LOC110529220 (LOC106571486)


Basic Information

Item Value
gene id LOC110529220
gene name LOC106571486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26087446 ~ 26094609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985177.1
TACCCTACATTCTAGTGTTGCCTGGATTTAATTTTGTAATGGTCTAAAAGTTTCTAGAACTACTGATCATCTTGCAACAAATAAAAGTCATAGGCTACACCACCATACAATAGTTAGGCCTATATGACTTTAGTAGAGTAGCCTATGCTATTGCCATTGAGTAGCCTATGCTATTGCCCAACTGATCGCAAAAACAGAGTTTCAAAGGTACAGCTATCGTGACGTCACTTATCCGCGGCAGAGTGAGAGAGCGGCGACGATCGGCTGCGGAGGATACCGACCCCGCAGCGGGGACGGGACAACCGCCAGGCGAGATGGCCCCTATCCCTTTCTTCCTTGCATCCCGCATCGCAACGACCCCTTTGCACGCATGAAGCCCCCGTTGATGAAGCCAAAACCGGCCAAAGCAAGGCAGAAAAAGGccactgagagagagaatgtactGGCGCGTCGGGTTCGCCTGGACGCGCTCGTTTGTGGTTGATCTTGGACGGAACCAGAACTTCTCCTTCGGCTTGTGCGGCTCCAATGAGCAGCTCTCGTTGTATGGGTACATCATCGCCTACCCTCTGCAGGACTACGGCGGGATCATGCCGCTCCTTGGGTCGGACTCGTGGTGGCGGAAAACGCTCTATCTGACCGGGGGCGCTCTGCTTGCCGCCGCTGCCTATCTACTGCACGAGCTGCTCGCCATCAGGAAAGAACAGGAGCTGAACTCTAAAGATACCATCATCCTCCACCAGTTCTCCAGGCCAAAGAGTGgtgtcccatctctctcccccttctgccTCAAGTTAGAGACCTACCTGCGCATGGTGGACCTGCcctaccagAACTACTTTGATGGGAAGCTGTCTCCCCAGGGGAAGATGCCATGGATAGAGTACAACCAGGAGCAGGTGTCTGGTACAGAGTTTATCATCGACTTCCTGGAGGAGAAGCTGGGCGTGAGCCTCAACAAGAACCTCAGTCCCCCGGAGAAGGCTGTGTCCCAGGCTGTCACCAAGATGGTGGAGGAACACTTCTACTGGACCATAGCGTACTGTCAGTGGGTGGACAACCTGGAGGAGACCCAGAAGATGCTGGCAGTGAGTGGGCCACTGAGTGACCTACTCAAGTGGATCCTGAGTCGCCTGACTGGCAGCATCGTGAAGAGGGAGATGTACGGCCACGGGATTGGACGATTCACCAGGGAGGAGGTCTACGCTCTAATGGAGAAGGACATGCGGACGCTGGCCACCCTACTCGGTGATAAGAAGTACCTGATGGGTCCTAAGCTGTCTATggtggatgccactgtgttcagCCATCTAGCCCCTGCCATGTGGACCCTGCCGGGCACAAGGCCAGAGCAACTCATCAAAGGCGAGCTGATTAACCTGGCCATTTACTGTGAGAGGATCCGCCGGCGCTTCTGGCCCGAGTGGTTCGTTGATCTGGAGGATTTCTGTTACGATGACACCACAGAGGACGACGACTCCCCGTCCAAACTCCAGGACCTGGGGCTCTACTCCCGTACAGACACCTTCCAGGACGAGGCCAgccctcctcacacacacacaatctcaccaGACAGTGACCTCACGGGCCACTCGCTCTGCGACTCGGACATGGACACAGAGTGCTCTGAGATGGAGCAGCTCAAGTGTTGACTGCCCTAtgacacacacaagacacacacacaccgcctggATGGGTCTCgtgccccctccccccccccccccctccccctccccccaaacaCAATGCCCTGTACCTGTTGAGCAGGGAATAACTACTGGGGTGCATTTCTGTTGCCAGAGGCTGTTGTTTGTGTTAATGAGTGATGGATTCAGAGATTCTACACACACAATGGACTGCAGGAATTGAAAGACTGAATAGAGATAGAGAAgtaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985177.1 True 1896 mRNA 0.55 6 26087446 26094609

Neighbor

gene id symbol gene type direction distance location
LOC110529219 NA coding downstream 69664 26006882 ~ 26017782 (-)
LOC110529697 NA coding downstream 88761 25992424 ~ 25998685 (-)
LOC110529696 LOC106571482 coding downstream 213769 25854580 ~ 25873677 (-)
LOC110529694 LOC106571481 coding downstream 281876 25801320 ~ 25805570 (-)
LOC110529218 NA coding downstream 287052 25796900 ~ 25800394 (-)
LOC110529700 LOC106571487 coding upstream 332 26094941 ~ 26106801 (-)
LOC110531082 pgm3 coding upstream 25856 26120465 ~ 26122280 (-)
LOC110529703 LOC106571490 coding upstream 77837 26172446 ~ 26175639 (-)
LOC110529708 LOC106571496 coding upstream 327886 26422495 ~ 26426074 (-)
cenpw LOC106571497 coding upstream 334431 26428702 ~ 26430888 (-)
G690237 NA non-coding downstream 14304 26072870 ~ 26073142 (-)
G690231 NA non-coding downstream 24345 26062874 ~ 26063101 (-)
G690219 NA non-coding downstream 51673 26035519 ~ 26035773 (-)
G690115 NA non-coding downstream 64662 26022582 ~ 26022784 (-)
G690112 NA non-coding downstream 67198 26020049 ~ 26020248 (-)
G690280 NA non-coding upstream 68005 26162614 ~ 26166381 (-)
G690691 NA non-coding upstream 145153 26239762 ~ 26240225 (-)
G690692 NA non-coding upstream 146022 26240631 ~ 26240834 (-)
G690693 NA non-coding upstream 147314 26241923 ~ 26242172 (-)
G690697 NA non-coding upstream 149901 26244510 ~ 26244983 (-)
G690073 NA other downstream 96303 25990678 ~ 25991143 (-)
G690033 NA other downstream 121953 25965179 ~ 25965493 (-)
G689810 LOC106571475 other downstream 422781 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 566158 25517566 ~ 25521288 (-)
G691447 LOC106571509 other upstream 769601 26864210 ~ 26868078 (-)
G691747 NA other upstream 1220959 27315568 ~ 27315935 (-)
G692859 NA other upstream 2021127 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 2384208 28478817 ~ 28481944 (-)

Expression


Co-expression Network