xrcc3 (xrcc3)


Basic Information

Item Value
gene id xrcc3
gene name xrcc3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27951635 ~ 27972016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985220.1
TTCCTTCCATCACTAATCCGGGTGCGACGCGCTCTGTGATGACGATTGGTGGGCGGGTATTTCGCGCGCCAATCCTCCAGTGTTTTTGTTACCACAATAGTTAACCAGCATGCCGTTCACATTTTGCTTGCTGATGCCTCACAGAATGGAGAAATGTATCCCAGACTAAATGCTAATGTGAAATCAGCGAGGGAGATTCTCAGTCTCTCGGGTCCGGATCTACAACGACTCACCCACCTGTCAAAGTCAGACGTGCAACACCTGCACACAGCTGTTGCTGTCTCTTACCGCAGACATTCACCTGTAACAGCCTTACAAGTGCACCGTGGAGAGTGTCCCTCTTTGGAACCTGGACACAAGCTAAGTTTGGCTTGCCCTGTTCTGGACGCTCTACTGCGAGGTGGTATACCGTTGAGCGGCATCACAGAACTGGCAGGGGAGAGCAGTGCAGGAAAGACCCAGTTTGGCTTGCAGCTGTGTCTTTCTGTGCAGTACCCACTGGCGTATGGAGGGCTCAATTCAGGAGCTGTGTATATTTGCACAGAAGACTCGTTTCCCATCAAGCGTCTGCGGCAGCTCATTACCCAGCAGGCTCGGCTGCGGCCAGAGCTTCCCCATGCCCTGATACAGAGCATCCGTTTCAGCGACAACATCTATATAGAGCATGCTGCCGATCTGGGTGCACTGCAGGCCTGCGTGTCCCAGCGGGTGCCCATTCTGCTCTCCCGGGGCCTTGTTCGGCTGGTGGTGGTGGACTCGGTGGCGGCTCTGTTCCGCAGCGAGTTCCAGGCGGACGAGGGTATCGAGAGAGCCCGCCACATGCTGGCCTTTGCCGCCACTCTCCACCGCCTGAGTCACAACTACAGTACCCCGGTGCTGTGCATCAACCAGGTGACAGATGTAATGGATGGGCCAGATCCAGCACACTGTAACTTTGGGTTGGTGGACAATAAGGTGCTGCCCGCCCTGGGCATGGCCTGGGCCAACCAGGTGATGGTGAGGCTGATGCTGCTCCGCCTCCCGGGCTGTGTGGGCACCGGGGAGCAGGGCGGTACCAGCGCCCCTCGCAGGCTGGAGGTGGTGTTTGCCCCCCACCTCCCCAGAGCCAGCTGCCTGTGTGGGGTGTGGGAGGAAGGAGTGAGAGGGCTGCCAAACAGACCCCGGTCTGTCACCAACAGCGTTACCAAGAGACTTGAAACCACAGGCGAATTGGGCCTGAACGATGGTACCTAAATCCGATTAAACTTTTACAGTTATAGGATACAAGGAAAAAAGTGCCAAATTGGAAAATGATAGGGACCCGCACACTGTTTAGATGCTCTGCAGTTTTCTTGGCAATATTGTAACCACAAAGGCATTTTTTGTATCAGGTGATTCAAGGGTGATTCCAGCAGGGAATGCACACTGGAGGAGAGTGGACACTGCAGGATGGCAGGACTGTTGCCTTACTTTGTGCTTCGACATTCCATAGTGAAGCCTATATGCATTtaaaaggagagagaagatagtAGAAAAAGTATGAaagtattatgtgtcaaATGATATGGAAATCCTGACAAaccacctttaaaaaaaaatcaaaatacatttttagcaGCAGACattttctgcttttcttttcaCAACAGAATGTAATATAGGCtattgcaaaaatatatatatattttgcactACACTTCTGAAGTTTCATTTTGCATAGCAGCGTGTTCCTGTTGGAGGAAGCTGACATTTGATTTAGAAATCGGCAGGCCTGTGGTGTATGCCAATTAGTACTGACAACAGCACATCCTAGCAACAGCACTGACGGTTTCTAAATAGTGTAATTTCACTCCAACCAGGACATGCTGCTCTGCAAGTCAAATGCACTTCTGAAAACAGTGCAGAAAACTATCTGCAACGATTGAATTCTGGCCAAAGTCTTTTATTTGTTTCACATGTTAGAGGATGTTCtatccagtgatgtagtggtaaataAAATTGGTGGGTAAAGCTAA
>XM_036985219.1
GATTGGTGGGCGGGTATTTCGCGCGCCAATCCTCCAGTGTTTTTGTTACCACAATAGTTAACCAGCATGCCGTTCACATTTTGCTTGCTGATGCCTCACAGAATGGAGAAATGTATCCCAGACTAAATGGTATGTATGGGAAATATGGATTGGGAACAATTGGAGCTCAACCCAAGGATTATAGCAGCCGTAAAGAAAGCTAATGTGAAATCAGCGAGGGAGATTCTCAGTCTCTCGGGTCCGGATCTACAACGACTCACCCACCTGTCAAAGTCAGACGTGCAACACCTGCACACAGCTGTTGCTGTCTCTTACCGCAGACATTCACCTGTAACAGCCTTACAAGTGCACCGTGGAGAGTGTCCCTCTTTGGAACCTGGACACAAGCTAAGTTTGGCTTGCCCTGTTCTGGACGCTCTACTGCGAGGTGGTATACCGTTGAGCGGCATCACAGAACTGGCAGGGGAGAGCAGTGCAGGAAAGACCCAGTTTGGCTTGCAGCTGTGTCTTTCTGTGCAGTACCCACTGGCGTATGGAGGGCTCAATTCAGGAGCTGTGTATATTTGCACAGAAGACTCGTTTCCCATCAAGCGTCTGCGGCAGCTCATTACCCAGCAGGCTCGGCTGCGGCCAGAGCTTCCCCATGCCCTGATACAGAGCATCCGTTTCAGCGACAACATCTATATAGAGCATGCTGCCGATCTGGGTGCACTGCAGGCCTGCGTGTCCCAGCGGGTGCCCATTCTGCTCTCCCGGGGCCTTGTTCGGCTGGTGGTGGTGGACTCGGTGGCGGCTCTGTTCCGCAGCGAGTTCCAGGCGGACGAGGGTATCGAGAGAGCCCGCCACATGCTGGCCTTTGCCGCCACTCTCCACCGCCTGAGTCACAACTACAGTACCCCGGTGCTGTGCATCAACCAGGTGACAGATGTAATGGATGGGCCAGATCCAGCACACTGTAACTTTGGGTTGGTGGACAATAAGGTGCTGCCCGCCCTGGGCATGGCCTGGGCCAACCAGGTGATGGTGAGGCTGATGCTGCTCCGCCTCCCGGGCTGTGTGGGCACCGGGGAGCAGGGCGGTACCAGCGCCCCTCGCAGGCTGGAGGTGGTGTTTGCCCCCCACCTCCCCAGAGCCAGCTGCCTGTGTGGGGTGTGGGAGGAAGGAGTGAGAGGGCTGCCAAACAGACCCCGGTCTGTCACCAACAGCGTTACCAAGAGACTTGAAACCACAGGCGAATTGGGCCTGAACGATGGTACCTAAATCCGATTAAACTTTTACAGTTATAGGATACAAGGAAAAAAGTGCCAAATTGGAAAATGATAGGGACCCGCACACTGTTTAGATGCTCTGCAGTTTTCTTGGCAATATTGTAACCACAAAGGCATTTTTTGTATCAGGTGATTCAAGGGTGATTCCAGCAGGGAATGCACACTGGAGGAGAGTGGACACTGCAGGATGGCAGGACTGTTGCCTTACTTTGTGCTTCGACATTCCATAGTGAAGCCTATATGCATTtaaaaggagagagaagatagtAGAAAAAGTATGAaagtattatgtgtcaaATGATATGGAAATCCTGACAAaccacctttaaaaaaaaatcaaaatacatttttagcaGCAGACattttctgcttttcttttcaCAACAGAATGTAATATAGGCtattgcaaaaatatatatatattttgcactACACTTCTGAAGTTTCATTTTGCATAGCAGCGTGTTCCTGTTGGAGGAAGCTGACATTTGATTTAGAAATCGGCAGGCCTGTGGTGTATGCCAATTAGTACTGACAACAGCACATCCTAGCAACAGCACTGACGGTTTCTAAATAGTGTAATTTCACTCCAACCAGGACATGCTGCTCTGCAAGTCAAATGCACTTCTGAAAACAGTGCAGAAAACTATCTGCAACGATTGAATTCTGGCCAAAGTCTTTTATTTGTTTCACATGTTAGAGGATGTTCtatccagtgatgtagtggtaaataAAATTGGTGGGTAAAGCTAA
>TU788158
GGCtattgcaaaaatatatatatattttgcactACACTTCTGAAGTTTCATTTTGCATAGCAGCGTGTTCCTGTTGGAGGAAGCTGACATTTGATTTAGAAATCGGCAGGCCTGTGGTGTATGCCAATTAGTACTGACAACAGCACATCCTAGCAACAGCACTGACGGTTTCTAAATAGTGTAATTTCACTCCAACCAGGACATGCTGCTCTGCAAGTCAAATGCACTTCTGAAAACAGTGCAGAAAACTATCTGCAACGATTGAATTCTGGCCAAAGTCTTTTATTTGTTTCACATGTTAGAGGATGTTCtatccagtgatgtagtggtaaataAAATTGGTGGGTAAAGCTAATTGCCATTGGTGGTGAATGAAGTAACGCTTTTTATACTTTCAGTGCATTTTTCCCTAATAGCTGGCTAAACACTCGCAGTGCATTTTTCCCTAATAGCTGGGTAAACACTCGCACAAAAAGAGTAAATGGCATTTACGTGCATTTACTTTAGAcggctcggtgcattcaacaccTCTCAAATACAAGCAGTACTTTGAGCCaggagagatTGACACGCATATTCGTAATATcagctctgtgtacatccaagggccaatCGTGCTGCCCCGTTCtgaaccaattgcaattttcctaagtactttttttgtggcacctgaccactaCTGAACCGTAGTCCAAGTGCGAcaaaaccagggactgtaggacctgccttgttgacagtgctgtcaagaaggtagagcagcgcctTATCATGGGCatacttctccccattttagctactgttgtatcagtaTGTTTGACTATGACAGTttttacaatccagggtaactccaagtagtttagtcacctcaacttgctcaatttccatatgatttattacaagatttagttgaggtttagggtttggtgaatgatttgtcccaaatacaatgcttttagttttagaaatatttaggactaacttagtccttgccacccactctgaaactaactgcaactcttcaaatgttgcagtcatttcagtcgctgtagtagctgacatgtatagtgttgagtcctTTGCACACATAAACACTCTGGCTttcctcaaagccagtggcaattcattagtaaagattgaaaaaagtaatgggccaagagagctgccctggggaaatcctgattctacctggattatgttggagaggcttatattaaagaacaccctctgtgttctgttagtcgggtaactctttatccacaatgtgcatgtgtgtgtacggcTTTGTGTCTTTgtatgtcactgtgtgtgtcctGCAAAAGTCATTTTTACATATTTCTGCAGACGTACTTTTAAATGGATAGTCATTGGCTCAATAACCggaagtctatgggaacagctagcatATCATTGTGCAGGCACTAGCAGCAATAGAACCCCC

Function

symbol description
xrcc3 Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to four-way junction DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in breast cancer; familial melanoma; and pancreatic cancer. Orthologous to human XRCC3 (X-ray repair cross complementing 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985220.1 False 1994 mRNA 0.50 8 27951635 27970830
XM_036985219.1 False 2021 mRNA 0.50 8 27951678 27970830
TU788158 True 1438 TUCP 0.41 2 27970476 27972016

Neighbor

gene id symbol gene type direction distance location
LOC110529728 LOC106571709 coding upstream 3584 27931501 ~ 27948051 (+)
btbd6b LOC106571711 coding upstream 37072 27909705 ~ 27914563 (+)
jag2b LOC106571712 coding upstream 349471 27498161 ~ 27602164 (+)
nudt14 LOC106571713 coding upstream 467948 27391717 ~ 27483687 (+)
LOC110529722 LOC106571714 coding upstream 707457 27011159 ~ 27244178 (+)
LOC110529731 klc1 coding downstream 5913 27976743 ~ 28000906 (+)
serpina10a LOC106571703 coding downstream 61571 28032401 ~ 28050434 (+)
asb2a.2 LOC106571697 coding downstream 245370 28216200 ~ 28224790 (+)
LOC110529736 LOC106571696 coding downstream 265823 28236653 ~ 28266785 (+)
LOC110529737 NA coding downstream 311420 28282250 ~ 28295030 (+)
G692367 NA non-coding upstream 22163 27929266 ~ 27929472 (+)
G692364 NA non-coding upstream 26621 27924786 ~ 27925014 (+)
G692363 NA non-coding upstream 27139 27924296 ~ 27924496 (+)
G692361 NA non-coding upstream 29233 27922055 ~ 27922402 (+)
G692333 NA non-coding downstream 1695 27972525 ~ 27973844 (+)
G692381 ppp4r4 non-coding downstream 27226 27998056 ~ 28068929 (+)
G692422 NA non-coding downstream 98178 28069008 ~ 28069294 (+)
G692464 NA non-coding downstream 151747 28122577 ~ 28123405 (+)
G692465 NA non-coding downstream 152698 28123528 ~ 28123934 (+)
G692343 LOC106571710 other upstream 55648 27895701 ~ 27895987 (+)
LOC110529706 LOC106571495 other upstream 1568209 26381097 ~ 26393547 (+)
LOC110529702 LOC106607944 other upstream 1756091 26133191 ~ 26195544 (+)
LOC110529690 LOC106571476 other upstream 2269908 25678604 ~ 25685894 (+)
G692424 NA other downstream 99070 28069900 ~ 28070228 (+)
btbd7 btbd7 other downstream 524455 28495104 ~ 28605625 (+)
G693207 NA other downstream 734020 28704850 ~ 28705752 (+)
cdca4 LOC106571684 other downstream 959930 28930668 ~ 28939888 (+)
G694036 NA other downstream 1820167 29790997 ~ 29792747 (+)

Expression


Co-expression Network