XLOC_025763 (olfm2a)


Basic Information

Item Value
gene id XLOC_025763
gene name olfm2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54012708 ~ 54238460 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050633
AAGAAATTGATGGTCACTCTGTTTTGGCTTCATGTAGAGGCAGAAAACTTTCAGATGggcaaacatttatttaacactCCACTGATCTGGGATTTATGGCGAGTTGTCAAGTTTAACCCTCTCCTCAGTGAAAATACATGGAAATCTGGCAAAACTGGCAAAGAATACCACCAAAGAACTTTTAACATGTGAGATTCTGTGGTCTGTTCCAACTACTGTTCCACGTCCAGAGTAAACCAGCAGTTATTCATGACCTGCATAGTACATTATATCCCAAATATAAAGAATGGTGGTGGAGCAGCATGCAGGATTGAATGAAATCTGACCACAGCAAAAAACAAGCCCTGTATCCAAGCCCGGAGGAGGGCTGGCAGATCTACAGCTCGGCACAGGATGCAGATGGGAAATGTATCTGCACCGTTGTTGCTCCAGCACAGAACATGTGTAATCGAGACCCACGCAGCAGACAGCTCCGGCAACTTATGGAGAAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCTGAGGGAGGAAGTGAGAAATCTGTCTCTGGTACTTATGGCCATTCAAGAAGAGATGGGAGCCTATGATTACGAGGAGCTCAGGCAGCGAGTGCTATTACTAGAGACTCGCCTGCACTCCTGCATGCAGAAACTCGGTTGCGGAAAGCTAACTGGCGTCAGTAACCCCATCACCGTCCGTGCCTCAGGGTCAAGGTTCGGTTCCTGGATGACTGACACAATGATCCCCAGCTCTGATAATAGGGTGTGGTCAATGGATGGTTACTTTAAGGGACGTCGTGTGCTGGAGTACCGCACCATGAATGACTTCATGAAGGGCCAGAACTTTGTCCAGCATCTCCTGCCCCACCCTTGGGCTGGTACGGGTCACGTGGTCTACAACGGCTCACTATACTACAACAAATACCAGAGCAACATCCTCATCAAGTACCACTTCCGGTCTCGAAGTGTCCTGGTGCAGCGGAGCCTTAGCGGTGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGCGGATCATCCGACATCGACCTCATGGCTGATGAGAATGGTCTGTGGGCTGTCTACACCACCATTCCCAATGCCGGAAACATCGTCATTAGCCGTCTAGAGCCGCAAAGCCTGGAAGTGCTTCAAACGTGGGACACAGGCTTTCCCAAACGGAGCGCAGGCGAGTCCTTCATGATCTGCGGCACTCTTTATGTAACCAACTCCCACTTGGCCGGTGCTAAAATCTACTTCGCATATTACACCAACACCTCGACCTATGAGTACACTGACATCCCCTTCCATAACCAATACTCCCACATCTCCATGATGGACTACAATCCCCGAGAAAGAGTTCTCTACACCTGGAACAATGGACATCAAGTCCTCTACAACGTCACGTTGTTCCAGGTCATCAAAACCGCTGAGGACTAAGTCATTCagactttacaaacacatttgctcatacacaaatgcacacacactattataacacacacatacacacacttatgtGGAGGGGGGACTAAAGTTGAAACTTTTTTACTGCATTCCAAACTTCATAGAGTGCTATTAATTATCTAATGTTCTGAGGAGAGGAAGATTGGTACTGATAAATGGACGGAGCTTTTATTTTCTTTCCTGTGATGATTCAGCATGAgtactttctttttatttgtggaaaaagatgaataaataaacatcaaaCTTTACCATTTTTCAAGTTTCAActttttctttcctttgtttttttcttttctcctaGATGCTGATGGTTACTAATGGCTGCATACTGtagtagctaaaaaaaaaagaagcttttgTAAATGCCTGATCGctcattatttttaaagaaatctttaACAAAGCCTTCCTAACCTCCAGCTGTAATGAAAGTAGAGATGTGCCACAGCAGGATGAGCCGAGCCTCTCTTGACTGCCTCAGGAAGTGAATTCAGCTCCTGTTTGGTGTCAGCCATCCTGAGGAGAGACGTCAGTCAGGCAGAGCTCAGTGACATGAAGGGCTGAAAGGTGAGGTGGTggaggagaaaagaaaaaaaaattagagaCAGCGGAGGGATGAATAAAAAAGCAACAGCATTGAGTCGGACAGATGAGGCCCTGGGCTACGGTGatgcctgctgctgctgctgttgttgtttgcGCCTGCCAAGTTGCAATCTGTTCCCATCTTGTGATACGCAACTCCTCAACAGGCtgtgtataaaatattaaattagtgATGGCGGGCTTGTCCAGCTTCCTTTTACAATGTGGTTTTTACTTAATATGAGTCAAGTATAGTATccatatttggtttttggctttAGCAGAATTTTCATCATCAGTATGGTCTGCTGGTTTGGTGCAAAATATCTGCATAGGGCACTATTTTTGGACAAGTGTGCACTGGAAAAGAGAGACTGACTGCGGTCTTGGTAAATCTAACTGTACACATGTAAGGTACAGCATCCAGCATTTTAATGGAAAACTTTATCATAAAGGCCCGATCGCTCCAAGAAAATTAGCTGTAAAGatacattgattcattcattcattttcttgtcggattagtctttttattaatctggggtggccacagcggaatgaaccacc
>TCONS_00050634
CAATAACAGCCTCCTCGTTCACTGGGCAGCATCTTGAGCAGGGGGCATTTCTCTGAATGTTCTCCCGGAGCGTCAATGTGTGCTGCTCCTAGCGTCGGAGCTTCGCAAGCACATTAGTCACCTTCCAACCTCTCTGCAACTCTCCAGCTCAGCCAGTCGATCCCACTTCAAAAAGCCTGCTGAGAGGGGGAACTGCTAGACTTCATTTCCCGAGCCCGTTTACAACGCTGACCTCTTGGTGGCGGTCACAAGCGAAATACTAGGGGGACTAATCATAAAACACAAGGCGGCTCGTTGTGCCGTGGCACAGTGGGGGTAAATCTGCCTCCGTGAGCGGAATAAAGCCCAGCGCGTGCCGCCTGTGATGTGGATCGTCGCGCGCGCTCGACAGAACACTGACACAATCCTGCGCGGACCGTGAGGAAAGCAGGCGAGCTCCGAAAACGACAAGTGTCCAAGTGCTGGGGGTGCTCACAACGCTGTCATTTCGAGAGGAATGCATCTCTTCAGTGCCATGTTCCTGCTGCTGATGTTATCTATTATACCCTGCGAGGCCCTGTATCCAAGCCCGGAGGAGGGCTGGCAGATCTACAGCTCGGCACAGGATGCAGATGGGAAATGTATCTGCACCGTTGTTGCTCCAGCACAGAACATGTGTAATCGAGACCCACGCAGCAGACAGCTCCGGCAACTTATGGAGAAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCTGAGGGAGGAAGTGAGAAATCTGTCTCTGGTACTTATGGCCATTCAAGAAGAGATGGGAGCCTATGATTACGAGGAGCTCAGGCAGCGAGTGCTATTACTAGAGACTCGCCTGCACTCCTGCATGCAGAAACTCGGTTGCGGAAAGCTAACTGGCGTCAGTAACCCCATCACCGTCCGTGCCTCAGGGTCAAGGTTCGGTTCCTGGATGACTGACACAATGATCCCCAGCTCTGATAATAGGGTGTGGTCAATGGATGGTTACTTTAAGGGACGTCGTGTGCTGGAGTACCGCACCATGAATGACTTCATGAAGGGCCAGAACTTTGTCCAGCATCTCCTGCCCCACCCTTGGGCTGGTACGGGTCACGTGGTCTACAACGGCTCACTATACTACAACAAATACCAGAGCAACATCCTCATCAAGTACCACTTCCGGTCTCGAAGTGTCCTGGTGCAGCGGAGCCTTAGCGGTGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGCGGATCATCCGACATCGACCTCATGGCTGATGAGAATGGTCTGTGGGCTGTCTACACCACCATTCCCAATGCCGGAAACATCGTCATTAGCCGTCTAGAGCCGCAAAGCCTGGAAGTGCTTCAAACGTGGGACACAGGCTTTCCCAAACGGAGCGCAGGCGAGTCCTTCATGATCTGCGGCACTCTTTATGTAACCAACTCCCACTTGGCCGGTGCTAAAATCTACTTCGCATATTACACCAACACCTCGACCTATGAGTACACTGACATCCCCTTCCATAACCAATACTCCCACATCTCCATGATGGACTACAATCCCCGAGAAAGAGTTCTCTACACCTGGAACAATGGACATCAAGTCCTCTACAACGTCACGTTGTTCCAGGTCATCAAAACCGCTGAGGACTAAGTCATTCagactttacaaacacatttgctcatacacaaatgcacacacactattataacacacacatacacacacttatgtGGAGGGGGGACTAAAGTTGAAACTTTTTTACTGCATTCCAAACTTCATAGAGTGCTATTAATTATCTAATGTTCTGAGGAGAGGAAGATTGGTACTGATAAATGGACGGAGCTTTTATTTTCTTTCCTGTGATGATTCAGCATGAgtactttctttttatttgtggaaaaagatgaataaataaacatcaaaCTTTACCATTTTTCAAGTTTCAActttttctttcctttgtttttttcttttctcctaGATGCTGATGGTTACTAATGGCTGCATACTGtagtagctaaaaaaaaaagaagcttttgTAAATGCCTGATCGctcattatttttaaagaaatctttaACAAAGCCTTCCTAACCTCCAGCTGTAATGAAAGTAGAGATGTGCCACAGCAGGATGAGCCGAGCCTCTCTTGACTGCCTCAGGAAGTGAATTCAGCTCCTGTTTGGTGTCAGCCATCCTGAGGAGAGACGTCAGTCAGGCAGAGCTCAGTGACATGAAGGGCTGAAAGGTGAGGTGGTggaggagaaaagaaaaaaaaattagagaCAGCGGAGGGATGAATAAAAAAGCAACAGCATTGAGTCGGACAGATGAGGCCCTGGGCTACGGTGatgcctgctgctgctgctgttgttgtttgcGCCTGCCAAGTTGCAATCTGTTCCCATCTTGTGATACGCAACTCCTCAACAGGCtgtgtataaaatattaaattagtgATGGCGGGCTTGTCCAGCTTCCTTTTACAATGTGGTTTTTACTTAATATGAGTCAAGTATAGTATccatatttggtttttggctttAGCAGAATTTTCATCATCAGTATGGTCTGCTGGTTTGGTGCAAAATATCTGCATAGGGCACTATTTTTGGACAAGTGTGCACTGGAAAAGAGAGACTGACTGCGGTCTTGGTAAATCTAACTGTACACATGTAAGGTACAGCATCCAGCATTTTAATGGAAAACTTTATCATAAAGGCCCGATCGCTCCAAGAAAATTAGCTGTAAAGatacattgattcattcattcattttcttgtcggattagtctttttattaatctggggtggccacagcggaatgaaccacc
>TCONS_00050636
GCCTTGCTGTGATGCCGTCGGATCCGAGCAGCTGGTACGCGTGAGCTGCTTTTTGGGCTCGTGTGGTCACCCCGTTTCTTTGCTGGAGGAAGAGGGAGGAGGGCGCATCAGGTTTGTGTCCGTTCTCGCCTGCATCTGGACCCCGGCGCCAGGGAGCGTGGGGGGCATTAGGGCCAGGCGGCCAGTCGGGGGGACGACATGAGCGTTCCGCTCCTGAAGATTGGCGCGGTGCTCAGCACCATGGCCATGGTCACCAACTGGATGTCCCAGACCTTGCCCTCTCTAGTGGGGCTTAACGGAACCACCATCTCTCGTGCAGGCACCTCGGAAAGGATTGTCAGTGCCCTGTATCCAAGCCCGGAGGAGGGCTGGCAGATCTACAGCTCGGCACAGGATGCAGATGGGAAATGTATCTGCACCGTTGTTGCTCCAGCACAGAACATGTGTAATCGAGACCCACGCAGCAGACAGCTCCGGCAACTTATGGAGAAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCTGAGGGAGGAAGTGAGAAATCTGTCTCTGGTACTTATGGCCATTCAAGAAGAGATGGGAGCCTATGATTACGAGGAGCTCAGGCAGCGAGTGCTATTACTAGAGACTCGCCTGCACTCCTGCATGCAGAAACTCGGTTGCGGAAAGCTAACTGGCGTCAGTAACCCCATCACCGTCCGTGCCTCAGGGTCAAGGTTCGGTTCCTGGATGACTGACACAATGATCCCCAGCTCTGATAATAGGGTGTGGTCAATGGATGGTTACTTTAAGGGACGTCGTGTGCTGGAGTACCGCACCATGAATGACTTCATGAAGGGCCAGAACTTTGTCCAGCATCTCCTGCCCCACCCTTGGGCTGGTACGGGTCACGTGGTCTACAACGGCTCACTATACTACAACAAATACCAGAGCAACATCCTCATCAAGTACCACTTCCGGTCTCGAAGTGTCCTGGTGCAGCGGAGCCTTAGCGGTGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGCGGATCATCCGACATCGACCTCATGGCTGATGAGAATGGTCTGTGGGCTGTCTACACCACCATTCCCAATGCCGGAAACATCGTCATTAGCCGTCTAGAGCCGCAAAGCCTGGAAGTGCTTCAAACGTGGGACACAGGCTTTCCCAAACGGAGCGCAGGCGAGTCCTTCATGATCTGCGGCACTCTTTATGTAACCAACTCCCACTTGGCCGGTGCTAAAATCTACTTCGCATATTACACCAACACCTCGACCTATGAGTACACTGACATCCCCTTCCATAACCAATACTCCCACATCTCCATGATGGACTACAATCCCCGAGAAAGAGTTCTCTACACCTGGAACAATGGACATCAAGTCCTCTACAACGTCACGTTGTTCCAGGTCATCAAAACCGCTGAGGACTAAGTCATTCagactttacaaacacatttgctcatacacaaatgcacacacactattataacacacacatacacacacttatgtGGAGGGGGGACTAAAGTTGAAACTTTTTTACTGCATTCCAAACTTCATAGAGTGCTATTAATTATCTAATGTTCTGAGGAGAGGAAGATTGGTACTGATAAATGGACGGAGCTTTTATTTTCTTTCCTGTGATGATTCAGCATGAgtactttctttttatttgtggaaaaagatgaataaataaacatcaaaCTTTA
>TCONS_00050637
ACTTTTGGCTttgtgttttgtggtatttaacAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCT

Function

symbol description
olfm2a Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2882 Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).

Ensembl:

ensembl_id ENSDARG00000077847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050633 False 2831 mRNA 0.45 6 54012708 54238460
TCONS_00050634 False 3043 mRNA 0.48 6 54047342 54238460
TCONS_00050636 False 1928 mRNA 0.51 6 54168007 54237556
TCONS_00050637 True 275 lncRNA 0.48 2 54223325 54226528

Neighbor

gene id symbol gene type direction distance location
XLOC_025762 col5a3a coding upstream 93245 53773256 ~ 53919463 (+)
XLOC_025761 NA coding upstream 360307 53526965 ~ 53652401 (+)
XLOC_025760 zmp:0000001048 coding upstream 490500 53511936 ~ 53522208 (+)
XLOC_025759 camsap3 coding upstream 563271 53352018 ~ 53449437 (+)
XLOC_025758 xab2 coding upstream 662161 53317040 ~ 53350547 (+)
XLOC_025766 NA coding downstream 32243 54270703 ~ 54271345 (+)
XLOC_025767 NA coding downstream 45307 54283767 ~ 54284185 (+)
XLOC_025768 NA coding downstream 51218 54289678 ~ 54303624 (+)
XLOC_025769 NA coding downstream 94266 54332726 ~ 54336639 (+)
XLOC_025770 ppan coding downstream 315471 54553931 ~ 54567961 (+)
XLOC_025429 BX649540.1 misc upstream 23763672 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 1129284 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 1183702 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 1392533 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 1620503 52390252 ~ 52392205 (+)
XLOC_025776 NA non-coding downstream 596049 54834509 ~ 54836517 (+)

Expression


Co-expression Network