LOC110531082 (pgm3)


Basic Information

Item Value
gene id LOC110531082
gene name pgm3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26120465 ~ 26122280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986843.1
tttGCGCAGGCTGGTCTTGACCTACAAATAGCCGTGGTACAGACGGCATACGCTAACGGCATCTCTACACGCTACCTGGAAGACACCATGAAGgtgatAGTGCGGTGTACCAAGACCGGAGTGAAACACCTTCACCATGCAGCCCAGGAGTTTGACATTGGTGTTTACTTCGAGGCCAACGCCCACGGGACTGTCTTATTCAGTAAAGAAGCAGAAGAGAATATCCAGCAGCTAGCCCGGGACTCCAACACCAACGACGAGAGGGAAAACGCTGCACTGCTACTGCAGAACACGGTCAACCTCCTCAACCAGACCGTAGGAGATGCTATCTCTGACATGCTACTGATTGAGGCGGTGTTAACCATCAGAGGGATGACCGTACAACAATGGGACGCCATCTACACAGACCTGCCCAACAGACAGCTCAAAGtcaagGTGGCAGACCGGCGTGTGATTGACACTACAGATGCAGAGAGGAGAACAGTGAGTCCAGCAGGTCTGCAGGAGGCCATAGACAGCCTGGTGCATAAGCACAGACAGGCACGCTCCTTTGTCCGCCCCTCAGGTACTGAGGATGTGGTCCGAGTGTACGCCGAGGCAGACACACAGGTGGGACTTAGACGCTGACACTCAAACCTACTTGAACAGAAAAAAACACTGAGCGATAGGGATTCACTCAATTCACATTTCTTTGTTCACTCACTATGCCTTTACCTTTCTTTACTCTTTATTtttctgttctctcactgtctgaGGGTGATGTGTGTTTCAGGAGAGTGCTGATGCCCTGGCACATGAAGTTAGCCTGGCAGTGTACCGCATCgtaggaggagtgggagaggagccCAAACCTTTATAAACAGGCATTATGCAATGTCTGTCGAACACATTTTTTTAATCGTGCATCTAATGACAACTTCCTCAACCCATGATTCTACGTCAAATTTGTAGTCTTTATCAGGTGCCAAATCATTTTATAATGTGCACTGCATTTAATACTGTGTTATCACTTTTCTACGAGTCTGAACAATTTGATTTGTCAATGTGAATGAAAGGGAATCACTGTATTGGACAATGAAGGGAAAATATGCTAAATAAGGTTAGACTTGTAATCctcttcttttttttacccaACCTTAATCCTCTGTCAATGTAGTGGTACATGTTTACATTAGCAGTTATTGTAGATCAATTTTGTATTACTGTTTTATAGTGGAGTAATTGCACTGCTTTGAACGGACCTCAACTACAAAGACTGCTGCTATGACtgtcggcgttactctggaccctgatctctcttttgaagaacatatcaagagctttttccatctacgtaacattgcaaaaatcagaaactttctgtccaaacatG

Function

symbol description
pgm3 Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process and hemopoiesis. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in blood; intermediate cell mass of mesoderm; and notochord. Human ortholog(s) of this gene implicated in immunodeficiency 23 and teratoma. Orthologous to human PGM3 (phosphoglucomutase 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986843.1 True 1372 mRNA 0.45 5 26120465 26122280

Neighbor

gene id symbol gene type direction distance location
LOC110529700 LOC106571487 coding downstream 13664 26094941 ~ 26106801 (-)
LOC110529220 LOC106571486 coding downstream 25856 26087446 ~ 26094609 (-)
LOC110529219 NA coding downstream 102683 26006882 ~ 26017782 (-)
LOC110529697 NA coding downstream 121780 25992424 ~ 25998685 (-)
LOC110529696 LOC106571482 coding downstream 246788 25854580 ~ 25873677 (-)
LOC110529703 LOC106571490 coding upstream 50166 26172446 ~ 26175639 (-)
LOC110529708 LOC106571496 coding upstream 300215 26422495 ~ 26426074 (-)
cenpw LOC106571497 coding upstream 306760 26428702 ~ 26430888 (-)
LOC110529710 LOC106571501 coding upstream 321837 26444117 ~ 26463361 (-)
LOC110529713 l3hypdh coding upstream 469250 26591530 ~ 26596738 (-)
G690237 NA non-coding downstream 47323 26072870 ~ 26073142 (-)
G690231 NA non-coding downstream 57364 26062874 ~ 26063101 (-)
G690219 NA non-coding downstream 84692 26035519 ~ 26035773 (-)
G690115 NA non-coding downstream 97681 26022582 ~ 26022784 (-)
G690112 NA non-coding downstream 100217 26020049 ~ 26020248 (-)
G690280 NA non-coding upstream 40334 26162614 ~ 26166381 (-)
G690691 NA non-coding upstream 117482 26239762 ~ 26240225 (-)
G690692 NA non-coding upstream 118351 26240631 ~ 26240834 (-)
G690693 NA non-coding upstream 119643 26241923 ~ 26242172 (-)
G690697 NA non-coding upstream 122230 26244510 ~ 26244983 (-)
G690073 NA other downstream 129322 25990678 ~ 25991143 (-)
G690033 NA other downstream 154972 25965179 ~ 25965493 (-)
LOC110529694 LOC106571481 other downstream 314990 25801320 ~ 25805570 (-)
G689810 LOC106571475 other downstream 455800 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 599177 25517566 ~ 25521288 (-)
G691447 LOC106571509 other upstream 741930 26864210 ~ 26868078 (-)
G691747 NA other upstream 1193288 27315568 ~ 27315935 (-)
G692859 NA other upstream 1993456 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 2356537 28478817 ~ 28481944 (-)

Expression


Co-expression Network