LOC110529737


Basic Information

Item Value
gene id LOC110529737
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28282250 ~ 28295030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474434.2
agtgcCCTCTGTCCCTCTTAAAAAAACTAGGCCAGCTCCCCCTCAGGAGCAATCTGAGCCACGAGGGGGGAAGAGAAAAAGTTGGCCCACCACCCTGGGAATATCATGTGAAGCATCCAGAAATATCCTAGATGGCTAGAGCAGAATCCCAGGCTCAGAAACCTCCactgacagaggaggggagaagactTAGTGGAGGAGAGCGCGACTAACCAGAGAGGAAAACTTTTGCCTTTGGATAACTAAGAATTACGGGGAAAGaTCCAATATGGCAGTTGCCAGCATGTCCATGCCTGGCTCCACAACCAACCTAGACTCAGATGttacatagtaaatgtaaatctgtctctctccatttagTCATTACAACGTAGCTATAGCCAATATGACATATGGGCAACAATTGCCAGTCACGGTATGTTCAAGAAAATATTATTATAGGGCTTGAGGAAGAACATGTGCCACTATACAGACATCTCCATCAATTTAAATATACAGTTGCgttcaaaatgattggcaccctcgataaagatgagcagaaaagactgtataaaataaataataagaatactgagc
>TU788408
CCAGGCTCAGAAACCTCCactgacagaggaggggagaagactTAGTGGAGGAGAGCGCGACTAACCAGAGAGGAAAACTTTTGCCTTTGGATAACTAAGAATTACGGGGAAAGaTCCAATATGGCAGTTGCCAGCATGTCCATGCCTGGCTCCACAACCAACCTAGACTCAGATGttacatagtaaatgtaaatctgtctctctccatttagTCATTACAACGTAGCTATAGCCAATATGACATATGGGCAACAATTGCCAGTCACGGTATGTTCAAGAAAATATTATTATAGGGCTTGAGGAAGAACATGTGCCACTATACAGACATCTCCATCAATTTAAATATACAGTTGCgttcaaaatgattggcaccctcgataaagatgagcagaaaagactgtata
>TU788409
CCAGGCTCAGAAACCTCCactgacagaggaggggagaagactTAGTGGAGGAGAGCGCGACTAACCAGAGAGGAAAACTTTTGCCTTTGGATAACTAAGAATTACGGGGAAAGaTCCAATATGGCAGTTGCCAGCATGTCCATGCCTGGCTCCACAACCAACCTAGACTCAGATGttacatagtaaatgtaaatctgtctctctccatttagTCATTACAACGTAGCTATAGCCAATATGACATATGGGCAACAATTGCCAGTCACGgtggcgtagcgggcagcggttgtgagttgatgggagtaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474434.2 False 576 mRNA 0.44 2 28282250 28283104
TU788408 False 404 lncRNA 0.42 2 28282398 28283080
TU788409 True 308 lncRNA 0.47 3 28282398 28295030

Neighbor

gene id symbol gene type direction distance location
LOC110529736 LOC106571696 coding upstream 15465 28236653 ~ 28266785 (+)
asb2a.2 LOC106571697 coding upstream 57460 28216200 ~ 28224790 (+)
serpina10a LOC106571703 coding upstream 231816 28032401 ~ 28050434 (+)
LOC110529731 klc1 coding upstream 281344 27976743 ~ 28000906 (+)
xrcc3 xrcc3 coding upstream 311420 27951635 ~ 27972016 (+)
LOC110529738 LOC106571695 coding downstream 18264 28301368 ~ 28314736 (+)
btbd7 btbd7 coding downstream 212000 28495104 ~ 28605625 (+)
si:dkeyp-55f12.3 NA coding downstream 340430 28623534 ~ 28625610 (+)
itpk1a itpk1 coding downstream 349980 28633084 ~ 28696724 (+)
LOC110531084 LOC106571688 coding downstream 521626 28804730 ~ 28806416 (+)
G692486 NA non-coding upstream 126060 28155967 ~ 28156190 (+)
G692480 NA non-coding upstream 131209 28150839 ~ 28151041 (+)
G692465 NA non-coding upstream 158316 28123528 ~ 28123934 (+)
G692464 NA non-coding upstream 158845 28122577 ~ 28123405 (+)
G692422 NA non-coding upstream 212956 28069008 ~ 28069294 (+)
G692608 NA non-coding downstream 63676 28346780 ~ 28347075 (+)
G693082 NA non-coding downstream 181197 28464301 ~ 28464837 (+)
G693206 NA non-coding downstream 429307 28712411 ~ 28718652 (+)
G693216 NA non-coding downstream 444036 28727140 ~ 28735356 (+)
G693256 NA non-coding downstream 497502 28780606 ~ 28780882 (+)
G692424 NA other upstream 212022 28069900 ~ 28070228 (+)
G692343 LOC106571710 other upstream 386263 27895701 ~ 27895987 (+)
jag2b LOC106571712 other upstream 725231 27498161 ~ 27602164 (+)
LOC110529706 LOC106571495 other upstream 1898824 26381097 ~ 26393547 (+)
G693207 NA other downstream 421746 28704850 ~ 28705752 (+)
cdca4 LOC106571684 other downstream 647656 28930668 ~ 28939888 (+)
G694036 NA other downstream 1507893 29790997 ~ 29792747 (+)
G699605 NA other downstream 5844489 34127593 ~ 34128301 (+)

Expression


Co-expression Network