LOC110529700 (LOC106571487)


Basic Information

Item Value
gene id LOC110529700
gene name LOC106571487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26094941 ~ 26106801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612146.2
CAACCCAGACCCAGCTAAGTGGAACCCAAGCACATCACGCCCCAGTCGCCGTCAGAACAGCATTGAGTGTTACACTGCAAATTTATTAGCTGACCACTTTCTTCTCTATGTCCCGCATCATCTTTCAAAATAAAGaacatttaaaataacattttctACCTCAACTCATAAGCCATGGCTGGGAACTTCTGGCAGAGCTCGCATTATCTGCAGTGGGTCCTGGACAAGCAGGACCTGATGAAGGAGCGTCAGAAGGACATCAAGTTCATGTCTGAGGAAGACTACTGGAAACTGCAGATCTTCTTTGCCAATGTGATCCAGGCACTGGGGGAACACCTGAAGCTCCGCCAGCAGGTCATTGCTACAGCAACCGTCTACTTCAAACGTTTCTATGCCAGGTACTCCCTGAAGAGTATAGACCCAGTGCTCATGGCTCCTACATGTGTGTTCCTTGCCTCCAAAGTGGAGGAATTCGGTGTTGTTTCAAACACTCGTCTGATCTCTGCAGCTACGTCTGTGTTAAAAACAAGATTTTCCTATGCCTTCCCAAAGGAGTTCCCTTACAGAATGAACCATGTATTAGAATGTGAGTTCTACCTACTAGAGCTCATGGACTGCTGTTTGATAGTATATCACCCCTACAGACCCCTGCTGCAGTATGTGCAGGACATGGGGCAGGAGGACATGCTACTGCCATTGGCCtgGAGAGTAGTGAATGACACGTATAGGACAGACCTCTGTTTGCTCTACCCTCCCTTCATGATCGCACTAGCATGTCTGCATGTTGCCTGTGTGGTGCAGCAGAAAGACGCCAGGCAGTGGTTTGCTGAGCTCTCTGTCGACATGGAGAAGATCCTGGAGATCATCCGAGTCATCCTGAAGCTGTACGACCAGTGGAAGAATTTTGACGACAGGAAGGAAATGGCTGCAGTGCTCAACAAGATGCCTAAACCCAAGCCGCCTCCCAACAGTGAGAATGACCAGAGCTCCAGTGGAAACCAGAATAACTCTTACATCCAGTCATAGGCAATGGGACGTCCACCTCGGCTCATGTATGATAACTCATCAGATGGCCACAGGAATGCTGGCATTAGCCAATTGGCGGCAGCAGTCCTGTGTTTCCATCCCTCAACAGTTAAAGGGCGCGTTCCTGTGCCCAGGTGTTGCTAACGCATGGCAGATCTTAAAacacctggataggtattttatgtatcagctaaccacatgtTATAGCAATATAGTGCCCAATCGGCACAGTCGATGactgcaaccattggttgatgcattcaacgtctgagcaggggaacgcgACCAAAACCTTATGGACCCAACTGTGAGAAACAGGAGGATGTagtgagggagggggggactATGAGTTGTGATGATCCTGACTTCCTTGAAACACTCTCGGGGAACAATCATATAATATGGAGCTCCGTGGGGCCAGAGAACTTGATCATTAGTGATTGTGATGTGTGAGTTGCCCATTTGGCAGTGTCTTCATTCCTCAGGGAGAATAGTAGTCCTTTTTACTGGTATCGCTAAGATGACTGGACCCTGTACTGTTTGAGATGCGTTCTGAAAGGATGTAAGTCTGTTCGATTGTGTGACCCGATTGGATGTCCTGTTATCTAAGATCTACGTTGATTGGTTACAGAGCTTAGCAGGTGAAGTCATGGGGGAGAATGGAATTTCTGGGGGTATACCCGCTAGATTCAAGTGTCTTCATTACCTGTTACATCTCCAGCCTTTGTAAATAGCTTTACTCATGTCTTTCATTTCATTGTTTGTGTTTTACTTGATTGGGCAAATTTGCTTGGGTAGAAATCATGAAATGTATTTGCTGTCTGCTTTAAGTAAAACTGCTCAAATGTGTTTACTATCATGATGTAATTAGCCTGCAACAAAaacgttttattttttattctgctTTTTTTATGTGGAGAATTGTTAGGACCACATTTTTGGTGGGGAAGGCAGGTGGATATTTAGCTGTGTGTTCTTGATTGCATATTGAATCAGTCCTACACAAGCCAGGGTCCAATGTTTTCTGTCTGCATGTACCACATATTTAATCAAATTGAAGTGTCACAATACGTTTGTGTGCATATTTACTTGTagatattgatatattttctgtacagtaatacagtgggagttgtgtgtgtgagaggttgtTTCTCTTGGTTTCTCTGATATGTACGTGTTCATCTGTGTCCAGAACTGGGTGCTTGAATTCCTTACAAAATAAGCTGTTTATCAAGGTAATAAGACTTACGAGCACACTGTCCTATTGCAGGGAagttatgttttttgtttgtttttaggggGGTGTATATATTAGTGGTCCCTTTGGGTGCATCCCAATAGTCCGAAGTGAATTCCTCTCCTTGTTATCGGTTGCTTCATATACACTGATGCGAAGTAAATCTAGATGAAATCAGGCTGTTGGTGGTTGTGCTCCATATTACTTTCACATACCGGCTGTTTGCAAGTCATGAAAGATAAAGGAGAGCGAGGATCCAGCttttagactattgagatacaGCCTTTTGCCCCCTTTACAGGCTCCATCATGTATCATATGTGTTTACTTGACTGACTGGGATTAGCCTACTAAGGTTTTCCCCCTGTCTctatagaaacacaacatgaatGTGTGGTTTATAAAGTATTGGCTATTACTTGAACTGTATTTCTTTTTGAAAATCTATTGTGGTAATAAAATGAATATTGCAGTAACCAAATGGGTTGATGCAGCTATAGCTC

Function

NR:

description
cyclin-C-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15161 CCNC, SSN8; cyclin-C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612146.2 True 2769 mRNA 0.44 12 26094941 26106801

Neighbor

gene id symbol gene type direction distance location
LOC110529220 LOC106571486 coding downstream 332 26087446 ~ 26094609 (-)
LOC110529219 NA coding downstream 77159 26006882 ~ 26017782 (-)
LOC110529697 NA coding downstream 96256 25992424 ~ 25998685 (-)
LOC110529696 LOC106571482 coding downstream 221264 25854580 ~ 25873677 (-)
LOC110529694 LOC106571481 coding downstream 289371 25801320 ~ 25805570 (-)
LOC110531082 pgm3 coding upstream 13664 26120465 ~ 26122280 (-)
LOC110529703 LOC106571490 coding upstream 65645 26172446 ~ 26175639 (-)
LOC110529708 LOC106571496 coding upstream 315694 26422495 ~ 26426074 (-)
cenpw LOC106571497 coding upstream 322239 26428702 ~ 26430888 (-)
LOC110529710 LOC106571501 coding upstream 337316 26444117 ~ 26463361 (-)
G690237 NA non-coding downstream 21799 26072870 ~ 26073142 (-)
G690231 NA non-coding downstream 31840 26062874 ~ 26063101 (-)
G690219 NA non-coding downstream 59168 26035519 ~ 26035773 (-)
G690115 NA non-coding downstream 72157 26022582 ~ 26022784 (-)
G690112 NA non-coding downstream 74693 26020049 ~ 26020248 (-)
G690280 NA non-coding upstream 55813 26162614 ~ 26166381 (-)
G690691 NA non-coding upstream 132961 26239762 ~ 26240225 (-)
G690692 NA non-coding upstream 133830 26240631 ~ 26240834 (-)
G690693 NA non-coding upstream 135122 26241923 ~ 26242172 (-)
G690697 NA non-coding upstream 137709 26244510 ~ 26244983 (-)
G690073 NA other downstream 103798 25990678 ~ 25991143 (-)
G690033 NA other downstream 129448 25965179 ~ 25965493 (-)
G689810 LOC106571475 other downstream 430276 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 573653 25517566 ~ 25521288 (-)
G691447 LOC106571509 other upstream 757409 26864210 ~ 26868078 (-)
G691747 NA other upstream 1208767 27315568 ~ 27315935 (-)
G692859 NA other upstream 2008935 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 2372016 28478817 ~ 28481944 (-)

Expression


Co-expression Network