XLOC_025761


Basic Information

Item Value
gene id XLOC_025761
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53526965 ~ 53652401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052799
GTCGAACTTTCGTGTCACGTCTATGAAGGCCACACTCCACGCGAAAGGAAGTTGTTCATGAACATCACGAATTCAGTTTTCACCATGTTGCCCAGCAGAGAAAAAGGAAAAAGCCTTAAAGCTTCAGATCACCTCAACCACTGCTGTTGCACAAGAAGGTGGCTCCAGGAACCCGATCTCTGTGAGACGCTCGTAAGAGACTGTCACTCACCGTCTCCGCACTGCAGCTCTCAAAACCTGCCTCAGTCAAAATCACACTTTCACAGAAGTCATGAAGGCCCTCATCAGAGCAATGCGGATGCTAGACTTTGACGAAATGAACTGGAGATTAACATGTCAAAGAAGGCGGAGCTTCATAGCCACACCTACCTATGACATAATCAGCATGGATCAACGGTAGTTCGAAGGTGTTTACCAGCTGGAGTGAACTTTTCCGACGTCAGACTTCGACGAAATGAACCAGAGATTAACACGTCAAAGAAGGCGGAGCTTCAAAGCCACACCTACCAATGACATAATCAGCATGGATCAATGGTAGTTTGAAGATGTTTACCAGCTGGAGTGAACTTTTCCGGTAAGAGCGCTCCCGAAGTCAACTTCGTTTTGAGTTGTAAATGACGTCACACGTTTcgtttttgcttttcatttatccAATGTATACCAGGAGCCTGTATGTTACCTTAAATGTGCTGTTTAAACATTGATGACAGTACATAGGTGTAGATATTTCACATGCTAGCACAGTGATGTTACACCTCGTCACCAACATATTAGCGAAGTGAGTTGATATGCGCCATGTTGACGGTTTGCATCATTCAATCTTGCACTGATTTGATTGAGAACCTGTTGGTATTGTTGATGTGAGAAGTACACTCCCAGACTCTGGAAAACTCACTCAACCTGATCTGTGTTTGTCAAGCCTCCAGATTGTGGAAAACGATTACGAAAACATACTTGTTTATAGGCCACCATGTCTACCCACAGACATAAAGCAAACAAAATGATTGTATATGTCTGTAACAAATACGCTTCTCACACTCTCTTCACAGCTTCTGGCACTTTCCATGAATACAGTGCACTCCGGTGTCTCGTTTCAGTTTGTTTTTAGACCGTTAAGGGGCAtacctttttttgttgttgtgagaACTATTTAATAACTTTGATATATTATCTAGCGCTGCTTTAAATGCTGGTTTTGGCCCATGTCCACCGATTGCAGTGATAATTTTAACATTGAAAATtggttaatatttaaaaaaatctgattaaatatatgtattttttaaataatcaaaatacattttgaaagtaatttgatttgattgatttatttattttgaaaagacaaatcatacacaaaacaattctttaaacaaattATCTTTCAACATGGTCAAAACGGAGCGGGATGAAGCAAAAGCGTATTATTTTCCCCACCCCATTACTACACTCTTCATTCGCCTAttacttgtcttttttttttttgttcttgtctcttctttttacatgagacatataaGCTTTACATGAGACTCATTTTATCCTTTTAGCATCTTTAACATATTATAtatttgattccatttgtacatttacatttagaacATAGACCCAAACAATACATATTATTGCAAACAGccattaattatgtttttatcatacctttctcattttggtcttttaaatatcctctattaatcattttattaatttaataatatatatttttgcaactttttaaattgattaatatcctgacattgAGAATCTGACTTttccataatttcacaccacatgcagacatacacacattttttaaaaagttgtccttgttttcaacctcttAAGAtttcttctctcagattatatcctccttgtttttttttcaaaacacttttgtaTGTGTTTCGGAAgtaatttattcctagctttaaacatgaattgtgctgttttaaatttaaccaaattaTTGAACTTGAGtgtctt
>TCONS_00052381
TCACCATGTTGCCCAGCAGAGAAAAAGGAAAAAGCCTTAAAGCTTCAGATCACCTCAACCACTGCTGTTGCACAAGAAGGTGGCTCCAGGAACCCGATCTCTGTGAGACGCTCGTAAGAGACTGTCACTCACCGTCTCCGCACTGCAGCTCTCAAAACCTGCCTCAGTCAAAATCACACTTTCACAGAAGTCATGAAGGCCCTCATCAGAGCAATGCGGGTGAGATATTTAAAAGCATACTGTTGCAAATGTTATCTGCTCACAGGTA
>TCONS_00052382
TTGATGGCTAATAGACTACAAATGTGTCTCTTCATGTCCAGGTGGCTCCAGGAACCCGATCTCTGTGAGACGCTCGTAAGAGACTGTCACTCACCGTCTCCGCACTGCAGCTCTCAAAACCTGCCTCAGTCAAAATCACACTTTCACAGAAGTCATGAAGGCCCTCATCAGAGCAATGCGGATGCTAGACTTTGACGAAATGAACTGGAGATTAACATGTCAAAGAAGGCGGAGCTTCATAGCCACACCTACCTATGACATAATCAGCATGGATCAACGGTAGTTCGAAGGTGTTTACCAGCTGGAGTGAACTTTTCCGGTAAGAGCGCTCCCGAAGTCAACTGCGTTTTTAGGTGTAAATGACGTCACTCATGTTTCGTTTTCGCTTATCCAAGGGTCTTTAATGCAAGCCATAGTGGTGGCTAAAAAACTAGTGCTTGACAATTGGAAAGCACCATTATACCTCTCATTCCAGAACTGGATTTCTGACAAGATTTATGTTATTCAGATGGAAAGACTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052799 False 1983 lncRNA 0.36 5 53526965 53652401
TCONS_00052381 False 268 lncRNA 0.48 2 53606166 53632347
TCONS_00052382 True 522 lncRNA 0.45 2 53632118 53649626

Neighbor

gene id symbol gene type direction distance location
XLOC_025760 zmp:0000001048 coding upstream 4757 53511936 ~ 53522208 (+)
XLOC_025759 camsap3 coding upstream 77528 53352018 ~ 53449437 (+)
XLOC_025758 xab2 coding upstream 176418 53317040 ~ 53350547 (+)
XLOC_025757 stxbp2 coding upstream 252680 53240562 ~ 53274285 (+)
XLOC_025756 pet100 coding upstream 295621 53228684 ~ 53231344 (+)
XLOC_025762 col5a3a coding downstream 120855 53773256 ~ 53919463 (+)
XLOC_025763 olfm2a coding downstream 360307 54012708 ~ 54238460 (+)
XLOC_025764 CU633748.1 coding downstream 415122 54067523 ~ 54067639 (+)
XLOC_025765 NA coding downstream 458988 54111389 ~ 54111972 (+)
XLOC_025766 NA coding downstream 618302 54270703 ~ 54271345 (+)
XLOC_025429 BX649540.1 misc upstream 23277929 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 643541 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 697959 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 906790 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 1134760 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 1137926 52377578 ~ 52389039 (+)
XLOC_025767 NA non-coding downstream 631366 54283767 ~ 54284185 (+)
XLOC_025768 NA non-coding downstream 637277 54289678 ~ 54303624 (+)

Expression


Co-expression Network