LOC110529723


Basic Information

Item Value
gene id LOC110529723
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27170938 ~ 27186859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474429.2
CTGACCCTTTACAGGAATAGCTCGCCGCAAGATTAGAATGTGAGTCAGCGCTAAGGCTGACATGGTCCCGAAAAGAGTATATAAGAAGAATGCCTTCATTAAGAGGGCATGATAGATCTACTTGACTTATCACTGACAGGCAGCTCGTGATATTTAAACCTATCATCACCCCAAAAGGTAATATCTGACTTTCATACTCTAGAACAATTGTAACTTGTGATTTCTGGATTTTGTAAAGAGACGAACAGAGACAACTACCCTGTACACTCCCATTGCTTAATATATCCACTCCGTAACTGGAGTAGATACACAGCATCGGTGGTGTTACGAAGGGTCTTGATCTCGACACAGCCTTTTAACAAGATTCAGCGAATCATAGTACAAACTTCTAGTAGGAGGAACAGATACTGAGTGATTGGATAAAACCTCTAGAGAAATTGTGAGTTGAAGAACATACTCTTTGGGAACCAACCAGGTCAGCTAAGGGCCTTGTCCACCTGAGTCTGACTGACAGGTCTCTGCcactccctcagcctctctctcagccccgCAGCCCAGCTGAGCACCCGTCGCAGTCGCTTCTCTCTTTCTGCGCAGATGCGGAACATCTCCTCAGCCTGGTGCACCTGCAAACCGTAGCTTCCCTTCTAGGAGGAGCCAGCTTAAGTTGAGGGCACCCATTCGCTCGGCAAAGAGTGTGCGCTCCTCAGAGCAGCTGACAGAGTTATCCGATGCTGCCACTGACTGCGGTCCGGACTGGCACAGGAAATCCAGGTATTGGATTATGTGTCTGAGCTGATCTGCGTCATGGCAGGCTATGATGGTGGCCTGTCCCTGATCTTCCAGCCTGGCTTCTTTGTCCTTCACCCACGCCTCCAGGCCTGACAAT
>XR_002474430.2
CTGACCCTTTACAGGAATAGCTCGCCGCAAGATTAGAATGTGAGTCAGCGCTAAGGCTGACATGGTCCCGAAAAGAGTATATAAGAAGAATGCCTTCATTAAGAGGGCATGATAGATCTACTTGACTTATCACTGACAGGCAGCTCGTGATATTTAAACCTATCATCACCCCAAAAGGTAATATCTGACTTTCATACTCTAGAACAATTGTAACTTGTGATTTCTGGATTTTGTAAAGAGACGAACAGAGACAACTACCCTGTACACTCCCATTGCTTAATATATCCACTCCGTAACTGGAGTAGATACACAGCATCGGTGGTGTTACGAAGGGTCTTGATCTCGACACAGCCTTTTAACAAGATTCAGCGAATCATAGTACAAACTTCTAGTAGGAGGAACAGATACTGAGTGATTGGATAAAACCTCTAGAGAAATTGTGAGTTGAAGAACATACTCTTTGGGAACCAACCAGGTCAGCTAAGGGCCTTGTCCACCTGAGTCTGACTGACAGGTCTCTGCcactccctcagcctctctctcagccccgCAGCCCAGCTGAGCACCCGTCGCAGTCGCTTCTCTCTTTCTGCGCAGATGCGGAACATCTCCTCAGCCTGGTGCACCTGCAAACCGTAGGAGGAGCCAGCTTAAGTTGAGGGCACCCATTCGCTCGGCAAAGAGTGTGCGCTCCTCAGAGCAGCTGACAGAGTTATCCGATGCTGCCACTGACTGCGGTCCGGACTGGCACAGGAAATCCAGGTATTGGATTATGTGTCTGAGCTGATCTGCGTCATGGCAGGCTATGATGGTGGCCTGTCCCTGATCTTCCAGCCTGGCTTCTTTGTCCTTCACCCACGCCTCCAGGCCTGACAAT

Function

NR:

description
nesprin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474429.2 False 889 mRNA 0.49 4 27170938 27186859
XR_002474430.2 True 877 mRNA 0.49 4 27170938 27186859

Neighbor

gene id symbol gene type direction distance location
LOC110529714 LOC106571503 coding downstream 568004 26599030 ~ 26602934 (-)
LOC110529713 l3hypdh coding downstream 574200 26591530 ~ 26596738 (-)
LOC110529710 LOC106571501 coding downstream 707577 26444117 ~ 26463361 (-)
cenpw LOC106571497 coding downstream 740050 26428702 ~ 26430888 (-)
LOC110529708 LOC106571496 coding downstream 744864 26422495 ~ 26426074 (-)
esr2a erb1 coding upstream 57700 27244559 ~ 27284491 (-)
LOC110529724 NA coding upstream 100256 27287115 ~ 27308032 (-)
LOC110529221 NA coding upstream 428141 27615000 ~ 27616094 (-)
brf1b LOC106571710 coding upstream 637291 27824150 ~ 27951450 (-)
LOC110529732 LOC106571705 coding upstream 824938 28011797 ~ 28023925 (-)
G691520 NA non-coding downstream 173105 26995283 ~ 26997833 (-)
G691505 NA non-coding downstream 218392 26950717 ~ 26952546 (-)
G691479 NA non-coding downstream 261045 26908013 ~ 26909893 (-)
G691473 NA non-coding downstream 268252 26902457 ~ 26902686 (-)
G691471 NA non-coding downstream 271549 26899142 ~ 26899389 (-)
G691742 NA non-coding upstream 110784 27297643 ~ 27298144 (-)
G691749 NA non-coding upstream 132554 27319413 ~ 27319655 (-)
G691755 NA non-coding upstream 141959 27328818 ~ 27329410 (-)
G691807 NA non-coding upstream 221672 27408531 ~ 27410226 (-)
G691826 LOC106571713 non-coding upstream 290921 27477780 ~ 27483669 (-)
G691447 LOC106571509 other downstream 302860 26864210 ~ 26868078 (-)
G690073 NA other downstream 1179795 25990678 ~ 25991143 (-)
G690033 NA other downstream 1205445 25965179 ~ 25965493 (-)
LOC110529694 LOC106571481 other downstream 1365463 25801320 ~ 25805570 (-)
G691747 NA other upstream 128709 27315568 ~ 27315935 (-)
G692859 NA other upstream 928877 28115736 ~ 28116048 (-)
si:dkey-85n7.8 NA other upstream 1291958 28478817 ~ 28481944 (-)
G693383 btbd7 other upstream 1406482 28593341 ~ 28594431 (-)
G693665 NA other upstream 1771536 28958395 ~ 28958832 (-)

Expression


Co-expression Network