LOC110529705 (LOC106571492)


Basic Information

Item Value
gene id LOC110529705
gene name LOC106571492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26266259 ~ 26271258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612156.2
CCATCCCCGCTGTTCCTTCGCAGGGGAAAACATTTTCGACGTCAGAACCTCTCAGCGATGCGACGCACTGCCATCAAGCGAAACACGGGAAACATGTAACGCGCAAGTAGAAGCAATACACCATTTTATGTCATGGTATGTTAAGGTGTATAGGAATACGTCTTTCGTAGGTTAAATCTGATGCGTAAAAGAGCAGCAGAGATATTCGAAAAGACGCGAAACCTGCTGCGTATAAAAGTGGGAGGAAAATAAACTTTTGGAGGTGCTGAAATGTTTTTGATTCTAACAGAAGAGGCGATTTATGTTAGGGGTGGGGATACAACTTAAAGTGAAAGACGCTATTCTGTATCAATGCTAATTGACAGGCGCAACTTTAGGCGATGGCGACCCAGACGGAAGAGAAAGCGCACAGTGACCTAACGAATACGGGACAGTGAGCTAGGCCCACGGCTGTACAAGCCATTGAGACCCGCCCAACAATCGAATAATATCCCGGTGAACTTGGGGAAAGGGAAGAGATTGGACAGCTAGCTTTACGCAGCGCAACGAGCTGAACATATACCCCGACTATACTACAAGCAACTGAGAAGTGGAACTACGTCTGCTGTGCGTAAATTGGAGACGACACGACTTGTTATGATGAACAACGTTATCTAAAGGACGGCGATAAAGGTAAATACAGCCAGTTGATGTGGCCAAAGCACTCTGGCAAGCTACTCCTGCGGCAACACGGCTGCCTTATTTCACAGCAAAGCAAGAGACGGAGGGAGTGAACAATTTTGTCGTTTACATTTTCATATCTACCTTTTATCAGTATGGGCGAGAAAGTCGACTCGAGACGATCGACTCCAGTGGAGGGCTGTTTGGTCGACGGGGAGAGCAGCGACCTCAGCGTGCTGAACTGGGAACAAGTGCAGCGCCTGGACGCCATCCTGGCTGGGTCCATCCCCATCCACGGCCGCTGGAACTTCCCAACCCTGGAGATTAAACCGCGGGACATAGTCAAAGTGGTCCGGTGTCGCATGGAGGAGAAACGCATACATGTCCGGGAGGTCCGCCTGAACGGTTCCGCGGCCAGCCATGTTCTCCACGAGGACAGCGGTTTGGGATGGAAGGATCTGGACTTGATATTCTGTGCCGACATGAAAGGCGAACTAGAGTTTCAGACGGTGAAGGATATAGTTCTTGACGCTCTACTAGACTTCTTACCCGAAGGAGTGAACAAGGAGAAGATCACACCAGTGACCTTAAAGGAGGCCTATGTGCAGAAGATGGTGAAGGTGTGTAATGACTCAGACCGCTGGagcctcatctccctctccaacAACAGAGGCAAGAATGTGGAGTTAAAGTTTGTGGACTCTCTGCGTCGCCAGTTTGAGTTCAGTGTGGACTCCTTCCAGATTCGCCTGGATTCCCTTCTCCTCTTCTACGAGTGCTCCGAGCACCCCATGGCAGCCACCTTCCACCCCACCATCCTGGGAGAGAGCGTCTATGGTGATTTCTCCGCCGCCCTCGACCATCTACGCAAACGCCTCATCTGCACGCGGAGCCCTGAGGAGATTCGCGGTGGTGGTCTACTGAAATACTGCCATCTGCTGGTCCGGGGTTTCTGTGCGGCTTCCGGACCCGAAATGAAACTTCTGCAACGCTACATGTGCTCCAGGTTCTTCATAGACTTCCCAGAGGTGGGCGAGCAGAGGAGGAAGCTGGAATCCTACCTCCAGAACCACTTTGTGGGTCTCGAGGACAGGAAATACGACTATCTGGCCACTCTGCATGGAGTAGTGCGGGAGAGCACAGTGTGCCTGATGGGCCAcgagaggagacagacactgggcctcatctcctccctggcccTTCGGGTCCTTGCCGAGCAGAACGTTATCCCCAACACGGCCAACGTCACCTGCTACTACCAGCCGGCCCCTTACGTCGCAGACGGCAACTTCAGCAACTACTACGTGGCCCAGGTGCAGCACGTTTACCCGCATTACCCATCTCAGCAGTACCCATCTCAGCAGTACCCATCTCAGCAGTACCCACCTCAGCAgtacccacctcaacaacacccTCCGTCACAGTATCCCCttccacaccatccacctccgcACCACCCCATGTACACTGCATGGATGCCCTgcaactgagtgtgtgtgtggacacacacacatacacacagtcactcatGGAACGACAGGATTCTCATCCTAACGAATAGATAGATCACAGCATGATCATGGTTCCTCTCTGTATTCTGATAGAGAGATAAAGATATGTGTAGTTTTGCTTTGGTTTCGAGCAGGATGGATGGGAGAGAAGAGGCCACTTGGATGTGGTCAGACCCTGGAGAGAAGGCTTTCATACAGGGCAGAAAGCCagcggtggaggagaggagggtaaaaaGAGGCGAGCCAGAAGAATGCTGATCTAAGATGATGCTGAGGTTTAAGCCAGGAGGCCAGTTTGTCCATGGCTATTAGCCAGGCCTAGAAGCCAGGCACCTTGCTGAACAACCAAGCACCCCCACAGAGTGACAAGTATAGGAACATTTGGCTTAGGGCTAAATACTACCAGTGTTGATGCAGTGAAATAATCTACATAACCACCGTGATAGTGGTTATGTTTTTGCAAGCAGTGACTTGTATTTGAGACTCACGCTTGAATGTACATACACAGTATACTGCCTAACACTCATACATGtatacaaacacagacacacgatTAAACATCTCACACCCCCAGACATTGCATACATTTACATAGGCACACACTGAGTGTACGGTGAAAGAAAGTGATCACAGAGAATACAGGAAGTTGTGTACATGTCCTGATTGGTTGGCTAATAAGACAGAGCGTTGACATTTCTCTGACCAGTGAAAACAAAAAGTGTGAGAGTCTGACCGCAGACAATGCAAAAGAAGAACTGGACATAGTTTACAAACCAAAGATCTATCTTGTTGATACCCACCATTTGGCTGATCAAGGGGGAAAATATGCAATATGTATGTGAATATTTTGCTTTAAGTGCCTACATGTCTAAAAGGAAGAAATAGGTTGTTATATTTTGTCAATAAACCCAGGCCTGTTCATTTTAGACAAAGGACCATGGGCCTTTTAAGGGTgatagtgtgttacctgtgtaaATGAATGTATTTTGGACCAGAAAGGGACACAATGTGGAATTGTTATTGAAGTAGAGGGACACGGTTGGGACCTTTGACTTGGTGTGTTTCATATCTCCCAACTCAAGAAAGTATAATTGGATGACGAGAGGGAGATGGGTTAGAGTGCAAAAGAAAGTAAGAGCGAGAAGGAGTTTACAAGGAGAGTATGTCAACAGAGCGTACTGTAGGTGTTTTTACCAGTAGAGAGAGGGTCCTGAAAGTGTATTTCGGGAAATATCTTTTAGAGTGTGtatgggaaatgtgttttttcacAAGGTGGAAATTGTCCTTTGCCATTTTCTTCTTTGTGACATTTCTAATGTTTTATTTGGGAGAGGTTTCCATGTGACGTGAGAAAGGGGGAGCGTAAGCATTTTCACCTGTGCAAAGTTTGCACCTgtaatttttaagtaattaaacaTAAAATAAAGAACAAAGTAAAGATTAAGAGAAGGATAACTAAGTTAACATCtcaataaatgtatttttttaaatgatcttgTATTCCCCTTATAAAGATGTTGGGTGAAAACTTTGAGCAGGTGAAAATATTGGGTTAAACTAACCCTATCAATGCAGACACCTCACATCATTCTATTAAACCTGTTCTTGGATATCTTATTTTTGTATCAATCTCTATT
>XM_021612157.2
CCGCTGTTCCTTCGCAGGGGAAAACATTTTCGACGTCAGAACCTCTCAGCGATGCGACGCACTGCCATCAAGCGAAACACGGGAAACATGTAACGCGCAAGTAGAAGCAATACACCATTTTATGTCATGGTATGTTAAGGTGTATAGGAATACGTCTTTCGTAGGTTAAATCTGATGCGTAAAAGAGCAGCAGAGATATTCGAAAAGACGCGAAACCTGCTGCGTATAAAAGTGGGAGGAAAATAAACTTTTGGAGGTGCTGAAATGTTTTTGATTCTAACAGAAGAGGCGATTTATGTTAGGGGTGGGGATACAACTTAAAGTGAAAGACGCTATTCTGTATCAATGCTAATTGACAGGCGCAACTTTAGGCGATGGCGACCCAGACGGAAGAGAAAGCGCACAGTGACCTAACGAATACGGGACAGTGAGCTAGGCCCACGGCTGTACAAGCCATTGAGACCCGCCCAACAATCGAATAATATCCCGGTGAACTTGGGGAAAGGGAAGAGATTGGACAGCTAGCTTTACGCAGCGCAACGAGCTGAACATATACCCCGACTATACTACAAGCAACTGAGAAGTGGAACTACGTCTGCTGTGCGTAAATTGGAGACGACACGACTTGTTATGATGAACAACGTTATCTAAAGGACGGCGATAAAGTATGGGCGAGAAAGTCGACTCGAGACGATCGACTCCAGTGGAGGGCTGTTTGGTCGACGGGGAGAGCAGCGACCTCAGCGTGCTGAACTGGGAACAAGTGCAGCGCCTGGACGCCATCCTGGCTGGGTCCATCCCCATCCACGGCCGCTGGAACTTCCCAACCCTGGAGATTAAACCGCGGGACATAGTCAAAGTGGTCCGGTGTCGCATGGAGGAGAAACGCATACATGTCCGGGAGGTCCGCCTGAACGGTTCCGCGGCCAGCCATGTTCTCCACGAGGACAGCGGTTTGGGATGGAAGGATCTGGACTTGATATTCTGTGCCGACATGAAAGGCGAACTAGAGTTTCAGACGGTGAAGGATATAGTTCTTGACGCTCTACTAGACTTCTTACCCGAAGGAGTGAACAAGGAGAAGATCACACCAGTGACCTTAAAGGAGGCCTATGTGCAGAAGATGGTGAAGGTGTGTAATGACTCAGACCGCTGGagcctcatctccctctccaacAACAGAGGCAAGAATGTGGAGTTAAAGTTTGTGGACTCTCTGCGTCGCCAGTTTGAGTTCAGTGTGGACTCCTTCCAGATTCGCCTGGATTCCCTTCTCCTCTTCTACGAGTGCTCCGAGCACCCCATGGCAGCCACCTTCCACCCCACCATCCTGGGAGAGAGCGTCTATGGTGATTTCTCCGCCGCCCTCGACCATCTACGCAAACGCCTCATCTGCACGCGGAGCCCTGAGGAGATTCGCGGTGGTGGTCTACTGAAATACTGCCATCTGCTGGTCCGGGGTTTCTGTGCGGCTTCCGGACCCGAAATGAAACTTCTGCAACGCTACATGTGCTCCAGGTTCTTCATAGACTTCCCAGAGGTGGGCGAGCAGAGGAGGAAGCTGGAATCCTACCTCCAGAACCACTTTGTGGGTCTCGAGGACAGGAAATACGACTATCTGGCCACTCTGCATGGAGTAGTGCGGGAGAGCACAGTGTGCCTGATGGGCCAcgagaggagacagacactgggcctcatctcctccctggcccTTCGGGTCCTTGCCGAGCAGAACGTTATCCCCAACACGGCCAACGTCACCTGCTACTACCAGCCGGCCCCTTACGTCGCAGACGGCAACTTCAGCAACTACTACGTGGCCCAGGTGCAGCACGTTTACCCGCATTACCCATCTCAGCAGTACCCATCTCAGCAGTACCCATCTCAGCAGTACCCACCTCAGCAgtacccacctcaacaacacccTCCGTCACAGTATCCCCttccacaccatccacctccgcACCACCCCATGTACACTGCATGGATGCCCTgcaactgagtgtgtgtgtggacacacacacatacacacagtcactcatGGAACGACAGGATTCTCATCCTAACGAATAGATAGATCACAGCATGATCATGGTTCCTCTCTGTATTCTGATAGAGAGATAAAGATATGTGTAGTTTTGCTTTGGTTTCGAGCAGGATGGATGGGAGAGAAGAGGCCACTTGGATGTGGTCAGACCCTGGAGAGAAGGCTTTCATACAGGGCAGAAAGCCagcggtggaggagaggagggtaaaaaGAGGCGAGCCAGAAGAATGCTGATCTAAGATGATGCTGAGGTTTAAGCCAGGAGGCCAGTTTGTCCATGGCTATTAGCCAGGCCTAGAAGCCAGGCACCTTGCTGAACAACCAAGCACCCCCACAGAGTGACAAGTATAGGAACATTTGGCTTAGGGCTAAATACTACCAGTGTTGATGCAGTGAAATAATCTACATAACCACCGTGATAGTGGTTATGTTTTTGCAAGCAGTGACTTGTATTTGAGACTCACGCTTGAATGTACATACACAGTATACTGCCTAACACTCATACATGtatacaaacacagacacacgatTAAACATCTCACACCCCCAGACATTGCATACATTTACATAGGCACACACTGAGTGTACGGTGAAAGAAAGTGATCACAGAGAATACAGGAAGTTGTGTACATGTCCTGATTGGTTGGCTAATAAGACAGAGCGTTGACATTTCTCTGACCAGTGAAAACAAAAAGTGTGAGAGTCTGACCGCAGACAATGCAAAAGAAGAACTGGACATAGTTTACAAACCAAAGATCTATCTTGTTGATACCCACCATTTGGCTGATCAAGGGGGAAAATATGCAATATGTATGTGAATATTTTGCTTTAAGTGCCTACATGTCTAAAAGGAAGAAATAGGTTGTTATATTTTGTCAATAAACCCAGGCCTGTTCATTTTAGACAAAGGACCATGGGCCTTTTAAGGGTgatagtgtgttacctgtgtaaATGAATGTATTTTGGACCAGAAAGGGACACAATGTGGAATTGTTATTGAAGTAGAGGGACACGGTTGGGACCTTTGACTTGGTGTGTTTCATATCTCCCAACTCAAGAAAGTATAATTGGATGACGAGAGGGAGATGGGTTAGAGTGCAAAAGAAAGTAAGAGCGAGAAGGAGTTTACAAGGAGAGTATGTCAACAGAGCGTACTGTAGGTGTTTTTACCAGTAGAGAGAGGGTCCTGAAAGTGTATTTCGGGAAATATCTTTTAGAGTGTGtatgggaaatgtgttttttcacAAGGTGGAAATTGTCCTTTGCCATTTTCTTCTTTGTGACATTTCTAATGTTTTATTTGGGAGAGGTTTCCATGTGACGTGAGAAAGGGGGAGCGTAAGCATTTTCACCTGTGCAAAGTTTGCACCTgtaatttttaagtaattaaacaTAAAATAAAGAACAAAGTAAAGATTAAGAGAAGGATAACTAAGTTAACATCtcaataaatgtatttttttaaatgatcttgTATTCCCCTTATAAAGATGTTGGGTGAAAACTTTGAGCAGGTGAAAATATTGGGTTAAACTAACCCTATCAATGCAGACACCTCACATCATTCTATTAAACCTGTTCTTGGATATCTTATTTTTGTATCAATCTCTATT

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612156.2 False 3808 mRNA 0.47 2 26266259 26271258
XM_021612157.2 True 3660 mRNA 0.47 3 26266265 26271258

Neighbor

gene id symbol gene type direction distance location
LOC110529702 LOC106607944 coding upstream 93912 26133191 ~ 26195544 (+)
ngs LOC106571488 coding upstream 147291 26115006 ~ 26118968 (+)
LOC110529699 LOC106571484 coding upstream 185289 26077497 ~ 26080970 (+)
LOC110529698 LOC106571483 coding upstream 259630 26003595 ~ 26006629 (+)
LOC110529695 nagab coding upstream 456352 25805901 ~ 25809907 (+)
LOC110529707 LOC106571493 coding downstream 91919 26363177 ~ 26376176 (+)
LOC110529706 LOC106571495 coding downstream 109839 26381097 ~ 26393547 (+)
LOC110529712 LOC106571498 coding downstream 194920 26466178 ~ 26590958 (+)
kcnh5a LOC106571504 coding downstream 342350 26613608 ~ 26734774 (+)
ppm1ab LOC106571506 coding downstream 475866 26747124 ~ 26758023 (+)
G690309 NA non-coding upstream 5784 26259581 ~ 26260475 (+)
G690307 NA non-coding upstream 13329 26250617 ~ 26252930 (+)
G690304 NA non-coding upstream 15730 26248083 ~ 26250529 (+)
G690333 NA non-coding upstream 23603 26242359 ~ 26242656 (+)
G690188 NA non-coding upstream 116558 26148973 ~ 26149701 (+)
G690308 NA non-coding downstream 3394 26274652 ~ 26277497 (+)
G690348 NA non-coding downstream 54072 26325330 ~ 26348451 (+)
G690386 NA non-coding downstream 80771 26352029 ~ 26352303 (+)
G690394 NA non-coding downstream 89427 26360685 ~ 26360884 (+)
G690428 NA non-coding downstream 157859 26429117 ~ 26430939 (+)
LOC110529690 LOC106571476 other upstream 584532 25678604 ~ 25685894 (+)
G688823 NA other upstream 1204809 25058953 ~ 25061450 (+)
G688613 NA other upstream 1281433 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 2275260 23961761 ~ 23991295 (+)
jag2b LOC106571712 other downstream 1285026 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1624443 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1699218 27951635 ~ 27972016 (+)
G692424 NA other downstream 1798642 28069900 ~ 28070228 (+)

Expression


Co-expression Network