XLOC_025762 (col5a3a)


Basic Information

Item Value
gene id XLOC_025762
gene name col5a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53773256 ~ 53919463 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050632
GGCTTGTGGTGTTTGTGAGTGGTAATCTGCTGctcgtgtgtgagtgtgtggaggTGACGGTTCCTGAACATGCGGCGGCTGAAGGAGACTGTGTTCTGCGCGGCACTGCTGCTGCTTCTTACTATGTGCACCCTAAAGACACATGCAGCTAATGTGATGGATGTGCTGAGGGCACTGGAGCTTTCTGAAGACATGGAGGGGGTTACAGTGGAGGCCGGTCTGTGCACAGAGAGAAAGGGCACTTCAGAAACAGACATGGCTTACAGGATAGATAAGAAAATTCAGCTCAGCGCCCCGACTAAACAGCTCTTTCCAGACTCCGCTTTCCCTGAGAACTTCTCTCTGATGACGACGGTGAAGGCCAAGAGAAACTCTCAGTTCTTCCTGCTGTCTTTGTATGATGAGCAGGGGGTCCAGCAGCTGGGCCTTGAAATGGGCCGGTCACCTGTGTTCCTCTATGAAGACCACAAAGGCCAGCCGGCTCCAGATCTATACCCTTTATTTAGAAAAATCAATCTTTCGGATGGCAAATGGCATCGGATCGCCTACAGCGTGGAGGGAAAGTCGGTTACGCTGTACCTGGACTGTAAGAAAGTGCAGACACTGGAATTAATGCGCGGAGATGATCCTGTGGTCAGCACTGATGGAGTTATCGTGTTCGGGACGAGGTTATTAGATGAGGAGGTTTTTGAGggCGAGATCCAGCAGCTCCTGCTTGTGGATGATCCTCAGGCTGCGTCTGACTACTGCCAAGATTACATTCCCGATTGTGACAGTCCTTTGCCCTACAGTGCACAGAAACTGGATCCTGAGGAGGCCAGTCTCATCCATAACCTTGATGACGTCATGCAGGGAGATGAGCCTGTGAAACCAACTAAGCGTTCCAAAAAAGACCGCAAAggcaaaaagaacaaaaaaaggaAAGGCAAGAAAGGCAAAAAAGAATCCCGTAAGAAGAAAAAGGAGGCTGAAGCTCTTGAAGAAGGCTTCCTCGAGGTATCTTCTAAGCTGCCGGAGTATTTAGCTCAAGAACCTGTTCGAGAAACTACACCAGCTTCAACAAAGCTACCAGATCCACCTACGACCGAGCAGCTAAAGATGCCAGTAGAGTCTCCAACAATAATGATTGATCTGATAGACTCCATACCTGACATGCCAACTCATGAACCTGACACCTATCAGGACAGCAGTCCCTCTACAAAGCCTGTGACAGATCTTGAGGACCAAGCCATTTTGGCTTCTGCATTTTCTGAGTCCCCAAAGCAGGAGAGGCCGATTAAAACACCAGAGGTCGAGGAGTTTAGTGATGACCTTTACGGCGATCAGCACAATGTGCTCTCAGTCTCCACAGTGACAGTCGGCCCCAATATCACTGATTATGAGGTCTTGGAGTACGAGGAGTTTAAAAATGCCTCAGACAGCCACGAGCTGGAATATGAAGAGTATGAGATTTATGAGGAGCGATTTGACCATGCAGAGAGGGAAAGGCCAGACACATGGGGCGGAGAAGGTGTGCGATTTGCAAAAGGACAGAAGGGAGAGCCAGCTGTCGTTGAACCCGGTGCAGTTTTTCAAGGACCTCCCGGCCCACCAGGTCCACAAGGTCTTCCAGGAATTCCTGGAATCACAGGACCCCCGGGACCCAGCGGAGACCCAGGTGATGTGGGTCCAGAGGGACGTCCGGGGCTGCCTGGTGCTGATGGGATACCGGGTCCTCCAGGCACTATGCTCATGTTACCCTTCCACTATGGAGGAGACTCTCAGAAAGGACCCATGATTTCAGCTCAGCAGGCACAGGCTCAAGCCATCTTACAGCAGACCAAACTTTCACTGAAGGGCCCTCCAGGTCCATTAGGTCTCACAGGGAGGCCAGGCCCAGTGGGTCTTCCAGGTCCCAGCGGACTGAAAGGGGACATTGGAGAGAACGGGCCTCCGGGGCCACGGGGGTTACCTGGTTCTGCTGGTCCTAATGGGAAACCAGGGAAGAGGGGCCGTTCAGGGGCAGATGGAGGGCGAGGGGCGCCTGGAGAGACAGGAGCAAAGggtgACAGGGGCTTTGATGGACTACCTGGCCTTCCAGGGAACAAAGGACACAGAGGAGATAGGGGGAAACCAGGACCCCAAGGCCCACACGGAGAGCCTGGTCACAAGGGTTCGGATGGACCTGTTGGACCAAGAGGGCAACCGGGAGAACCTGGGATAAGAGGACTTGTGGGGCCAAGAGGGCCACCTGGACCACCTGGGCAGCAGGGAATTCAAGGCGTTGATGGTGTTCAAGGGCCAAAGGGCAACTTGGGACCCCTTGGAGAACCCGGACCTCCAGGTCAACAGGGGAACCCAGGCATACAAGGCTTTCCTGGTCCACAGGGGCCTATAGGTCTACCAGGAGAGAAGGGCCCTGAGGGCAAACCTGGTATGCAGGGCCTTCCTGGGATTGATGGTCCTCCTGGTCATCCTGGAAGAGAGGGACCCCCTGGGGAGAAGGGACACCAGGGTTTATCAGGAGCACAAGGGCCGGTTGGATATCCTGGGCCTCGTGGAGTGAAGGGCGCAGATGGGGTGAGGGGACTGAAGGGTAGCAAGGGCGAGAAGGGTGAGGATGGTTTCCCTGGAGCCAAAGGTGAAATGGGCATCAAAGGAGACAGAGGTGATAATGGTTCTCCTGGAAGTCGTGGTGAAGATGGGCCAGAGGGACCAAAGGGTCAATCAGGACCTTTAGGAGAGCCTGGATCTGCAGGCATTGCTGGAGAAAAGGGGAAACTTGGTGTTCCAGGATTGCCTGGTTATCCCGGTAGGCAGGGCTCAAAGGGATCAGTGGGCTTTCCTGGAACAGCTGGTTTGGAAGGAGAGAAAGGAAAGAGGGGACCTGCTGGACAGGCTGGTGCAGATGGTGAAAGAGGTCCAAATGGTGCACGTGGGGGAAGAGGAGCACGAGGTCCAACAGGGAAGCCTGGAGCCAAGGGCTCTGCTGGTCATGACGGCCCACCAGGTGCCACAGGAGAGAGAGGCCCTCAAGGACCGCAAGGACGCAATGGAGAGGCTGGGCCAAAGGGACCAAATggCCCTCCTGGAAAAGATGGGTTGCCGGGTCACCCAGGTCAACGAGGAGAGCCAGGATTTCAAGGAAAGACTGGTCCCCCTGGGCCTGCAGGAGTGGTTGGACCACAGGGCAAAACTGGGGAGACTGGACCCACCGGTGACAGGGGCCACCCAGGTGCACCAGGACCTCCTGGAGAGCAAGGTCTGCCAGGAGCTGCAGGCAAAGAAGGGACCAAGGGAGATCCAGGCCCCGCAGGGCAGCCCGGGAAGAGTGGTCCTGCTGGGCGGCGTGGATTCAGAGGAGAAAGAGGCTTACCTGGCATTCTGGGCTCTTCTGGTTTGAAGGGTGGAGAGGGCCCACTTGGTGTTGCAGGGCCAATTGGTGCCACCGGAGAGAGAGGATCCTCTGGACCTGCAGGTGCCATTGGCCAACCTGGTCGTCAGGGGGGTGTCGGCCCTGCTGGGCCAATGGGAGAGAAGGGCGAACCAGGTGAAAAAGGTTCAATTGGCCCTGCAGGACGCGATGGAGAACAAGGGCCTGTGGGATTACCTGGACCTGCTGGGCCACCGGGCCCACCTGGAGACGATGGAGACAAGGGGGAGACAGGTGGACCAGGGCAGAAAGGCAGCAAAGGAGACAAAGGAGAAGGAGGTCCCCCCGGGCCACCTGGGAGCCAAGGACCTGCTGGACAGCCAGGACCACCAGGTCTGGATGGAGAGCCAGGGCTCCGGGGACAGCAAGGGATGTATGGCCCTAAAGGTGATGAAGGAGAACGAGGTTTTAAAGGGGCAACTGGACCACCAGGGTTGCAGGGAATGCCAGGACCCCCTGGAGAGAAGGGAGAAAGTGGCCATGTTGGATCTATGGGCCCTCCAGGACAACATGGTCCACGCGGTCCCCAGGGAGCCATTGGAGGAGAGGGTCCTCAGGGCATGCCGGGCGCAGTGGGCCAGCCAGGAGTGGTGGGAGAAAAGGGTGAGGATGGGGAAGCTGGGAATCCAGGAAATGTGGGAGAAACTGGCCTGGTTGGAGAAAAAGGTGAGGTGGGTGAGAAGGGGGATGCTGGCCCCCCTGGGGCTGCAGGACCCCCCGGAATCAGAGGCATACCTGGATCAGATGGACCCAAAGGAAACCCAGGGCCCCTTGGATTCCCTGGTGACTCTGGACCCTCTGGAGAGCCAGGTGTTAATGGCATAGATGGTGGACCTGGAGCTAAAGGGGATAATGGCGAACCTGGTAAATCTGGACCCCAAGGTGCCTCTGGAGAgcctggccctccaggacccccTGGACGAAGGGGTCATATAGGTCCTGAGGGAAAAGAAGGGAAGCAAGGAAAAAAGGGGGCAAAGGGCTCTGCTGGTGCTGAAGGTCCGATAGGAAAGACAGGGCCTGTTGGACCACAGGGACACCCAGGAAACCCTGGTCCAGAGGGTTTGCGTGGAATTCCAGGCTCTGCTGGGGAGCAGGGGTTAAATGGACCCCCTGGGCAAACGGGACCTCCAGGACCTATGGGACCAGCTGGATTACCAGGACTGAAAGGAGATCCAGGCATTAAAGGAGATAAGGGTCACGGTGGGCTTATTGGTCTAATTGGACCACCAGGAGAAATGGGAGAGAAAGGAGATCGGGGCCTGCCTGGGATTCAGGGAATACAAGGAACCAAAGGAGATGGTGGTGCTGGTGGCCCCCCTGGCCCTACTGGCCCTCCTGGACCCCCTGGGTTGTCTGGTGCAATAGGTGAGAAAGGATCTAAAGGGGACCAGGGAGCCATTGGTGCAAGAGGAGATACAGGACCTGCTGGGCCACCTGGACCACCTGGCCCTCCAGCCGCTATGATTGAGCCACTGCCAATCAGAGAGGGGCGCAAAAAGCGAAGGAGACACTCAAATCGACAAGGAGCCGAGTCCAGGGCAGAGGCTGAGGAAGAGGAAGCGGTTCAGCTCAACATGGAGGATTTCCTACAGGCAGATGAAGCTCTGGATGAGCCGGAAGGCATGGAGGAGGTGTTCGCTTCACTCAACTcaatgaaaacagaggtggagctCATGAGGAAACCTCTCGGGACCTTTGAGAGTCCTGCCCGCACATGCAAGGAGCTGATGTTGTGTCACCCCGATTATAAAGACGGTGAATATTGGATTGACCCAAACCAAGGCTGTCATCGAGACTCCATCAGGGTTTTCTGCAACTTCACGGCAGAGGGGGAGACCTGCCTGCACCCAGATAAACGATTTGAAACGGTGAAGCTGGCCGCCTGGAACAAAGAAAAACCGGGCAGTTGGTACAGCCAGTACAGAAAGGGCAAACAGTTCTCCTACATTGACACTGAGGGAAACCCAGTTCCTGTGGTTCAGATGACCTTCTTGAAGCTCCTCAGTGCCACAGCGATGCAGACGTTCACCTTTAGCTGCCAGAACTCCATCGGCTGGTACGATATGTCGAACCATAACCATCAACATGCCTTACGGTTTCGAGGTAGCAACGATGAGGAGATGACGCAAGACAAATCGCCCTTCATTACTGCGCTTTATGATGGATGTCAGACACGAAAGGGTCTAGATACAACCGTTCTCCAGATCAACTCTCCGCGATCAGAGCTCCTTCCACTCATCGATGTTGCCATTTCAGACTTTGGGAGTAACAACCAGAAGTTCGGATTTCATGTCGGAACAGTATGTTTTAGCGGCTAATACAGATCTGCCTCATTGCACTGCTTAccagctaaaaaaaaagaaagaaatcaagGCTGCAAGTGATATTTATTGAGTAATGTGTAAGCGGTGGCTTTGTGGCATGTTTTCAAATGACTCTTGAACATCTGATGGATTTCCAAATCCCTCAATTCCACGATGGCTACGCTAGGATGCCAACCGGGACCAACTGAGCACATTTATCAAAGGGAAGAgtctttttctgtctgtctttatacTCTACTCACCTGTGGATTAAATTATGAGGCGCGACCCACTAGATTTCCGAGAACTGCTCCGACTGAAAAACAAATGCATCACTTCTGTGTCATCCGCTCCGCAGGCTGCTTTAGCCCATCGCGCGCTATATTTTTGAACTTAAAGCCTGTTACTCAGTTCTCATTTGTTGTTTGTCTCATTTGATAGCGATGGTTCAAAATTAATTTGCCACATGAGGGATCGGCTTCGATGTTGAAGAGTCAATATTTCGCCGACCCGCGTTCCTGCCTTCACTGCAACGTGACGCCAACTGGGGCGAAGCTATACCTCTTTACTAGTTTTGACAAGGAAAACACCACCCCGATCTGCTTGTAATTCCTTGCTCGAATATCCCCTGTCACATCAAACTTGCAGTGTTACTCATCTTTAATCAGTGTACGCTCATACATAAACAATGTTAAATAAGGCCCGAGCTTTTCAAAACGCAAAGCAGTTTATGTGCATGACTCAAATGGAGCCCAGCTGCTTATTAATATGTAAAGTAGTGCGCTCACTTAAGCTGCTTGTCTTGTTAGCAGGCAGGCTAGTATGTTTGCCTGTCAGAGATCCATGTTTCTATGGTGCTTGCGTATCAACCTTTGCTCCACACAGCtgaattgctatatatatatatatatgtgtgcgtgtgtgtggtatTGAATGAGAATTCATCAAGAGAGGGGCGTCATAGCAGCATTACACTGAAGACGAACTAAATAATGCTTCTCTTTTTGGTGTAAACTCATTGAATTTAGGATCATCAACCTC

Function

symbol description
col5a3a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen fibril organization; notochord development; and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in eye; notochord; and pericardium. Orthologous to human COL5A3 (collagen type V alpha 3 chain).

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0030903 notochord development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-968 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen fibril organization; notochord development; and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in eye; notochord; and pericardium. Orthologous to human COL5A3 (collagen type V alpha 3 chain).

Ensembl:

ensembl_id ENSDARG00000098294

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050632 True 6759 mRNA 0.54 67 53773256 53919463

Neighbor

gene id symbol gene type direction distance location
XLOC_025761 NA coding upstream 120855 53526965 ~ 53652401 (+)
XLOC_025760 zmp:0000001048 coding upstream 251048 53511936 ~ 53522208 (+)
XLOC_025759 camsap3 coding upstream 323819 53352018 ~ 53449437 (+)
XLOC_025758 xab2 coding upstream 422709 53317040 ~ 53350547 (+)
XLOC_025757 stxbp2 coding upstream 498971 53240562 ~ 53274285 (+)
XLOC_025763 olfm2a coding downstream 93245 54012708 ~ 54238460 (+)
XLOC_025764 CU633748.1 coding downstream 148060 54067523 ~ 54067639 (+)
XLOC_025765 NA coding downstream 191926 54111389 ~ 54111972 (+)
XLOC_025766 NA coding downstream 351240 54270703 ~ 54271345 (+)
XLOC_025767 NA coding downstream 364304 54283767 ~ 54284185 (+)
XLOC_025429 BX649540.1 misc upstream 23524220 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 889832 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 944250 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 1153081 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 1381051 52390252 ~ 52392205 (+)
XLOC_025768 NA non-coding downstream 370215 54289678 ~ 54303624 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00907179_00957938 COL5A3B, COL5A3, COL5A3A coding CI01000113 null 906941 ~ 958094 (-)