LOC110529717 (LOC106571508)


Basic Information

Item Value
gene id LOC110529717
gene name LOC106571508
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26799590 ~ 26835405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985196.1
TAGTCACAAGGCTAAATAGTACATTGAAAGTGGTGGGGAAACGTTCGAATGGGAGGTGTGATAATTGTCCCgaggagatggagacagtggAACATGTTCTATTTCAATTACAGAAATATATGAGAGAAAGGGAGCGATTGTTATTAGATATGAGGAGTAATGGGGTTGAAGAGCCAGGATTAAGTGAACTCTTGGGGAAATCTTCGGGAGATGTAGTGTTTAATAATGTATTTGGTTTCCTTCGGGAGACGAGATTATTGGGTAGGATTTAGACCGTCAGTGTCTCTGGTCCACACTCTAGTCAGGTTGGTGgcagtaatgcaccttaaagttggttgccaactgccatataaactccacagaagaagaagaggaacgTATTAGGCTGATGCACAGCCCATACAGAAGCTGTCGGCATGCACCCATGACATTTGTTTGCAGACCACAGTAATATCGAATAAGAAGATTAGGCACGGACGGCAAGCAGTTGTGTTGAAAAGGTCGCATGTTGAGCTCAGAGAGGCAAGTCAACTTCACTGAAAAGGGTAGCCAATCACCATACTTCTGAAATGCCGAATGGTAAAGCGAAGGATCGTTTTCTGAAGCCACTTGTAGCAGACTACGAGGAACTGCTGGGTCGTTTCCAACAGACGGAATCTGTGCGGTTTGAGGAATTTACTGCTATTTGGAGAAACATGGGCTTCTCAAGTGTATTTTACTTCCAGATCAGAGTGGGGGGTCTGTACCTTCTCTATGGCCTATACCACACACAGCTTGCTTCACCTAAAGAGAAGatcAGAATTGCCCTAAAGGACTGGGAGCAAATTCAGAAGTTTTACCAGGATTCGGTGAATTCGCAGCACTATGATGCAGTTTACATTATCAGGAAGCTAATAGCTGAGAATGCTGTCCTTTACACCGCCATGCCTCAGATGTTGACCTTCCGTGTGAAGAAGAAGCCCCAGCATCACAAGGTGTGCGAGGAGTTCCGTGACCGACCAGAAAGGGTCAAGGACCTCATCTCTACAGATATGCTGCAAGAGGTGGCTAACATTCAGGGTCACCATGAGCGGCTGAAGGCGTCCGTCTTGGAGAGGTCATCCATTGCGGTGACCCAACAGGACCTGCCTGCCCGCTTGCACAGCTGTGTGCTTGAGTTCCTCCACTGGCAGGACAGGCATGAGAACCATGGAGATGCAGACCACTTGGTTTATGCTGAGGAAAAAGCCCAGCAGGTCGAGTCTTCCAATAGGGCACAGCTTCTGGCATCCATCAAGACAAAATCATACGGGTGTCTTGCAGAGGCCTCGAAGTCACGGCGGCATCGCCAGGTGGAGATGGACACATCCATTTCTGGAACAGGCTACATTAAAGAGGCTCCCAAATATCACAAAAGTAGGGCGCCATCACTCAAGGCCCGAACCAACAAGAACCTCTGTGGGGAAGGAGATGAACAGAAGATCCAATATTGGCTCCTTAGTGCTGCAGAGGAGGACAAGACTGCATTGAAAAGACAGAAGCGAAAACACAGTTTCCGGTGGTGAAGAGAATGCGGAGGATTTGGGCTATAACTGCTGCACTTTTGGAGAGGCTAATACATTAGGAGAACACTAAATATCCACATAATGAATATATGCATCAAGTTGTCTGAGGGCTTGAGCCAGTTAATTACTGTGCATATAACAGGAAATGTAATTAATAGAGCACTTTTGTTTTTGTGTACAAATAAATGTGGCACCAAATTTGCATCATT
>XM_036985197.1
CAAGGCTAAATAGTACATTGAAAGTGGTGGGGAAACGTTCGAATGGGAGGTGTGATAATTGTCCCgaggagatggagacagtggAACATGTTCTATTTCAATTACAGAAATATATGAGAGAAAGGGAGCGATTGTTATTAGATATGAGGAGTAATGGGGTTGAAGAGCCAGGATTAAGTGAACTCTTGGGGAAATCTTCGGGAGATGTAGTGTTTAATAATGTATTTGGTTTCCTTCGGGAGACGAGATTATTGGGTAGGATTTAGACCGTCAGTGTCTCTGGTCCACACTCTAGTCAGGTTGGTGgcagtaatgcaccttaaagttggttgccaactgccatataaactccacagaagaagaagaggaacgTATTAGGCTGATGCACAGCCCATACAGAAGCTGTCGGCATGCACCCATGACATTTGTTTGCAGACCACAGTAATATCGAATAAGAAGATTAGGCACGGACGGCAAGCAGTTGTGTTGAAAAGGTCGCATGTTGAGCTCAGAGAGGCAAGTCAACTTCACTGAAAAGGGTAGCCAATCACCATACTTCTGAAATGCCGAATGCGGTTCACTTGCTGGTAATGAGATGAGGGAATTCTGCCACCTAACCCTGACCATGGCCTTCAACTACTTCTTACCCCCATATAGCTTCCAGATCAGAGTGGGGGGTCTGTACCTTCTCTATGGCCTATACCACACACAGCTTGCTTCACCTAAAGAGAAGatcAGAATTGCCCTAAAGGACTGGGAGCAAATTCAGAAGTTTTACCAGGATTCGGTGAATTCGCAGCACTATGATGCAGTTTACATTATCAGGAAGCTAATAGCTGAGAATGCTGTCCTTTACACCGCCATGCCTCAGATGTTGACCTTCCGTGTGAAGAAGAAGCCCCAGCATCACAAGGTGTGCGAGGAGTTCCGTGACCGACCAGAAAGGGTCAAGGACCTCATCTCTACAGATATGCTGCAAGAGGTGGCTAACATTCAGGGTCACCATGAGCGGCTGAAGGCGTCCGTCTTGGAGAGGTCATCCATTGCGGTGACCCAACAGGACCTGCCTGCCCGCTTGCACAGCTGTGTGCTTGAGTTCCTCCACTGGCAGGACAGGCATGAGAACCATGGAGATGCAGACCACTTGGTTTATGCTGAGGAAAAAGCCCAGCAGGTCGAGTCTTCCAATAGGGCACAGCTTCTGGCATCCATCAAGACAAAATCATACGGGTGTCTTGCAGAGGCCTCGAAGTCACGGCGGCATCGCCAGGTGGAGATGGACACATCCATTTCTGGAACAGGCTACATTAAAGAGGCTCCCAAATATCACAAAAGTAGGGCGCCATCACTCAAGGCCCGAACCAACAAGAACCTCTGTGGGGAAGGAGATGAACAGAAGATCCAATATTGGCTCCTTAGTGCTGCAGAGGAGGACAAGACTGCATTGAAAAGACAGAAGCGAAAACACAGTTTCCGGTGGTGAAGAGAATGCGGAGGATTTGGGCTATAACTGCTGCACTTTTGGAGAGGCTAATACATTAGGAGAACACTAAATATCCACATAATGAATATATGCATCAAGTTGTCTGAGGGCTTGAGCCAGTTAATTACTGTGCATATAACAGGAAATGTAATTAATAGAGCACTTTTGTTTTTGTGTACAAATAAATGTGGCACCAAATTTGCATCATT
>XM_036985195.1
AAGGCTAAATAGTACATTGAAAGTGGTGGGGAAACGTTCGAATGGGAGGTGTGATAATTGTCCCgaggagatggagacagtggAACATGTTCTATTTCAATTACAGAAATATATGAGAGAAAGGGAGCGATTGTTATTAGATATGAGGAGTAATGGGGTTGAAGAGCCAGGATTAAGTGAACTCTTGGGGAAATCTTCGGGAGATGTAGTGTTTAATAATGTATTTGGTTTCCTTCGGGAGACGAGATTATTGGGTAGGATTTAGACCGTCAGTGTCTCTGGTCCACACTCTAGTCAGGTTGGTGgcagtaatgcaccttaaagttggttgccaactgccatataaactccacagaagaagaagaggaacgTATTAGGCTGATGCACAGCCCATACAGAAGCTGTCGGCATGCACCCATGACATTTGTTTGCAGACCACAGTAATATCGAATAAGAAGATTAGGCACGGACGGCAAGCAGTTGTGTTGAAAAGGTCGCATGTTGAGCTCAGAGAGGCAAGTCAACTTCACTGAAAAGGGTAGCCAATCACCATACTTCTGAAATGCCGAATGGTAAAGCGAAGGATCGTTTTCTGAAGCCACTTGTAGCAGACTACGAGGAACTGCTGGGTCGTTTCCAACAGACGGAATCTGTGCGGTTTGAGGAATTTACTGCTATTTGGAGAAACATGGGCTTCTCAAGTGTATTTTACGGTTCACTTGCTGGTAATGAGATGAGGGAATTCTGCCACCTAACCCTGACCATGGCCTTCAACTACTTCTTACCCCCATATAGCTTCCAGATCAGAGTGGGGGGTCTGTACCTTCTCTATGGCCTATACCACACACAGCTTGCTTCACCTAAAGAGAAGatcAGAATTGCCCTAAAGGACTGGGAGCAAATTCAGAAGTTTTACCAGGATTCGGTGAATTCGCAGCACTATGATGCAGTTTACATTATCAGGAAGCTAATAGCTGAGAATGCTGTCCTTTACACCGCCATGCCTCAGATGTTGACCTTCCGTGTGAAGAAGAAGCCCCAGCATCACAAGGTGTGCGAGGAGTTCCGTGACCGACCAGAAAGGGTCAAGGACCTCATCTCTACAGATATGCTGCAAGAGGTGGCTAACATTCAGGGTCACCATGAGCGGCTGAAGGCGTCCGTCTTGGAGAGGTCATCCATTGCGGTGACCCAACAGGACCTGCCTGCCCGCTTGCACAGCTGTGTGCTTGAGTTCCTCCACTGGCAGGACAGGCATGAGAACCATGGAGATGCAGACCACTTGGTTTATGCTGAGGAAAAAGCCCAGCAGGTCGAGTCTTCCAATAGGGCACAGCTTCTGGCATCCATCAAGACAAAATCATACGGGTGTCTTGCAGAGGCCTCGAAGTCACGGCGGCATCGCCAGGTGGAGATGGACACATCCATTTCTGGAACAGGCTACATTAAAGAGGCTCCCAAATATCACAAAAGTAGGGCGCCATCACTCAAGGCCCGAACCAACAAGAACCTCTGTGGGGAAGGAGATGAACAGAAGATCCAATATTGGCTCCTTAGTGCTGCAGAGGAGGACAAGACTGCATTGAAAAGACAGAAGCGAAAACACAGTTTCCGGTGGTGAAGAGAATGCGGAGGATTTGGGCTATAACTGCTGCACTTTTGGAGAGGCTAATACATTAGGAGAACACTAAATATCCACATAATGAATATATGCATCAAGTTGTCTGAGGGCTTGAGCCAGTTAATTACTGTGCATATAACAGGAAATGTAATTAATAGAGCACTTTTGTTTTTGTGTACAAATAAATGTGGCACCAAATTTGCATCATT

Function

NR:

description
snRNA-activating protein complex subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985196.1 False 1753 mRNA 0.46 11 26799590 26835405
XM_036985197.1 False 1692 mRNA 0.47 10 26799596 26835405
XM_036985195.1 True 1830 mRNA 0.46 11 26799597 26835405

Neighbor

gene id symbol gene type direction distance location
ppm1ab LOC106571506 coding upstream 42548 26747124 ~ 26758023 (+)
kcnh5a LOC106571504 coding upstream 64816 26613608 ~ 26734774 (+)
LOC110529712 LOC106571498 coding upstream 208632 26466178 ~ 26590958 (+)
LOC110529706 LOC106571495 coding upstream 406043 26381097 ~ 26393547 (+)
LOC110529707 LOC106571493 coding upstream 423414 26363177 ~ 26376176 (+)
si:ch211-212g7.6 LOC106571509 coding downstream 10275 26845680 ~ 26868116 (+)
atp5mpl cssa15h14orf2 coding downstream 54390 26889795 ~ 26891532 (+)
ppp1r13bb ppp1r13b coding downstream 81264 26916669 ~ 26997843 (+)
LOC110529722 LOC106571714 coding downstream 175754 27011159 ~ 27244178 (+)
nudt14 LOC106571713 coding downstream 556312 27391717 ~ 27483687 (+)
G690627 NA non-coding upstream 89173 26710210 ~ 26710417 (+)
G690619 NA non-coding upstream 97576 26701776 ~ 26702014 (+)
G690606 NA non-coding upstream 109711 26689644 ~ 26689879 (+)
G690530 NA non-coding upstream 149589 26595063 ~ 26650001 (+)
G691111 NA non-coding downstream 53183 26888588 ~ 26888904 (+)
G691113 NA non-coding downstream 60045 26895450 ~ 26895702 (+)
G691116 NA non-coding downstream 62215 26897620 ~ 26897850 (+)
G691119 NA non-coding downstream 67220 26902625 ~ 26902882 (+)
LOC110529702 LOC106607944 other upstream 604046 26133191 ~ 26195544 (+)
LOC110529690 LOC106571476 other upstream 1117863 25678604 ~ 25685894 (+)
G688823 NA other upstream 1738140 25058953 ~ 25061450 (+)
G688613 NA other upstream 1814764 24982729 ~ 24984826 (+)
jag2b LOC106571712 other downstream 720879 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1060296 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1135071 27951635 ~ 27972016 (+)
G692424 NA other downstream 1234495 28069900 ~ 28070228 (+)
btbd7 btbd7 other downstream 1659880 28495104 ~ 28605625 (+)

Expression


Co-expression Network