prima1 (prima1)


Basic Information

Item Value
gene id prima1
gene name prima1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28326936 ~ 28388304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612212.2
GTATATTCTTCATTTAACATATCTATCTGTTTCGCTCAAAtcgctgaatgtgtgtgtgtgtgtgtgtgtgtttgctgactGAAATTACGCTGTGACTTACCCAAGCAATTGTTGATGCCCATCATTACAGGCGGAGTTGATATTGATACTCGCGCACCGTCGCTCTTCTCTACACAGTTATTTTTAACATGTTCAGTGACACTTTGCAGAGAGTGAATGTGCATTGATTTGATGATAATGCATTAGAGCCGTTATAGGCAGAATTGTTGCTTTTTCACCACCGAATTTCGCGCGGGACCAATGTTGCACGTATTTTTCCTAATGCGCTTTAACCCAAGTGTAGCCTATGTGTACAGGCAATGTTCACTCTCAGGCTTCTGAAGATGCCTCCGCAATTTTTGCCTCAATAAACCAAGACATATTACCAACAGCCGCGTAGCTCACTCAGTACACATGTACACGGAATTATAAATTATAGGGATAGGCGGTGTGCGCTTATTCTCAGCATGTCTAACTTTCGTGGCTCATCCCTGGCCGTCATTCGAGTTAAATGCAAGGGCAGGGATGACTCCCAAACTGCGACTACCACCTAAAACATCACGGCCCGCTGATTTTATATTGGAGAACTTTGGACTTTTCAGCTGTGGATACCAACCAAAAAGCGCTGCACATTTGCGCGGTGATTCCAACTTTCTAGAGAGGCCTAATTAAATTAACTAGGTTTGTGGATGCAGGACGGATGGTTGTTCAAGCTCTCTCATGCCACCAACAATTGTGGAAACAGGGCAAGAATGTGGCAGAATCACTTTTTTGGAAACGTCCAACAGAGATTTCGTTGTCGAGTCGACACTGGATTAAGTTCTTGAAAATAGACGAGTGTTATGCGTCTCATGCTTGTTTCCTTTACACGAGGGCTGTGAGAGCGAAGGAGGAATGCTTGTCCGAGAGATATTGCTGCTCATTTTAGGTTTTTCGCATTTTGTTTTTGGTCACTGCTTTCTAACGTCGTTTTTACTTTTTTTCCAGTTCACTCAGGGAGAGCCCCAGAGTTCATGTGCGCGGAACGTTGCAGAGAGGGCGGGTGAGAGCTGCCAGCTGGCGTGCCAATGTAGACCCTACCCTCCCCTGCCACCCCCGCCcccacctcctccaccccccaGACTTCTGGTCTTCACTGTGGCTCCCTCCACAGTGCCTCCCATGAAGCCGTGGTGGAAGGAGATCGTGGTGTTGGGGACAGTGGGCTGTGCCTCGGTTGCCTTCCTCCTGTTGATGGTCATCATCTGCTATAAGGCCATAAAGAGGAAACCCCTACGGAAGGAGGAGAATGGAACAAGCCGAGGGGAGTACGCCATGAGCTCGCGCAGCAAGAAGACGGTGGACACCAACAACACAGGGGTGTAGGAAGTGCCCAGATAGAAGGATCACGGCAACCACAACCCCAAACCACTAGAAATGACAAGAAGCCCTCCTTGACTTTGAGAAGGCAGGGGGGCTGGTAGGAGGGAGAGTATGAACTTGCAACCCAACAGCAAATCATGCTTCAGACCATTGTGGGACCATATGAAAGAGAGCTTGGCCGTAGGTCTGTGAAAGAGAATAGCATTGATAAATATATTAATCCGGGTTTGGAACTCAGTAGCTGACTCCTTCACACGCAGGGCTTGAGGGCTTAACACTGGAAGCCTTAACGGGATGGCTCGTCTAGTGTGGACTCGATGTCTAGCGGGCACTCGATAACAGCTGCCAGCACATTGGCCAAATCTGTAAGTCCATACATCACCTTGGAGACCCCTAAGTGGACAGAAGCGACACGAAATACAGAGGATAAAAAATCGCATGCACTTTCTGTTGAATGCAATgatttctgtctttctctttctgcaCTTCCCGCAACCCTCCACGTTTCATTGTCTTGTCCCcccccttccccttcctctcctgcCTCTGAAGGTTCCTTGATGACGCCTTTTGTTAATTGACATTCTACTTGAAACACAAAATCATGTTGATGGACAAGGATTGCAGTGGTCTGTACACCAAAATATGACAAAAGAAGAACTGTCATCGTGAAGAGTTCAATGTATTGCTTTTGGTCTCTGACTATGCAATTTGAAAGGATATGAGATATGTTCCCAAGGGTTGTTTCCTTATTATGAAAATAGGGCATGAGAGTATCCAATGCCGACCAGTTATGAATCCTGTTTAGTGCTTTCCGACGCAGATCTGCATTTGAATTTCTGTAGTATGTGTACTACAATGTGTATTAATCAATGAGAGAACTCAGCCCATAGAAATACACATATGTGACTCAAAGAGTTTTTACAGGGGCTATATTCAGTGTGGATTTAGCAAAATTACATCATGATGCACAGCGGAGCAACTTCCTGCTTACAGAAATGTGGGCATGCCTCAAGAGGGGGCTCAAATTGGGAAGAGCCAATAGCGGCAGTCTTTCAAGTTTGTTCATTTGTTATTGCCCCGCTGTGTATGATGATACAatattgctgagtctacctttaagaaAGGTATAATtaacctttttatttttatttgtaagtATATGTTTCCCCAAAAAATGCATTCCAAAATTGCATTCTGTACTCTTTTGTCAAAGTCTCTATTGTAAAGTTTGGCTCCAGGATTCAGTCTTCTGGATTTGGGTTAATGACCTACACCTTAAATGCACTGAAAACTTTGGATGTTAGCATTGCCTATGGGCTTTCCACCCTTAACAAAGCCAGGGTTCAGCATTTCATTAATGGCTAACCTGCAGTTTCTACCCTAATAGTCTACTGGATACATATCTAAAAGACAGTTGTAAAATTACTGCGCAGGAGGGGCGCTCCAAAATAAGGGAGGGGTGTGCTTTGGGGAGGATTGTGTCGATTTTTATTGGGCAAAGGGGAGGGTATTGCATTTTCCCCCTGGTTTATATTTGctgttttgcaggttttcctatatAATTTATTCCATCCTAGCCAACTTTACCCATCTGCTTGCATGGGCCTACCTTATACACTAGCCTATGCCACAGTACCCACATTGGTTGCCGCCGACGGCTCTGGGCTCATATTTGTCACACTCGTACCTTTGATATTTGCCACTCCAAAGGCCACAAAACAACATGTTTTTCAGAATAAGCCAGATTTCGAGTGCTTCCATGAAAGCTTTGTGGTGCAGAAACGTGAAGCGAAAGCCACGGTGTAATCAATCAGGAGGTGGACAGCACATGAGGATGAAATTATGCTAATTGACTAACAACAACAGATCTATGTGTTGAAGCCgatttcttcctatttaagaaatGAAAGGCTATCCATAGATTTGTTGGCCAATTCGTCCAATAGTGTCACCACTCCTTAAATACCTCTGTGTCCGTGAATGGCTTGGTCTGTTAAGTTAAAACCAGTGCTCGAATTGAAGgagtaggcctatgtgaggaTATGCCATAGCCTACTTTCTTGTTAAAGAAACTGGCAAAATCATACCCCTTGTTAGGTTAAGATTTTGAAGAAATTAAAACGGATTCTGCATATATAAAGTGACTTTATAACAATGTTTTTCTCCCCgatgctttatgctagaaacaagctgcAAAATGCCCAGAGACGCAACTCAGATGCATATGGGGAATATCTTTGGTTTGTCTCTGTCATTCAGAGGTTAAGCTATGAAGTTTTATAGCCGagaatataaaaaaaaacattgcttgggaagtaatctaatAGGCCtacaatgtgtaactctgtcgcTACCAATTGAGCTATTCACTTTCTCTAAAAGGGAAGATTTTTAAACCCAGGCAGTTTTTAGGAATGCGCTTGTGACCGTCTCTTGTTGGGTTAAGCCATGGAAGAGCAGCCAGCAGTTAAAGCTTACATTTTTCTGCGTCGGGCTTCTGTCTGGGGTGGCAAGTAGGCTACAATGCTTAGAATCATATAACATCTTAGatttaattatttgcaaacagcGACAGTTTGgttgcaaacaagacacactggTTTAGCATCGGAGAAATGTGGTAAAATTAATACatatctctctgttcattctTCGCTGAAACTTCTATTTTCTAAATCGGCCTTTCTTTTGGGACATTTTGGGAGCGACAGTTTCTCTTGCAACCAAGCGGATTGTTTTGAGGTAATAAAAAGTAGGGTAGGCTGCCTGTTTTTCCCCAATCAGCGCACAGATAAATAGACATAAGCTACAAAACGAATTCACCTAGAGACATTTTGGTCTCTATTCCATCTGTAACGCTGAAGCGTGACAGATCCTGAGACAGATCCTGAGATAGATCCTGAGACAGATCCTGAGACAGATCCTGAGATAGATCCTGAGACAGATCCTGAGATAGATCCTGAGACAGATCCTGAGATAGAAATGTCAAGGTATTTTCCGATTGAGCTGACGAATGCAGAGTTTACCGtgaacattgcctttacatttcaatcacgATGTAAAGCTCAACTTCCACGTTGTAGATTGAGTAGAGCCGTTTATCTACAACAAGTATGTTATTGTCATTGAATTAGTGATGTACTAAACATTTTGTGTTCAAAATGGTGTTCAAAATAGTGTAGGCCTATGAATCGGGCTGCTATTATATTATGTTCTGGCCCGACGACTATTAGCTCAGAAAAAACgatataatttttattttttttagctaATATCTTCAGTCATGTACATTGACTAGAATTGCATGGTATGTGTTTATAAAAGGTACTTTTTTTATCTGACCTGCAAATATGCACCCCCTGATGGTATTTAGGAGGTAGGCCTACTTTATCACTATTACTGTGGTTGTAATCATTATTTTGAGTTAAGTCAATGAAGGGGGAGGGTATTTAATTATTTTCAATtacaaggggagggtcatgtgaaaatatgttttacgTTGGGGAGGGGGGTGCATTTTAAACGTTTTTTTAATGACGTCTCGAGTTGGAACCCCCCCTCCCATGCAGTAATTTTCGAACAGTCCCTAATAGCTACCGCAGTAAATTACTCCACCTACAATATGTCTGGTACTGCATTGTTTTCAAGGTGTGTTTCCTAAAAGCATTGTAGCTAACATGGTTGATTCTCCAAGTCAATGTACCCGATATCATCATGAATTAAATGTCATGCTCAAATCATCCCAAAGTCTCCAAAAGGGATTGTGTAGAAATGTGACTTGGTGAGAAGTCATTGACCTGGTTAGAAGCCATTGCTAATATTGCATTTGATTGGAAAATGCTGTAAGCCGATAGTGGTCAGTAGATGCATAAGCAAACTGATTACGGTTAGGAAGGTTAGGAAACAAacatgtcattttgtaatttggttgTACTATCCCTTTAATCTACGTAAACATTGGGAACATTTTGACGtgtatcctttttttttttttttgccgaaTGATCTGCCTGTGGTTAGATCAAAAAGTGATATTTCTTCTGAAGAGTGATTCTtccaatccccctctctctaagGATACACAGCTTTAGTGGGCTGTAGGGAAGTGGGTCATAATGGGTTAACATGCTGAAATTCAACATACAttaaaatcaaacatttattcaCATCAGAAGAAGAGTAAAATACAATGATAACAGAGCTCATAGATCATCATCTTGCACACAAAGGTAACTGTCTGTATGTCCAAGCTGTCCGTCCTTCTTCATTTCATGCTACAAAAGAAATCATACTGGACACAATCTTTGCATAGTCTATACCTACAGCCCATACAGTCTATACCTACAGTTAACTCCACTACATGAACATAGTGGTGTATTataatgtacaaaataagtatAACAAAAATAGCATGAATGTAAATATCAGTATTTAAGACTTGTCTTCTTGACTGTTTCTCGTGTGTACAGAGTAAATAACATACTGTACGTTTATAGGATAAAATATTAAGAAACAAGATGTTGAAATGCTACCAGTCTGAGTTGAGTCAATGTTGTTGTGTGTCTGGAACAAGCCATTCATGTATATTTGAGTAATTAAAGGTTGTTGCACAATGTATGCATCACATACCAAAacaataaatatatacatatatatattgtgCATTGAACTAATTTAAATTGCAACCTGCTGACTTTTTTTTAGTTTTCAATAAAATTGTACTATTGAATAT

Function

symbol description
prima1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRIMA1 (proline rich membrane anchor 1).

NR:

description
proline-rich membrane anchor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612212.2 True 6136 mRNA 0.41 4 28326936 28388304

Neighbor

gene id symbol gene type direction distance location
ppp4r4 ppp4r4 coding downstream 149262 28050159 ~ 28177674 (-)
LOC110529732 LOC106571705 coding downstream 303011 28011797 ~ 28023925 (-)
brf1b LOC106571710 coding downstream 375486 27824150 ~ 27951450 (-)
LOC110529221 NA coding downstream 710842 27615000 ~ 27616094 (-)
LOC110529724 NA coding downstream 1018904 27287115 ~ 27308032 (-)
si:dkey-85n7.8 NA coding upstream 90513 28478817 ~ 28481944 (-)
ubr7 ubr7 coding upstream 217967 28606271 ~ 28624188 (-)
tmem251 tmem251 coding upstream 237108 28625412 ~ 28635685 (-)
chga chga coding upstream 316545 28704849 ~ 28727911 (-)
LOC110529748 NA coding upstream 348490 28736794 ~ 28766673 (-)
G692926 NA non-coding downstream 98122 28228421 ~ 28228814 (-)
G692909 NA non-coding downstream 130405 28196155 ~ 28196531 (-)
G692879 NA non-coding downstream 175844 28150777 ~ 28151092 (-)
G692864 NA non-coding downstream 202288 28124417 ~ 28124648 (-)
G692856 NA non-coding downstream 216154 28110565 ~ 28110782 (-)
G693085 NA non-coding upstream 77316 28465620 ~ 28465838 (-)
G693390 itpk1 non-coding upstream 245719 28634023 ~ 28665934 (-)
G693468 NA non-coding upstream 379447 28767751 ~ 28768156 (-)
G693471 NA non-coding upstream 381697 28770001 ~ 28770212 (-)
G693488 NA non-coding upstream 396805 28785109 ~ 28785516 (-)
G692859 NA other downstream 210888 28115736 ~ 28116048 (-)
G691747 NA other downstream 1011001 27315568 ~ 27315935 (-)
G691447 LOC106571509 other downstream 1458858 26864210 ~ 26868078 (-)
cenpw LOC106571497 other downstream 1896093 26428702 ~ 26430888 (-)
G690073 NA other downstream 2335793 25990678 ~ 25991143 (-)
G693383 btbd7 other upstream 205037 28593341 ~ 28594431 (-)
G693665 NA other upstream 570091 28958395 ~ 28958832 (-)
G694858 LOC105017690 other upstream 1613459 30001763 ~ 30062168 (-)
G696068 NA other upstream 2458598 30846902 ~ 30847209 (-)

Expression


Co-expression Network