tlr5m (tlr5m)


Basic Information

Item Value
gene id tlr5m
gene name tlr5m
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25399256 ~ 25407350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611227.2
TTCATCACACGGGGCACCGGGCCATGCTAAACGAACGCGCTCAGTACTTGACTTCATCTGAAAGGGGTGTAACCTATCCCATAAACATACTCACCAACTCGACGCATATTTGGCTTATCAGCGCGCTCATAACTTCAGGGGGATGATGAGGAACCTTATACTGCTGGCTATCTTTGGAGAATACCTGCAGGTGGTGAAAAGCAACCCAAAATGCCCAATATATGGCTCTATAGCAGCTTGCACCAGCCAGTCTCTATATCAGGTCCCTGCGCTGCCTCCATACATTACCATTTTGTATATGAGGGATAACTACATCAGTGAGATCAATGAGACATCCTTCTCTGGGCTTGAAGGGTTAAAGGAACTGGACCTCAGTTGGCAACAAGTGAATGGGCTTATTATAAGAACTAACACCTTTCAAAGGCTGGAAAACTTGGCAGTGCTTTATTTAGGGTATAACACAGGTTTACAAATTGAGCCAGATGCGTTTGTGGGACTGTCCAACCTGAGAGCGCTCTCTCTGTATAGGTGTGACCTGACTGAATCTATTTTACAGGGTGACTATCTCAAGCCCCTGGTTTCCTTGGAAACACTAGATCTGTATGGTAACCAGGTGAAAATAATCCAACCTGCTCTATTCTTTGTGAACATGACAGATTTCCAAGAGCTAAACGTTTCCCTAAACCGGATGGAAAGCATATGTGAGGAAGATTTGCTTGGCTTTCAAGGCAAACACTTTCGGCTCCTCAAGTTGAACAGCCTCTATCTATATAGCATGACTCAGTATGGCTTTGACTGGAAACGATGTGGAAATCCTTTTCGGAACATGTCCATGGAGACACTTGACTTATCTTCCAATGGATTTGATGTGGACAAGGCAAAACTGTTTTTCAATGCAATCCAAGGGACCAAAATCCACCATCTTATTCTGGAACACAGCACCATGGGGAAATCATTTGGTTTCAGCAATGTGAAAGACCCAGACAGGCAAACATTTGAGGGCCTCGAGAATAGTAGTGTCAAGATTCTAGATTTGTCCAAATGCTTTATATTTACATTGCAATATGCAGTATTCAGTCCGCTGAGAGAGGTAGAGGACATAACAATAGCCCAAAACAAAATTAACCAGATTGACAGGGAGGCGTTTTTTGGTCTTCAAAATGTACAAAAGCTCAACCTGTCACACAATCTTATAGGGGAAATCTATTCTTACACGTTTGACAATCTACCCAATATTTTAGAACTAGATATATCTTACAACCATATTGGTGCATTGGGATATCAGGCATTTAAAGGACTTCCAAACCTACAAGTTCTGGATCTTACAGGAAACTCTATTCGGGGACTAGGTACATATGGTTCTCTTGCACCACTACCAAACATCCAACTTCTTCGTTTGGCTGATAATAAGATTACATCCTTAGAGGGCCTCTCTGTCTTTGCTCCTAATACGATCATACTTAATGTTCAAAACAACAGGTTAACTAATTTAGAGGATGTATACACAGTTTTAGCTAAATTAATGCACATTGAGTTTCTCTGGTATGGTAACAACTTCATAAAGTGGTGCACCCTTAACAATAATATTTCAGTGCCAGCTGTGAACTCTCTGAAGCTGCTTGAGCTAAGGAACATCGCCTTGCAGATGATATGGGCACGGGGAGAGTGTATGCATGTATTTCAACATCTTGGCAAGCTTTTAAGTCTGGATTTAAGCTTTAACTCCCTGCAGGCTCTCCCAGATGGTATATTTAAAGGCCTCATCTCTCTGGAAGAGATGGATCTTCACTTCAACTCACTCACATACCTCAAACAAGACATTTTTCCAGAGAGTCTCAAAACGGTTGATCTCTCTTACAATTTCCTGGCCTCTCCTGACCCAGAAGCTTTCCATTCTCTCAGCTGGATCAACCTGTATAGGAATCAATTCCACTGTGACTGCGGTCTGGAGGACTTTCTGACGTGGCTGAAAGGGACTAACGTGACTTTTCCTGACCCTGGCGTGAATGAATTCAGCTGTGAGTTTCCTTCAGATCTCCATGGCATCAGCCTGTTGAATTTCAGCTCAGTCATATCGTGTGAGGAGGATGACGAGAGGCTGGTTCAGGAGCTGAGGCTCTCGCTCTTCATCGGCTGCACAGCGCTCATCATCCTGATCATGGTCGGATCAATCGTTTTCGCTCGTCTCCGTGGATTCCTCTTCAAAGTTTATAAAAAGTTGACTGCCAGGATCCTTGAGGGCCCTAGGAGGGATCCTTCTGCTGATGGGCCTCGGTACGACGCTTACTTATGCTTCAGCAACAACGACTACAAGTGGGTAGAAACCGCCCTGTTGAACAGACTAGACTCTCAGTTCGCGGAGCGAAACGTCCTCCGCTGCTGCTTCGAGGTCAGAGACTTCATCCCAGGTGAAGATCACCTGTTCAATATCAGGGACGCCATATGGGGGAGCAGGAAGACCGTTTGTATCGTCTCTAAAGAGTTCCTCAAGGACGGCTGGTGCCTGGAGGCCTTTACCCTGGCTCAGAGCAGGATGCTGGAGGAGCTCAGAGATGTTCTCATCATGGTGGTCGTGGGGAATGTCCCCCATTACAGACTGATGAAACATGAAGGCATTAGGACCTTTGCCCAGAAGAGGGAGTACCTGCAGTGGCCGGAGGACACACAGGATATTCAATGGTTCTATGAGAAGCTCATGTCCAAGATTCTTAAGGACAAAAAGTACACCTCCAAAGATAACAATAGGGATATCACACTTGTAAATATGACAGTTGGAActtaatgttgttgactcatttTTCCACAGCCTGTATGCTTAAGCGAAAATCTTATTTAACTGTACTGTGAATTCTTACATCAGTCATTTTTATTTTGTCTGTATAGCATTAAGAACTTTTCCCATATTGATTACAGGCAAAATGGAGAGGGTCCTCTGTCTTTTGGCATAGCTTGTTTTTGACCACTAGGTGGCAGTCAACCTTTATTCACTAATATTGGAACTGTGAAACGTTACCTTctgtataaatcaaatcaaattttattggtcacatacacatatttagcagatgttattgccggtgtagcgaaatgcttctatttttggaagttttttttttaatgaaagaaataacaaataacaaaaatCAAAATACTGCGAAATTGCTTTGgcgctagaagcagagctgccatgtctgtcggcgccatctatGATTGTGTTTTGCAGTGTGTACAATGCAAAGTTCTCGTGGCTTACATTTACACGTTGTAATATAACTAATGTAAGGATTTTGGTACTTTTAATAAAACATTCCAACTTCTCTACTA
>NM_001124744.1
ATGATGAGGAACCTTATACTGCTGGCTATCTTTGGAGAATACCTGCAGGTGGTGAAAAGCAACCCAAAATGCCCAATATATGGCTCTATAGCAGCTTGCACCAGCCAGTCTCTATATCAGGTCCCTGCGCTGCCTCCATACATTACCATTTTGTATATGAGGGATAACTACATCAGTGAGATCAATGAGACATCCTTCTCTGGGCTTGAAGGGTTAAAGGAACTGGACCTCAGTTGGCAACAAGTGAATGGGCTTATTATAAGAACTAACACCTTTCAAAGGCTGGAAAACTTGGCAGTGCTTTATTTAGGGTATAACACAGGTTTACAAATTGAGCCAGATGCGTTTGTGGGACTGTCCAACCTGAGAGCGCTCTCTCTGTATAGGTGTGACCTGACTGAATCTATTTTACAGGGTGACTATCTCAAGCCCCTGGTTTCCTTGGAAACACTAGATCTGTATGGTAACCAGGTGAAAATAATCCAACCTGCTCTATTCTTTGTGAACATGACAGATTTCCAAGAGCTAAACGTTTCCCTAAACCGGATGGAAAGCATATGTGAGGAAGATTTGCTTGGCTTTCAAGGCAAACACTTTCGGCTCCTCAAGTTGAACAGCCTCTATCTATATAGCATGACTCAGTATGGCTTTGACTGGAAACGATGTGGAAATCCTTTTCGGAACATGTCCATGGAGACACTTGACTTATCTTCCAATGGATTTGATGTGGACAAGGCAAAACTGTTTTTCAATGCAATCCAAGGGACCAAAATCCACCATCTTATTCTGGAACACAGCACCATGGGGAAATCATTTGGTTTCAGCAATGTGAAAGACCCAGACAGGCAAACATTTGAGGGCCTCGAGAATAGTAGTGTCAAGATTCTAGATTTGTCCAAATGCTTTATATTTACATTGCAATATGCAGTATTCAGTCCGCTGAGAGAGGTAGAGGACATAACAATAGCCCAAAACAAAATTAACCAGATTGACAGGGAGGCGTTTTTTGGTCTTCAAAATGTACAAAAGCTCAACCTGTCACACAATCTTATAGGGGAAATCTATTCTTACACGTTTGACAATCTACCCAATATTTTAGAACTAGATATATCTTACAACCATATTGGTGCATTGGGATATCAGGCATTTAAAGGACTTCCAAACCTACAAGTTCTGGATCTTACAGGAAACTCTATTCGGGGACTAGGTACATATGGTTCTCTTGCACCACTACCAAACATCCAACTTCTTCGTTTGGCTGATAATAAGATTACATCCTTAGAGGGCCTCTCTGTCTTTGCTCCTAATACGATCATACTTAATGTTCAAAACAACAGGTTAACTAATTTAGAGGATGTATACACAGTTTTAGCTAAATTAATGCACATTGAGTTTCTCTGGTATGGTAACAACTTCATAAAGTGGTGCACCCTTAACAATAATATTTCAGTGCCAGCTGTGAACTCTCTGAAGCTGCTTGAGCTAAGGAACATCGCCTTGCAGATGATATGGGCACGGGGAGAGTGTATGCATGTATTTCAACATCTTGGCAAGCTTTTAAGTCTGGATTTAAGCTTTAACTCCCTGCAGGCTCTCCCAGATGGTATATTTAAAGGCCTCATCTCTCTGGAAGAGATGGATCTTCACTTCAACTCACTCACATACCTCAAACAAGACATTTTTCCAGAGAGTCTCAAAACGGTTGATCTCTCTTACAATTTCCTGGCCTCTCCTGACCCAGAAGCTTTCCATTCTCTCAGCTGGATCAACCTGTATAGGAATCAATTCCACTGTGACTGCGGTCTGGAGGACTTTCTGACGTGGCTGAAAGGGACTAACGTGACTTTTCCTGACCCTGGCGTGAATGAATTCAGCTGTGAGTTTCCTTCAGATCTCCATGGCATCAGCCTGTTGAATTTCAGCTCAGTCATATCGTGTGAGGAGGATGACGAGAGGCTGGTTCAGGAGCTGAGGCTCTCGCTCTTCATCGGCTGCACAGCGCTCATCATCCTGATCATGGTCGGATCAATCGTTTTCGCTCGTCTCCGTGGATTCCTCTTCAAAGTTTATAAAAAGTTGACTGCCAGGATCCTTGAGGGCCCTAGGAGGGATCCTTCTGCTGATGGGCCTCGGTACGACGCTTACTTATGCTTCAGCAACAACGACTACAAGTGGGTAGAAACCGCCCTGTTGAACAGACTAGACTCTCAGTTCGCGGAGCGAAACGTCCTCCGCTGCTGCTTCGAGGTCAGAGACTTCATCCCAGGTGAAGATCACCTGTTCAATATCAGGGACGCCATATGGGGGAGCAGGAAGACCGTTTGTATCGTCTCTAAAGAGTTCCTCAAGGACGGCTGGTGCCTGGAGGCCTTTACCCTGGCTCAGAGCAGGATGCTGGAGGAGCTCAGAGATGTTCTCATCATGGTGGTCGTGGGGAATGTCCCCCATTACAGACTGATGAAACATGAAGGCATTAGGACCTTTGCCCAGAAGAGGGAGTACCTGCAGTGGCCGGAGGACACACAGGATATTCAATGGTTCTATGAGAAGCTCATGTCCAAGATTCTTAAGGACAAAAAGTACACCTCCAAAGATAACAATAGGGATATCACACTTGTAAATATGACAGTTGGAActtaa

Function

NR:

description
membrane-Toll-like receptor 5 isoform X1

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0001819 positive regulation of cytokine production biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0034146 toll-like receptor 5 signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
K10168 TLR5; toll-like receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611227.2 False 3324 mRNA 0.43 2 25399256 25407350
NM_001124744.1 True 2640 mRNA 0.44 1 25404169 25406808

Neighbor

gene id symbol gene type direction distance location
LOC110529215 tlr5 coding upstream 20842 25370910 ~ 25378414 (+)
LOC110529679 NA coding upstream 59639 25326353 ~ 25339617 (+)
trnas-gcu-5 NA coding upstream 92944 25305888 ~ 25306312 (+)
LOC110529668 LOC106571459 coding upstream 125606 25254179 ~ 25273650 (+)
adgrf8 LOC106571458 coding upstream 165093 25196806 ~ 25234163 (+)
knl1 knl1 coding downstream 97663 25484214 ~ 25515202 (+)
LOC110529684 rad51 coding downstream 110137 25517487 ~ 25521324 (+)
LOC110529685 LOC106571472 coding downstream 119863 25527213 ~ 25531103 (+)
LOC110529217 LOC106571473 coding downstream 145087 25552437 ~ 25587302 (+)
LOC110529686 pura1 coding downstream 180093 25587443 ~ 25600542 (+)
G689276 NA non-coding upstream 63031 25332891 ~ 25336225 (+)
G689270 brox non-coding upstream 79025 25319845 ~ 25320231 (+)
G689255 NA non-coding upstream 104501 25294370 ~ 25294755 (+)
G689309 NA non-coding downstream 4651 25412001 ~ 25413411 (+)
G689311 NA non-coding downstream 6842 25414192 ~ 25414507 (+)
G689353 NA non-coding downstream 60079 25467429 ~ 25467682 (+)
G689374 NA non-coding downstream 90247 25497597 ~ 25498338 (+)
G688823 NA other upstream 337806 25058953 ~ 25061450 (+)
G688613 NA other upstream 414430 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1408257 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1875221 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2426420 22946501 ~ 22972836 (+)
LOC110529690 LOC106571476 other downstream 271302 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 725841 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 973778 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2148934 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 2488351 27895701 ~ 27895987 (+)

Expression


Co-expression Network