other | downstream | 300238 | 25678604 ~ 25685894 (+) |
| LOC110529702 | LOC106607944 | other | downstream | 754777 | 26133191 ~ 26195544 (+) |
| LOC110529706 | LOC106571495 | other | downstream | 1002714 | 26381097 ~ 26393547 (+) |
| jag2b | LOC106571712 | other | downstream | 2177870 | 27498161 ~ 27602164 (+) |
| G692343 | LOC106571710 | other | downstream | 2517287 | 27895701 ~ 27895987 (+) |
