LOC110529707 (LOC106571493)


Basic Information

Item Value
gene id LOC110529707
gene name LOC106571493
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26363177 ~ 26376176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612159.2
GTGGCTTCCGCATTCGCCTATCACTCAACGAAGCTGAATGGGGGATACGGTGGATGTTGATAATCTCTACCATACAAAGGGGCCATCGGTCTGTCCAGTCAGTGCAGAGGTCCCTGTAGTGCAATATCCGCATGCGCAGTGCCATCAGGCTGGTCGGGTATCCTATAGATCTTAAGCGATGTGTTTCAGCAGCCAGCACGGACCTCATACATGATTTCTTTGGGATAGATTTCCGCTTGCCTTTGCATTTTTGCCAAATTTGGGGTGGATGTCTAATTGTCCTTATAGCAGTGTTGGGGATCAGCGGCTATAACGGCAGAATACGGTCATTTAAAGGCGTTGTCCATCACTTTGCACCGGATGTCAGTACACGCAACTAAATCTCGAGAAGCATAAGCAGGACCAAATCCAGACGCAGGCATGGAAGCTGTCACCCACTTTATGAATGACACGGTAGAGTTCTACAGATGGAGCCTTACTATAGCAGACAAGCGAGTGGAGAAATGGCCGATGATGTCGTCCCCCGCCCCCACCCTGGCCATCAGCTGCCTGTACTTGCTCTTCCTGTGGGCGGGGCCTAAATACATGCAGAATCGCGAGCCTTTCCAGCTAAGGAAGACCCTCATAGTGTACAACTTCAGTATGGTGATACTCAACTTTTACATCGCCAAAGAGCTCCTCCTGGGTGCAAGAGCAGCGGGGTACAGCTACCTATGTCAACCTGTCAGCTACTCCAACGACGTCAACGAAGTCAGGATAGCGTCTGCTCTGTGGTGGTACTACATCTCTAAGGGAGTGGAGTATCTGGACACGGTGTTCTTCATCCTGAGGAGGAAGTTTAACCAGGTCAGCTTCCTCCATGTCTACCATCACTGCACCATGTTCATCCTCTGGTGGATCGGAATCAAGTGGGTCCCTGGAGGACAGTCGTTCTTCGGAGCAGGCATAAACTCATCCATCCATGTCCTGATGTATGGATACTATGGCCTGGCCGCTTTCGGACCCAAGATCCAGAAATTCCTCTGGTGGAAGAAATACCTGACCATCATTCAGATGATCCAGTTCCATGTGACCATCGGCCATGCAGGCTACTCCCTCTACACTGGCTGCCCTTTCCCCGCTTGGATGCAGTGGGCCCTAATTGGCTACGCCGTCACCTTCATCATCCTATTCGGCAACTTCTACTACCAGACCTACCGGCGTACCCCACACTCCGCCCCCAAGGCGGCCAAATCCGTCACCAACGGCATTTCCACAGCAACCAACGGCTACAACAagttagaggaggtagaggagaacgGGAAGAAGCAGCAGAAAAAGGGAAGAGTGAagagggagtgaggaggaagaggagaggacggaGGGAGCTTCTGTCAGACCAATTGGAGGACTGTGGGGTGAAAGGGCAGGGGAGGTAGGGGGGGTCAGGGGTGAAAGTTCAGAGGGCAGATGGGATTCCACCACACCCCTTCCCACGCAGGATGTTTTGAGGATGTGAATTGTGACCAACTTGctggtgaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgggggatTGGTGAGGTTTGGGTATGGGGGGAtaggggtggggggagggtgtTGGTTGTCTATATAGtagttatttttttataaaatcgCTGCTCTTCATGTAGAGTCTGTGCTCTGTCTCTTTACTTTGGGGTCCTGGTCAAAGATAAGACCGTAAaaagaccacaacacaaccacagagACCACAGGGACTCTGACCACAGGGACTGTTTCCAACCAAAACTCCACCCATTTTGTACTTTTATTCGTTTAACTAAATGCTGATGTATTTTGTAGCATTGTAAATTAGATTCTATGAAATTTGTACCAAAGAGGGTTTATTTTGCATTTGGGCGATGAGTAAGAAAAATACTGGTGGAGCATTGTTAAGGATTAAACATGGTTTTAGGGAACAGGAGCTGTTCtcaattctatttttgttcctCTCTATGTGTCGCAGACACAATTGTGTCAGTACTTAAGTACCGGTCTACCTGGAACACAGACTAACTGCAAGCCCCCTCTGCCATACACACCTGCCCTAACGCACATaatataaacaaacacacacattcctggaatgtgtgtctgtgagagagattgagggaatgATGTGCACATTGAATGCATCGTAGTGAATCTATAGGGGGTTTGGGTGGGTAGTCATATGTGCAAGTTGTTAGTATATCATTATGGAGTTTGGGTgggtaacatactgtacatgcaaatAGGCTGACAAACACCTTTACTGCTAACTGAGTGTTTATCTATTTGTTTGGTTATTAAATTGGTCCTGTGCTTTGAtattgttatttttgttgttgtggtggatcTCACGGATATCCTGcgttatttttctcattttgtgctGTGCAACTGAGAAACATGTCTAACTCAAGACAACCAAAAAGGACTGAGGGGGAAAGGGATATTTCATCTCAAAGGGCTTTAAAAAAATACTatattaattattttatttaaataaaacaCATACAGCTAGCTACTGGCTGCAGGTACAATGGAAATAAAGAGGATGCCAACAA

Function

NR:

description
elongation of very long chain fatty acids protein 4-like

GO:

id name namespace
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10249 ELOVL4; elongation of very long chain fatty acids protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612159.2 True 2660 mRNA 0.47 7 26363177 26376176

Neighbor

gene id symbol gene type direction distance location
LOC110529705 LOC106571492 coding upstream 91919 26266259 ~ 26271258 (+)
LOC110529702 LOC106607944 coding upstream 190830 26133191 ~ 26195544 (+)
ngs LOC106571488 coding upstream 244209 26115006 ~ 26118968 (+)
LOC110529699 LOC106571484 coding upstream 282207 26077497 ~ 26080970 (+)
LOC110529698 LOC106571483 coding upstream 356548 26003595 ~ 26006629 (+)
LOC110529706 LOC106571495 coding downstream 4921 26381097 ~ 26393547 (+)
LOC110529712 LOC106571498 coding downstream 90002 26466178 ~ 26590958 (+)
kcnh5a LOC106571504 coding downstream 237432 26613608 ~ 26734774 (+)
ppm1ab LOC106571506 coding downstream 370948 26747124 ~ 26758023 (+)
LOC110529717 LOC106571508 coding downstream 423414 26799590 ~ 26835405 (+)
G690394 NA non-coding upstream 2293 26360685 ~ 26360884 (+)
G690386 NA non-coding upstream 10874 26352029 ~ 26352303 (+)
G690348 NA non-coding upstream 14726 26325330 ~ 26348451 (+)
G690308 NA non-coding upstream 85680 26274652 ~ 26277497 (+)
G690309 NA non-coding upstream 102702 26259581 ~ 26260475 (+)
G690428 NA non-coding downstream 52941 26429117 ~ 26430939 (+)
G690439 LOC106571501 non-coding downstream 73248 26449424 ~ 26449733 (+)
G690443 NA non-coding downstream 76212 26452388 ~ 26460132 (+)
G690442 NA non-coding downstream 86479 26462655 ~ 26462892 (+)
G690530 NA non-coding downstream 218887 26595063 ~ 26650001 (+)
LOC110529690 LOC106571476 other upstream 681450 25678604 ~ 25685894 (+)
G688823 NA other upstream 1301727 25058953 ~ 25061450 (+)
G688613 NA other upstream 1378351 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 2372178 23961761 ~ 23991295 (+)
jag2b LOC106571712 other downstream 1180108 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1519525 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1594300 27951635 ~ 27972016 (+)
G692424 NA other downstream 1693724 28069900 ~ 28070228 (+)

Expression


Co-expression Network