ngs (LOC106571488)


Basic Information

Item Value
gene id ngs
gene name LOC106571488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26115006 ~ 26118968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612148.2
CTGTCCCATTCCAACGAAGTGTGAACAGTTTCCAGTATCGAGTGAAGGTAAAGACAAGTTACAGGCCGTCATCATGAGTCGCAGCCCAGAAAGGATGTCTTCTTACCGCCGTCACTTCGAGGGCGCCCTTGCCTCCTCCTCTGCTTCCTACCAGGTGCGGGTTTCGAGCCCTTCACCGACCCGAAAGGATGTACGTCACCGTTCTGCCAGCTACAGTCACAACGGTGGAACCATGGGGAGGAGGAACCCCTCCAGCAGCCGCAAATCACATATGACCAGCAGTGTGAGTATGGGGGCCCTGTGCTTCGGAATAAACATGGGCCTGGGGCCCAGCCTGGACCTGGATGCAGCTGCAGCGGAGAACCAAGAATTCATGAGCACCCGCACCGGTGAGAGGCAGGAGATGGTGGCCCTCAACGACCGCCTGGCTATCTACATCGAGAAGGTGCGTACTCTGGAGGGGCAGAACAAGCTGCTGGAGGCTGAGATTGATGCTCTGAAGAACCGCTATATGAAGCCGTCTGGGCTGAGACAGCTCTACGAGGGACAGCTGAGAGAGCTCCACCGGATCGCGGAGCAGATGAGAGTACAGAGGGACCTGGCTGTAGCGGCCAAGGGGGCCATGGCAGGACAGGTGGAGGTGCTCAAGGTCAAATATGAGGAGGCTCTGGAGGCCAGGAAGAATGCAGAGTTGGAGATCGAAGCCTTCCGCCCCGATGTGGATAGAGCCACCTCGGCCCGTATCGGCCTGGAGAAACAGCTGGAGAACCTGGAGGTGGAGCTGGCCTTCCTGACCAGAGTTCACAAAGAGGAAATTGAGGAACTGATGCAGCAGATCTATGTGGCGGTGGCGAAGGTGGACATGACCTTTGCCCTTCCTGACCTCTCCCCCGCCCTCAAACAAATCCAGTCCCAGTACGACAGCATCGCTGCCAGAAACCTACAGGAGATGGACGCTTGGTACAAGTCAAAGTTCCAGGACCTGAACAATGTGACAACCAAACACGTTCAAAGCGTTCGAAGTGTGAGGGAGGAAATCGCAAGTTACAAGAAAGATAGCTTAAACCTGGAGCGTGAGTTGGAGTCTATGAAAACGAGAAATGAGTCTCTGGAGGTTCAGATTCGTGATGCTGTGGCGAGACACAAGAAAGAAGAGGAGACACTGCGTGAGCGTATTGAGGGGCTGAAGATGGAGCTGATGGTGATGAAGGAGAAGATAGCTCTGCTGCTGAGAGAGTACCAGGAGCTGCTCAACGTCAAGATGGCCCTGGAGATTGAGATCACCACCTACAGGGCGCTGATTGAAGGCGAGGACACCCGTCTCAGCACCATGGTACAGAGCATGTCCctgggtggaggaagaggaggtgtggcCATCAGCGCTAGCTCCACCTCTGCCTCGGTTAGTGCCGCCTCTGTCAGCGGATACAGAGCCTCTGGTATTGGATACGAAGGCACCAAAGAGGCCCCTGGCGGGGCGGTGATATTACCAGAGAGCCAGACGGAGAGCTTCGAGGAACAGTCAGTGGAGATGACTGAGCGGAAGACTCTTCTCATCAGAACAGTTAAGACAGATGACATGTATGAGAGCGACACACAGTAATGGTAATGCACCATTACCATCTCTGGAGCTGCTGACGACACAGACGAGGACTAGAGATGGAAGTCCATGCTCCTAACTCCTACACCACCGAATGAATGTTAGACCCCTTGAGACCTAAGCCCCAGCCCTTCCACCCTTGCCCCCAAAAATGTAACCCACACCAACCCCCTAGGATAGTGGTCTTCAGAATCCCTATGGTCctcttctctgtgtctctgcctacaCTAAACTCCCTCTTAGCCTCACATTGCCTTTCTGTTAGCCTTtaactccctgtgtgtgtgtgtgtgtctgagaacCATATCGCTCTACAagcaacaaataaaataaaaaacagcaaAGCAATTATAGTA

Function

NR:

description
glial fibrillary acidic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612148.2 True 1956 mRNA 0.54 11 26115006 26118968

Neighbor

gene id symbol gene type direction distance location
LOC110529699 LOC106571484 coding upstream 34036 26077497 ~ 26080970 (+)
LOC110529698 LOC106571483 coding upstream 108377 26003595 ~ 26006629 (+)
LOC110529695 nagab coding upstream 305099 25805901 ~ 25809907 (+)
LOC110529691 LOC106571477 coding upstream 381206 25693543 ~ 25733800 (+)
LOC110529690 LOC106571476 coding upstream 429129 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 coding downstream 14229 26133191 ~ 26195544 (+)
LOC110529705 LOC106571492 coding downstream 147291 26266259 ~ 26271258 (+)
LOC110529707 LOC106571493 coding downstream 244209 26363177 ~ 26376176 (+)
LOC110529706 LOC106571495 coding downstream 262129 26381097 ~ 26393547 (+)
LOC110529712 LOC106571498 coding downstream 347210 26466178 ~ 26590958 (+)
G690135 NA non-coding upstream 27411 26083741 ~ 26087595 (+)
G690148 NA non-coding upstream 48084 26066607 ~ 26066922 (+)
G690131 NA non-coding upstream 72049 26042719 ~ 26042957 (+)
G690127 NA non-coding upstream 75901 26038839 ~ 26039105 (+)
G690122 NA non-coding upstream 84362 26030442 ~ 26030644 (+)
G690188 NA non-coding downstream 30005 26148973 ~ 26149701 (+)
G690333 NA non-coding downstream 123391 26242359 ~ 26242656 (+)
G690304 NA non-coding downstream 129115 26248083 ~ 26250529 (+)
G690307 NA non-coding downstream 131649 26250617 ~ 26252930 (+)
G690309 NA non-coding downstream 140613 26259581 ~ 26260475 (+)
G688823 NA other upstream 1053556 25058953 ~ 25061450 (+)
G688613 NA other upstream 1130180 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 2124007 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 2590971 23484408 ~ 23524035 (+)
jag2b LOC106571712 other downstream 1437316 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1776733 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1851508 27951635 ~ 27972016 (+)

Expression


Co-expression Network