LOC110529699 (LOC106571484)


Basic Information

Item Value
gene id LOC110529699
gene name LOC106571484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26077497 ~ 26080970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612145.2
GACCAATGAGCGTGGTGCTGTCAGGGGTAACCACATCTGTCAACCGTTCTTGGCCAATAAAGAGCGGAGCGAGGCGGACCTCAGGTGCGCGCCTCTGCGTCCCCTTGGCACGGCGccagggagaacgagagagaatcCTAGCTGCCCCGTGGCGGAAAAGAGTAACTGTCAAAGGAAGCTTCTTTAACAAGAGAGCTATCACTTCGGCTCCGAGAGTTATGGCGACCGCAGCGTCCAACCACTACAGCGTCCTGACTACCCCCAGCAGCGCGCCGCCGCCGCACTCGGAGTCCGGGAGCATGCAGCAGGCAGCGGCGTACAGGGACGCGCACACCCTGCTCCAGAACGACTACACGCTACCCGGCAGCGGTCATCCCCTCAGCCACGCGCACCAGTGGATAACGGCTCTGTCGCACGGGGACGGGGCTCCGTGGCCGTCGAGTCCCCTCGGAGAGCAGGACGTGAAGCCAATTCTACAGAGCGACCGGGAGGAGCAGCAGAATTCCGCTAGTctacagcaacagcagcagcagcgacatCCTCACCTAGCGCACCAGGCGCATCACGACGCCAGGGCATGGCGAACGAGCACGGCCACCACGCACATCCCCGGTATGGCGACGTCTGACGGCCAGAGCCTGGTGTATTCCCAGTCTGGGTTCGGCCTGGGGGGAGCAGAGCAGATGCACCACCACTCCTTGCGGGACGAAGACCACCACAGCCACAGCCCGCACCTGAGCGAGCATGGAGGTGGGGGCCAGTCGTCTCTCTCGCACCACCAGCACGGGGGACACCCCGACCACTCGGACGAGGACACGCCAACTTCAGACGACCTGGAGCAGTTTGCCAAGCAGTTCAAGCAGCGGCGCATCAAACTGGGCTTTACCCAAGCTGACGTGGGGCTAGCGCTCGGGACCCTGTAtggaaatgtattttcccagACCACTATCTGCAGGTTCGAGGCGCTTCAACTAAGCTTCAAAAACATGTGTAAACTCAAACCACTGCTTAACAAGTGGCTGGAGGAGGCGGATTCCACCTCCGGGAGCCCCACCAGCCTAGATAAAATCGCGGcgcaggggaggaagaggaaaaagAGAACCTCCATCGAGGTGGGCGTCAAGGGGGCTTTGGagagccattttctcaaaagtccCAAACCCGGCGGCGCAGAGATCACCTCCATAGCGGACAGCCTGCAGCTGGAGAAAGAAGTTGTGAGGGTTTGGTTTTGTAACAGACggcagaaagagaagaggatgACGCCCATTGGAGGACAGTTACCTGGAACTGAGGACATGTATGGGGACACACCACCTCACCACGGCGCTCAAACCCCTGTACAATGATCTGAAAGCCGTTATAGTAAACACACGGATCCCTAAAGGATATGAATGACCTTTATGTTTCTCTGCCGGGCCAGTTAGCATTGGACTGTCGCCAGTGCTAATTTTGGACCTATGGAACACAGTGGGAATACCGAGTGTTGGAACTAAAGCACTACACCCCAGACACAGCAAGAGCTATGTGGAGTTTTCATGCAGTGGAGATGCTACGCGCAATAACGGCTACATGGACcgtgtttggtgtgtgtgctaACCAAAAAAAAGGTTCAATATCATTGACATCAAATCGATGTTATGGCCAAGACGTGTAAAAAAGAAAGACAGTATAGGCTGTGTGCACGAGCCTACCCGCGGGAAACAGGCATACAAGTTGCAACCGACAGTCGGTAAATAAACGCCATCTTTCAGTCATAACAAAAGCAACAGGGGTTTAACACGGTCGAAGCTCAATACACCTGCTGAACCATTTAATACTAGCCAGTGTCATCACCAGCGTAATATTATTTAACCTATTTGTATTGTTATTatcaatgtattattattattattatgtttctACCACAAAGGCAAAGCATATACCATGGTTATACGGTGTATTTCCAGAGTCATAAGGCATGCATACATGGGAGAAGGGACATGGGATATATTGAGATGTATTTTGAGATGTATTTAATCAATAAATCAATATGATCAATATTTAATCAAGTTAATTTTAAtcaaacatttgtcataattagtttcAGTTTGACTAACTAGCCTATATTTGAATTGCAGTTGGTTAATGACCATCAAAATAGTAAACACAGTAGATAATACACTGTCAACAACATATTTACCAAGGGACAATATCTCAGTTATATATGTGGTCAGATTGTATCCAAATAATCTAAACCTATTTTCTTCATAAAAATTCAACTGTCATATAATAGGCctaaataataatcataataacaataacaataataatacagtaataataattGTGGCTTGTGTATGCCTTGGCAAGGCACACACCACGGGGTCAAAATAACCATGAAAATGAATTCATTGTATTTTCCCTTGACACTTCGTGACGTGTCCATCATCGTGTACATTTGACCGTTCTGCGCGACTTTTTACAGTAGGCTATGTGTTGTATTAGTACATTTATTTATGTGTTTCCAAAATGCTGTGACCAGAAAGACCGAGACTGTAAAGACCCATACCATATCACTGAAGCCTGCCATTTGCCTTCGTTTCGTAAGAAGAAAATAACGGAATATATATGTACCAGCTCTGTCTTCAGTGGCTCTAATTAATCTATACAATGATTAATTCACTAAGAAGAATTATTCGTGGGATGTAACTTTATTTGTTTTTGTATGgctttgtatgtttgtttgtttgttgaatTTCCTCTTGTAGACCAGTGCCAAAGCACAAACACGTGCACTTGCTCTTGTGCCACTCAACTTGTGATATGTAGGCTCTCTGACAGCATGCAGGGTCGGGGTCAACTTTGGCAATTCCTGGACTAAATTCAAAACCAATGACAATAGTCCAAATGTGTAAGCTATTTCTAGAACTTGGATTTGAATTTGAATGGTGTCAGGAGGAGGCTGATTCGGGATTTGAAATTGAAAGACAGAAAATGGAATTAAATTAATGGGAAATTCTCCACATAGGCTACTGAcaaaaaatggattacattggtATAGCAaatctataccccccccccccccccccccccacacacacacacacacacaccagtcaaaCTAGTCTAATATTTCACTGATAATTACATAATAAAATGTAACATAGGCTTATTTTATGACACAAGTAGGCCTTGAATTAGTGAAAAGGCTCCCTAGGAAAATACAAATTGAGTAGGCCCACACattcaatacaaagaatttgTGGAATTCAATTTAATTAAATTGTATTTCCTGTCATTCACattcaaatgtaaatatattttcttGACAATTCAAATTCAACTCAAAAGGTTGGATTGGATGTGAGTTCATACGTATTCTGAATTGACCCCGATCCTGTGACTGATCAAAAGAAggggaaaataaaataaaaattgcacAATTTCTATATTATGCTTTTTGtcattaaaatgtatttgttttttataATC

Function

NR:

description
POU domain, class 3, transcription factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612145.2 True 3474 mRNA 0.46 1 26077497 26080970

Neighbor

gene id symbol gene type direction distance location
LOC110529698 LOC106571483 coding upstream 70868 26003595 ~ 26006629 (+)
LOC110529695 nagab coding upstream 267590 25805901 ~ 25809907 (+)
LOC110529691 LOC106571477 coding upstream 343697 25693543 ~ 25733800 (+)
LOC110529690 LOC106571476 coding upstream 391620 25678604 ~ 25685894 (+)
LOC110529689 LOC106571475 coding upstream 401410 25653300 ~ 25676087 (+)
ngs LOC106571488 coding downstream 34036 26115006 ~ 26118968 (+)
LOC110529702 LOC106607944 coding downstream 52227 26133191 ~ 26195544 (+)
LOC110529705 LOC106571492 coding downstream 185289 26266259 ~ 26271258 (+)
LOC110529707 LOC106571493 coding downstream 282207 26363177 ~ 26376176 (+)
LOC110529706 LOC106571495 coding downstream 300127 26381097 ~ 26393547 (+)
G690148 NA non-coding upstream 10575 26066607 ~ 26066922 (+)
G690131 NA non-coding upstream 34540 26042719 ~ 26042957 (+)
G690127 NA non-coding upstream 38392 26038839 ~ 26039105 (+)
G690122 NA non-coding upstream 46853 26030442 ~ 26030644 (+)
G690113 NA non-coding upstream 55103 26022152 ~ 26022394 (+)
G690135 NA non-coding downstream 2771 26083741 ~ 26087595 (+)
G690188 NA non-coding downstream 68003 26148973 ~ 26149701 (+)
G690333 NA non-coding downstream 161389 26242359 ~ 26242656 (+)
G690304 NA non-coding downstream 167113 26248083 ~ 26250529 (+)
G690307 NA non-coding downstream 169647 26250617 ~ 26252930 (+)
G688823 NA other upstream 1016047 25058953 ~ 25061450 (+)
G688613 NA other upstream 1092671 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 2086498 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 2553462 23484408 ~ 23524035 (+)
jag2b LOC106571712 other downstream 1475314 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1814731 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1889506 27951635 ~ 27972016 (+)

Expression


Co-expression Network