LOC110529708 (LOC106571496)


Basic Information

Item Value
gene id LOC110529708
gene name LOC106571496
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26422495 ~ 26426074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612161.2
GCTAAAACGTGTTATGTCCatgtcctctatccatctctatggcaATAGGCACAACTCGGATGTAAAGTCGTGTTTTTTTAAGTTGGCAAAATGTCACATGCGTCTACTTATATCAGTGCTTTCATAACAACATAACCATTACGAAACTTATATtcaatcaaataagcctcacgaaGCAAATTAACAATGAcgtttttgttgaccaaattcggcACCCGCTCATTGGCGTCTACACAAAAATGTCTCACTTCATGGCTTTATTTTCTTGACAGATTTTGTTCAGAGTaaaacctctcgcttcgccttTTCTTCTctgaaagaggaggaaggcttCTATTTTGCTTTGTTTTGGTAGCATCTATTTTGCGAACTGTCTAAATAGCTACGTCACTGAGCGAAGTGCAAACAGTATTTTTGACAGAGAGGAACTTTGAGAGAATACAGATTTGATCCTGATGACATCCCAGTAACTGCACTTGAAACACATGGCGAGCTGTGGTGAGGTGGACCACTCAGTGGACTCTGTGTCCTCCTCAAAGGTAGAAGACGGAGGGGACGCCTTCACTGGTGACTCCCCCAGCTCACCTACCCCCTCGGCCAACCCCGTGCCGGAATGTGCCATCTGCCTCCAGACCTGTGTCCACCCAGTTCGCCTGCCCTGCCGCCACGTTTTCTGTTTCCTGTGCGTCAAAGGAGCCTCCTGGCACAGCAAGCGCTGCGCTCTTTGCCGACAGGAAGTACCTGAGGACTTCCTGGAGCATCCAACTCTGCTGTCCCCAGAGGAGCTGAAGGCAGCAGCCgcaggaggacgaggaggaaccGGGCCAGGGAGCGCTGGCGGAGACCATGCATGGTACTACGAGGGGAGGAACGGCTGGTGGCAGTATGACGAGAGGACCAGCCGTGAGCTGGAGGACGCTTTCGCCAAGGGCAGGAAGAGCGCTGAGATGCTGATTGCTGGCTTCCTGTACGTGGCTGACCTGGAGAACATGGTGCAGTATCGCCGCAACGAGCATGGTCGCCGCCGACGCATGAAGCGTGATGTGGTAGACATTCCCAAAAAGGGCGTGGCCGGACTCAGACTGGACCCTGACCCCACCCCGCCAGTTGTTGCCGTGGCAGCTGTTCCGGTCACAGCGGCAACAGTGGAACGGCCAAGCTCTGCTGATGGGGAGGATGTGACTGGACGGTCGCAGGCGGGGGGCTTAGGGGTTGTCATCCCGGCTCCTCCAGTCAGACCCCCCACAGTCCTGGGTGCCCACCCTGCCACCTCAGCCTCCATCTCCCTTGAAGACTCTCTGTCCCAGCTCCTCATCAGCCaaccagaggaggaggaagaggagaatgaAGAGGTAGCTTCAAGAATAAGCCAGGTGTACGAGTCAGCATCTGGTAGCAGTGAGGATgaggatggtggtggtgatgaagtAGGGCGGGggtgggatagggagagggggggacGGGAAGTTGGGTCTCGACGGAGGCCCAGACATAGACTCCTACAGCGCCGGCTCAGAGAGGTCCAGCCTGACAGACTGCCACCTGGAGGTGGGTCCTCCAGCGGAGGCCTCAGTGTGCGCTCACGCAGCCCTGACGGTCAATGCACTGTCACTGAGGTGTGACCACAACTGGACCACTGTCTCTGCACTCAACCGGCTCAGCAAAAAACAAATTCACTCCATGCCCATGGTGGTATTGAATAACCCAGTGGAAGACACCAGATCAGCCATTTGCATTACATATACAGCAACATAGACTAATCCATAATTTATAATACGTCAGCCAGTAAGATTATGCAAAATAGCACACATAATAAAATAGCCCATACTGTTCCACTCTCTGCCACTAACCATTTGAGCCTGTGTTAGTACCAAAAGGCATGGTCAGCCTTAATAGGCTATCTACAGAGAAATTGTGAAATGAGGTTTGAGGTTTGGAGATGACTTAACCTTTTAAATGTAGCATCCCATCTCTAACAGGAGGCAAAAATCTTGTTTTGTCGGTACATGGCTGTTTACTGTAATGATTGTTCTAACATATCCATTGAGCGTacgtgagtcagtgtgtgtattgAAGTCATAGTCCAGAAGAATATAAAAATGTTTCGTAAATGTCCAATGCAGCTGATTTGATCTCGATATCAAATTagttctgggtaacaattaagtaccttaaaTAGCACCTTTTGTTTGGTATTTTATTACGACCCACAAGAGGTCGCTGTAAGCTTGGCCACAACAGTTCTGCAAACCCACCCCATAGATCCCCATCTTGACACAGAACTCACCAAGCCACCAATAGGAAGACATACTGTGTCTTTCTCGCCTGTTTGCAGCCGTTGAAACTAATTTCAAGTGAAAACACTTGTAACTACTGAATGGAAGGTATTTTAAATTACAACAAGATCACAAATATGCACAGAGGTTCTATACAACAGAGGTGAAGCATGGAAATGAGCAAGCAGAGATTGAGAATGAAAGCTTCTTAAATCTGTCAGTAGCTATGCGCACGCTCAATTCAAACGTGATGCATGTCACACATATTCCTAACTAGAAACGGGGACCTACAAAGACAGGTAGAAGTAGGAAGAAGTGATTGGAGATTTTTTTACGAAGGACTTCCTCATGAAAGATGAAACCAATGAAGATGTTGAGAAAAGATGCTGAAGATACTATGAAAACTGGATGGAAGATGCATTGCGCACACACCTGATCATGAGTGTTTTGAGTTGTTTGAACTTTGAACCTATTATTTTGATACTCTTCTGTCAGTTGTTTATTGCCATGTTTTTAAAAGTATCTTTGACTTTTAATGAATATGATTTAACTTCCATGTGTGGTCTTGTTTAACTGTGATGTTTTATCAAAACAATAAAGTGTTTGTCTATTATTTGACCTTAATTGAAGTCATGAGTTCGATGTT

Function

NR:

description
E3 ubiquitin-protein ligase rnf146-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612161.2 True 2922 mRNA 0.47 3 26422495 26426074

Neighbor

gene id symbol gene type direction distance location
LOC110529703 LOC106571490 coding downstream 246856 26172446 ~ 26175639 (-)
LOC110531082 pgm3 coding downstream 300215 26120465 ~ 26122280 (-)
LOC110529700 LOC106571487 coding downstream 315694 26094941 ~ 26106801 (-)
LOC110529220 LOC106571486 coding downstream 327886 26087446 ~ 26094609 (-)
LOC110529219 NA coding downstream 404713 26006882 ~ 26017782 (-)
cenpw LOC106571497 coding upstream 2966 26428702 ~ 26430888 (-)
LOC110529710 LOC106571501 coding upstream 18043 26444117 ~ 26463361 (-)
LOC110529713 l3hypdh coding upstream 165456 26591530 ~ 26596738 (-)
LOC110529714 LOC106571503 coding upstream 172956 26599030 ~ 26602934 (-)
LOC110529723 NA coding upstream 744864 27170938 ~ 27186859 (-)
G690801 LOC106571494 non-coding downstream 36769 26384583 ~ 26385726 (-)
G690783 NA non-coding downstream 61180 26361027 ~ 26361315 (-)
G690780 NA non-coding downstream 65943 26356322 ~ 26356552 (-)
G690776 NA non-coding downstream 69756 26352414 ~ 26352739 (-)
G690705 NA non-coding downstream 96060 26264914 ~ 26326435 (-)
G691008 NA non-coding upstream 289143 26715217 ~ 26715507 (-)
G691010 NA non-coding upstream 293570 26719644 ~ 26719843 (-)
G691038 NA non-coding upstream 332066 26758140 ~ 26766768 (-)
G691054 NA non-coding upstream 368335 26794409 ~ 26794617 (-)
G690073 NA other downstream 431352 25990678 ~ 25991143 (-)
G690033 NA other downstream 457002 25965179 ~ 25965493 (-)
LOC110529694 LOC106571481 other downstream 617020 25801320 ~ 25805570 (-)
G689810 LOC106571475 other downstream 757830 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 901207 25517566 ~ 25521288 (-)
G691447 LOC106571509 other upstream 438136 26864210 ~ 26868078 (-)
G691747 NA other upstream 889494 27315568 ~ 27315935 (-)
G692859 NA other upstream 1689662 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 2052743 28478817 ~ 28481944 (-)

Expression


Co-expression Network