knl1 (knl1)


Basic Information

Item Value
gene id knl1
gene name knl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25484214 ~ 25515202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612117.2
AGGTTTTCTGACTGCGCATGCTCAAGAGAGGGCGGTTAAATTCAAAACCAACAACAGCTTTGACGCTTAATAGCTGGCATCTAAAATTGTACTTGAACAACTAGTAGCTACACGATGGAGCCGCCTGATGCTGCATCAAGGACGGATGATCATGTTGGATCCTCCAAACGGCGTATTTCTTCGATCCTGAAAGTTCCACGGACATCTATCAAATTCACTGGCCCAGAGCTAGAGGAGAGTCGGGTGGAGGTGGTCAAGCCAGTAGAGAAGAGGATCTCCAGAAGAGTCAGTTTTGCCACTTCCAATGATGTTCTACTGTTTTCAAAAGATGTGAAGAATGGCTCCCCTGTCCGGAGTCCTCTAAAAAACCTCACAACTACGGCAGAAAACATAAGCATTCATACGGGTTCCATTGATGGTTCTCAACCAATCACAGGCATGGAAACCTTGTTGAATGCTCCCCTCCATGTTTCACAACAAATAAATAAGGAAAATGTAATGTTCAACCAGGATGATTATGGGGAGAAAACAATGATGTTCACAGGAGAGGACACAGCATTTATGGATATGACTCACAGTCACACAATACTCATCGCCAATGATTCAGAATCATCAGTTGTTCTGCCAAATGAAATCAATGTGACTACACCTACCTGTGGAAACATGGATTTTACTTTTTCAATGGAGAAAGGTAAAACTGGGTGTTTTCAGGACTCAACAGAGAATTATGTCCCCTTTAAAAACCCTTCCACCTTAGCCAGAGGTATAGATCCAGAGTTTGAACATTTCCTTGCCAGTATAACGAAGTCAAGTGGCCCCATGTGTAATCCAATAGCTCCCAAATCCTCAACTACTGTGGCATTCCACAGAGCTGCATCCCCTCCAGAAAAAACGAACAACAGACGTTTCCTTGCTGCGCTCAATGCCCGCAGGTCAGGAGTTGATCAAGAGAATCAGCTCCCAGCTTTGTCAGCAACGGGGGGAGACGGTACAGTGGGCTCAATTATCCCTAAAAGGCAAGGGCCTCAGTTCATGAATACATCTACGATGCAAACTGAACAAGATCAAATGGATCTGACAAAAAGCCATACCACTTTGATAGATGGCAAAGGAGTTTTTCAGTGTGTGCAAACTGTAAGCTCTGAAGAGCAACGGCTTAGGGGAAGCACTTTCAGCCAGGTAACTGTCTCTACTGATCCAGATGAAATGGAGTTGACCAGGAGCCAAACTGTTGCCATTGACTCCAAAGCCATTTGGATGTTTGGGCCAAATCCCTCTCAGAAAATTGATAGGAAAAGTGTGGTCTTCACATCAGATCCCAATAAATCCCAGATCTTCTCAGGTGATGACCATGGCATGGAAATAACTTCAGCTCTCAATGTACCTCTCCAGGAGAATGTGTGTGCTCTGACCAAGAAAGGTGAATCATCACCCTGGATGTTTCCCCCAGAAAACAGAATCCCCTCCGTTCAGCAAAATCAACAGACCTTTCATAGCACCTCTTATACATACTCAGATGACATGGAGATGACAAGATGTCAAACAGTTGCCATTGATTCCAAAAGTGTAGCCCTAACGGAAATTCCCTTACTAGGGAATTCAAGGAAGAGTTTGTCTTTTATGCCAGCCTCTCATAGAGGTGTGTTTTTTTCAGAAGATGGCAACGGTATGGATCTGACTGAGGCCCTCACTGGAAATATTGTGTCAAACAGCCATATAGCAATTAATAAGCCACTACAGAGCTTGTTCCCCACAACAGAGATGTCCTTTCACTCTGATCTGAGTACTAACATGGAGATGACTTCAGGACAGAGAAGTAATAAAGTATGGGAGCCTGCATCCTCTGATCCTGATGACATGGAAATCACAAAAAGCCTAACTGCTGTAATTGATTCCAAATATTGTGTGATGGAGAAGCCTTCTCTTAGCAAACCGAAGACCAAGTTTGACCTGGGTCTATCCTATGTGCCACCATCTATGGAATATGGCAATTTCTCAGACGATGCTAATAGTGTGAAGAGGGCGCTGGATCAGGTTAAAGGTTTTTCTGTAGCCATATCGGATCCTGATGACATGGAAATAACTAAAAGTCAAACTGTTGCCATCGACACCAAAAGCCTCAATGTGGTCAATCGCACGCAAAACACAAGGAAAAGTATATCCTTCATGTCAGCTTCCAACAGACCCAGTCATATGTCAGAGGATGACTGTGGTATGGACATGACCAAATCTCTCACTGTGTCTATAGATCACAGAAATGGACTGAACGTGACAGATGAGACCACTGGCAGATTGTTCCCCATATCAAAACACCAAAAGGAAACATTTGAGAAGAGCCTGATTAGAGCAGAGCTTAGTACAGATGACATGGAAATCACAAGGAGCCAAACAGGGGTTATTGACACCAGAGGTTTTGGTGGTGTAACTCCTTCACTCCAAGGTGGTAGAGGAAGATTTGTCGGCTTTTTGGATTCAAATAAAACTCTTATTGGGGAGGACAACAATTGTATGGAGATGACTCAAGCTCTCACTGCACAGATATTAACAAATGTGTCACATTCTGCCCATGGGGGTGAGACCTTAGCTAGGATGTCCACAATCTCAAAGACAAATTTCACTGGAGCAAAGGGCAATCATTTCGTGGAAGTGGGTCACAAACCTGATCAACGTTGGGCATCAGATTCAGATGACATGGATATGACGAGAAGTCAGACCGCTGTAATTGAGTCTGAAAACATCAAGATGGGGAATCGTGACCCTTTCGGGGGAAGGCAACGTTTATCCAGTGTGAGTAAGACCCTGCAGATGGTTCCTCCGGCAGAGCAGAGTGCACATGGTGAGATTACGTTTCAGTTAGGTGTTGAAAGCCTCTGCAGTGAAAAGGCACCTACATCTTCTGActctgatgaaatggaactgacaaGGAGCCAGACTGTTGCAATTGAATCCAAAGTTATTAACATGATGTTTTCCCCTGAAACAAATCCACCTTTAGGGAATGTGTCAATTAGTCAGGCAAATTATATGGAAGTGAAACGAGTAGCAGAAGCGACACGTTGCAGAAATAATCCTGTAGCTGTACCCTCTAACCTGGAGGAGAAGAAAATGGCCAGAGATGAAACTGAAATGTTTTCTGAGGATCATGAAATGGAGATGACCAAGGCTGTCACAACGCAAATTGAACATGCACCTACCAATGTGAAGGGCCCTTCATCCACCACAAATGCAATTTCCTTGTGTCTACCGGAGGGTCACCCTAGAGAAATCCCCACTAACCTTACAGAACACTTTGACCTAAAGGGATTGGCAGACCGAAATGATCCTGATCTGAAAGATGAAGACTGCTCCTTTATTCCTAACAATCCAGAAAGCTCTCCCATTGCCTCTTCAGTCTCAACAGAAGATAATGTACCTTTGAAGAAAGCAAAGACCAGGCGAATGAGTTTGGCAGATCTGCAGTTGAAACTTAATCATATGAGCCGCATGATAAATGAATCCACTGAAGTGATGGGTAGCTGCACTGCACCTTTATCTCACCTGATGAGGACCTCTGACCAACACAGTGTAGAGACAGAATCATTCTCAACTGTAGACTATGGGTCTAAAACCATGGGATTAATGACTGAGAGACCAACAAGTGTCAACTTGGAAGACCATATTATTCACAATGACAAACCTAATATGACTGCTCCTTTAAACTTGAAAAGTAAATGCCTGTCATTTGGTGGTTTCCTGCCCAAACTCCCACAAATAGCCAAACCCTCTGAATCAAACCAGTCCAATAACGTGACAGATTTTGGGAAACTTCTGAAGAAGAATAGCTTGGGTGGCACTCATGAACTGAGGAGCAACACCTCGATGGAGAACATTGACGATGAAGTGCTTCCAGACATTAGCAGTGAAGAGGACTTATCAGAAACTATGGGCACCAAGTCACCTCAGAGGGTCGACGACAAAGGAAATCTTTTCTTAGGCAAGGTGGTCAAGGATGTTGTGGAGCATGAGGTCTTTAAAGAGCCGGTCCTAACTGTTACCCAATGTCAGAAGAGGCCCCTACCAGAAGAGGGCCATGATGACTCCATGGATGAGGTAAAGAGGAATAAGCCATCAACAGAAAACATCAGAGAAATGATCCCCCACACACCAGTAGTTCAGTGGGACATTAACTTTACAGCTGCAGCTGATGGCTCCAGCAGCAACTCCAACCTCCGATGTGAGGGCACATTTGAGTCGTCAACTTACAGACAAAGCCAATTCGAGTCCCTGCTTGACAACACCGGGGACTACACATCTGATGTACTGAAGAAACTCCAAGATGGCAGCATTACAGTGGCTGAGTTCCTGAAACTCTTCAGCATCGACTTTGTCATCCATAAACCTCGACAGAGTATTCTGCCTGCGAGAATTGTGTCGGATCTCGATCGCAAAACAGAGGACTTGTTAATCGAGAAACATATCAACCGTCCCAAACAGAGGGTGTATGAGACAGACTGCCAGATACTCACAGAAATGGTGGAGGGGTTGAAAGCACGTCTGAGAGACCAAGACAGTCTTCTGCAAAGTGTTAATGGAACACTTTGGGAGGCGGCGAAGGGCTTTTCAGATGAAGAGTTGCTGCTTGTTGGTTCAAAGTTGAAAGAGAGGAGAACATTCTTCAGAAAGAGAAGCAAAGTGCGATCTCATGAAATGAAAGCAGTTTTGTACTCTGACCTTGTGCACACAACTCGGGAGGCACAACATAACTTGAGAGGAAATATTGAGAAGACCGATCAGTGTCTGAGAGACCTTGATGAATGTCTACATGACCTGGAAGCTGAACTTACAGCTGTGGAGGGCACAGGGGTAGAGGACTGTGAGCCAACCTTGAAAGCAAGGCAGCAAGGCTTGGAGAAGGTCAACAAAGCAATTGCTGAAAGTGAAAGGCAAATGTGTGAATTGAAACTACAGAAGATAAACTCTGTGGACAAAGTGGACAGACTCCGAAAGGAAACTCTGGAACTTGAGAAACATATTGCCATGCTGGATAGAGTGAATGAATGGAAGTTTGTGCAGAAAGATGACATGAAGACAGTCTACAGCTTTCTCTACGAGTCCTTGCTGTTGGAGGTGCAGTTTGAGAAACCTAACGGAGAGGTCTGTGAACAGACTGAGCGTAACATCATGGACATCACATTTCAACGCCAAATGGATGATGAAAAGTCACCGTGCTACTCTCGGCTTGTACACAATCTGCTATGCCAGTACATAGGCAGTGAAACCACTTGGTTCAAGAAGTACCCCACCAGTCGATACATTCCCGTGctgctgcatgatgtggGTCTGGTGGTAAGCCGCTGTCGCCTCCTGGGAGAAGAGATCCACCTGATGAAGAAGTGGGGCGCTCTGAGGCTGGACATCCTGGACATCAGCTGTGTGGACACACAAGTTCGAATCCTGTTCTCCAGTCTCAAGTCGTTTAGCAAGTTTGAGATGACAGTAGCCGTCACCTCCGCCTACCCCTTCGGTCTCTTTCATGTGCAAAACTTCCAAAATCACATTGGAAACGCAACaaAAGACCAGGTGGAAGACATTGTATCATCAGTCACACCAGCCAAGAACTACTTGACCAAGATTGTCAAGAGGATCCATGAAAGTCTGCTGTGCTGAGACCAGTTCCAGTCAATGGCTATTCTATGTAgtgcagggctgcccaaccctcttcctggggatctactgtcctgtaggttcagtccaaccctaatttaacacacctgattctactaagtagctgctcaacaagaccttgactagctgaatcagatgtgctaaattagggttggactgaacctacaggacagtagatctccaggatgagggttgggcagccctgatgTAGTGAATGAAAATGTGTGTATGTTTCAATTCCATTTGTAAATGTTCAATGCCACATTGTCTTGTTTTAATTTTACATGTTTTCTACCATAAATTTTGATAATTTGTATAATTTTTGTTCATACGGGATCAATAGTAATAGTTGGCCATTTCAAACATCTTTGATGTATTTCCTCTAGCAAAACTATGGCAAGAATTACAATAactgaaaaaagcttgtctgaATCATTATTAAAATGTAACTGCAACTTTTAC
>TU784867
CTGAGCCTACaggacagtagatctccaggatgagggttgggcagccctgatgTAGTGAATGAAAATGTGTGTATGTTTCAATTCCATTTGTAAATGTTCAATGCCACATTGTCTTGTTTTAATTTTACATGTTTTCTACCATAAATTTTGATAATTTGTATAATTTTTGTTCATACGGGATCAATAGTAATAGTTGGCCATTTCAAACATCTTTGATGTATTTCCTCTAGCAAAACTATGG

Function

symbol description
knl1 Predicted to be involved in attachment of spindle microtubules to kinetochore and protein localization to kinetochore. Predicted to act upstream of or within cell division. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly and primary autosomal recessive microcephaly 4. Orthologous to human KNL1 (kinetochore scaffold 1).

NR:

description
Wu:fd18f09 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612117.2 False 6126 mRNA 0.44 25 25505013 25515202
TU784867 True 241 lncRNA 0.34 2 25484214 25515137

Neighbor

gene id symbol gene type direction distance location
tlr5m tlr5m coding upstream 97663 25399256 ~ 25407350 (+)
LOC110529215 tlr5 coding upstream 126599 25370910 ~ 25378414 (+)
LOC110529679 NA coding upstream 165396 25326353 ~ 25339617 (+)
trnas-gcu-5 NA coding upstream 198701 25305888 ~ 25306312 (+)
LOC110529668 LOC106571459 coding upstream 231363 25254179 ~ 25273650 (+)
LOC110529684 rad51 coding downstream 2285 25517487 ~ 25521324 (+)
LOC110529685 LOC106571472 coding downstream 12011 25527213 ~ 25531103 (+)
LOC110529217 LOC106571473 coding downstream 37235 25552437 ~ 25587302 (+)
LOC110529686 pura1 coding downstream 72241 25587443 ~ 25600542 (+)
LOC110529687 LOC106571474 coding downstream 92738 25607940 ~ 25651987 (+)
G689374 NA non-coding upstream 6675 25497597 ~ 25498338 (+)
G689353 NA non-coding upstream 37331 25467429 ~ 25467682 (+)
G689311 NA non-coding upstream 90506 25414192 ~ 25414507 (+)
G689309 NA non-coding upstream 91602 25412001 ~ 25413411 (+)
G689294 tlr5m non-coding upstream 97915 25377933 ~ 25407098 (+)
G689393 NA non-coding downstream 19677 25534879 ~ 25535162 (+)
G689395 NA non-coding downstream 24142 25539344 ~ 25539646 (+)
G689396 NA non-coding downstream 25597 25540799 ~ 25541075 (+)
G689397 LOC106581772 non-coding downstream 25971 25541173 ~ 25541404 (+)
LOC110529690 LOC106571476 non-coding downstream 169323 25678604 ~ 25685894 (+)
G688823 NA other upstream 443563 25058953 ~ 25061450 (+)
G688613 NA other upstream 520187 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1514014 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1980978 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2532177 22946501 ~ 22972836 (+)
LOC110529702 LOC106607944 other downstream 617989 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 865926 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2041082 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 2380499 27895701 ~ 27895987 (+)

Expression


Co-expression Network