atp5mpl (cssa15h14orf2)


Basic Information

Item Value
gene id atp5mpl
gene name cssa15h14orf2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26889795 ~ 26891532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612181.2
ATCTGTATGTGCATTCTACTATTTCTCTGTTTGCTGCAAAAGAAGAAAACTGATATCCCAGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA
>XM_021612182.2
AAGAAAACTGATATCCCAGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGGCGTCTCACCTCCCACGTACTACAAGCTAGCCAGCTGTAGTGGTACTGCTAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA
>TU786859
GCAAAAGAAGAAAACTGATATCCCAGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA
>TU786858
AGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA
>TU786860
AGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGGCGTCTCACCTCCCACGTACTACAAGCTAGCCAGCTGTAGTGGTACTGCTAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA

Function

NR:

description
PREDICTED: 6.8 kDa mitochondrial proteolipid

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612181.2 False 443 mRNA 0.45 4 26889795 26891532
XM_021612182.2 False 454 mRNA 0.47 5 26889837 26891532
TU786859 False 408 lncRNA 0.46 4 26889830 26891532
TU786858 False 384 lncRNA 0.47 4 26889854 26891532
TU786860 True 437 lncRNA 0.48 5 26889854 26891532

Neighbor

gene id symbol gene type direction distance location
si:ch211-212g7.6 LOC106571509 coding upstream 21679 26845680 ~ 26868116 (+)
LOC110529717 LOC106571508 coding upstream 54390 26799590 ~ 26835405 (+)
ppm1ab LOC106571506 coding upstream 132753 26747124 ~ 26758023 (+)
kcnh5a LOC106571504 coding upstream 155021 26613608 ~ 26734774 (+)
LOC110529712 LOC106571498 coding upstream 298837 26466178 ~ 26590958 (+)
ppp1r13bb ppp1r13b coding downstream 25137 26916669 ~ 26997843 (+)
LOC110529722 LOC106571714 coding downstream 119627 27011159 ~ 27244178 (+)
nudt14 LOC106571713 coding downstream 500185 27391717 ~ 27483687 (+)
jag2b LOC106571712 coding downstream 606629 27498161 ~ 27602164 (+)
btbd6b LOC106571711 coding downstream 1018173 27909705 ~ 27914563 (+)
G691111 NA non-coding upstream 891 26888588 ~ 26888904 (+)
G690627 NA non-coding upstream 179378 26710210 ~ 26710417 (+)
G690619 NA non-coding upstream 187781 26701776 ~ 26702014 (+)
G690606 NA non-coding upstream 199916 26689644 ~ 26689879 (+)
G691113 NA non-coding downstream 3918 26895450 ~ 26895702 (+)
G691116 NA non-coding downstream 6088 26897620 ~ 26897850 (+)
G691119 NA non-coding downstream 11093 26902625 ~ 26902882 (+)
G691122 NA non-coding downstream 17549 26909081 ~ 26909481 (+)
G691278 NA non-coding downstream 395956 27287488 ~ 27287996 (+)
LOC110529706 LOC106571495 other upstream 506369 26381097 ~ 26393547 (+)
LOC110529702 LOC106607944 other upstream 694251 26133191 ~ 26195544 (+)
LOC110529690 LOC106571476 other upstream 1208068 25678604 ~ 25685894 (+)
G688823 NA other upstream 1828345 25058953 ~ 25061450 (+)
G688613 NA other upstream 1904969 24982729 ~ 24984826 (+)
G692343 LOC106571710 other downstream 1004169 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1078944 27951635 ~ 27972016 (+)
G692424 NA other downstream 1178368 28069900 ~ 28070228 (+)
btbd7 btbd7 other downstream 1603753 28495104 ~ 28605625 (+)

Expression


Co-expression Network