LOC110529751


Basic Information

Item Value
gene id LOC110529751
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28815791 ~ 28825392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474437.2
ttttcagtcccaggatccttagcttagtgatgagcttggagggcactatggtgttgaatgctgagctgtagtcaatgaacagcatttccACATAAGTTTTCCTCTTGTCCATGTgggagagcagtgtggagtgcaatagagattgtgtcatctgtggatctgttgggtcagtatgcgaattggagtgggtccagggtgtctgggatgatggtgttgatgtaagccatgaccagcctttcaagcatttcatggctagagatgtgagtgctacagggtgatagtcatttTGACAGGTAACCTTGGTgttctatggtggtctgcttgaaacatgtaggtattacagactgggagaggttgaaaatgaaaacacttgccagctggtcagcacatgctctgagtacacatcctggtaatctggcTGGCATTCGGCCTTGTGAaggttaacctgtttaaaggtcttactcacatcggctacgaagTGAGTGATCAcacagtgttgcttgcctcaaattAAGcatagcttgtctggtaggctctgATCACAGGGCAGCTTGCGGATGGGTTTCCATTTGTAATCTGTGGtagtttgcaaaccctgccacatccgatgagcatcagagctggtgtagtaggatttgattttagtcctgtattgacactatGCCTGTCTGATGTTTTGTCGGAGGGCTTAGcgtgatttcttataagcgtcgggattagtgtcccactcatTTTGAGTGCTTTTGCCGGGACTAAGGAAATGGCCAGCAAGATGTTCTCCCTCCAGTGCCAATTTTTAAGCAACCTTGAGGAGCACGAAGGAGGGGAGCATAGCTTGAAATGGACTGACCCAAGCCTGCACTATATATGTGTTGTGGTCAGGGGGGGAAGTAGAGGTGAGTGAATGACACTTTCCATCATGTGTTTTCCATCCAGAGGTCATAAACAGTCATGTTATTAACACAAACCTGTACTGTTGTCTTATGTGTTTCATGAAATTAGTGCATCTACTATGTCAGCTCCATCCCACAGACACTCTACAGCCCGCAGCATATCTCACGCAACGTGCAGTCACTCTCCCCCTGCCTGTAGGCCCTCTCCTCCAGCACCCAGTCGCCATCCACCTGCCAGCAGGCCCTCTCCAGCACGCAGGCCCTCTCCCCCTGCCAGCAGGCCCTCTCCAGCACGCAGGCCCTCTCCCCCTGAGGAAGAGGGTGGGGCCATGCGCCTTCTCCGATCAACTCTTCTGCCAGTTATCAGAAGAACTGACCCCACCGTGCACACTGGCAGAGGTGGATGATGAGGAGTTGCGTGCAATCTATATGGGTTTAAAGAGGGTCTAATGACCCTTGGTGTCCTCGATACGTTACAGTCCAGCACCGCCGCAATGAGGAACGAAGAGGAGTTAGTGGTGGGCTTCTGGAAGGACTGGCTGATCGATGTCGAAGaacagccaaaACAGCATCATCACGGACAGCAGAAGTCTTCGCATCGACCATTCTGGAATCACGCCCCGAGAAGACACTTGTTTTTCCTTATGTCTTGAAGATATGTTGTATCATGTGATTACACTAAGAGATGTGCCACTCTCAATGTCATTGTTGTGTCACTAAGATATCCTGGCATTTCCAACCTGTAGTGCGTGATCTTTGAAATCTTAGAAACAGGATATAAAAAAATGAATTTGTTATTCCACAAAGAAATATGGGGTATGTTCAACCCATCATTTTACAATAATGAAGGAGTTCAGCACTGATTATGTCAGTGTGGTTATGTTGACCCATATACCCACACTGCAGACAATAATGTTTTTGCTAGGTCATTTGTCTGCTTGGAGGGGAATATGTCTGCCAAGTGAATGTTGCTAAAGTAAGAAATATTGATGCCGTTTATCTTTAAGGAAGGGAGTCGATCAGTTTATCACCAGCCTCCTGTCCCTACACCCTTTACAGAACTGTTATGTAACGGTCGTAAATTGTTGCATTTAGTCCTTGTTATTGCTAGAAGGGATACATTTGAAGTTTACTGAGTTAGATCAAATGGTACAACGTTTATAATGAATGTAAACCACTATGGAATTTATGCATCTCCACAGAAGTGATATTTCCTTTTGCCGTAGCTCTTTGCCTTGGCTTTTGTTGTTAAGCAGGACAATTTTTAGCTCTGTTGTTGTATCTTTTTGAGGAGTTAAAGTTTGCAAAAGTAAAAAAAGTTGGAACAAACATTGAAGTACTATTACAAAAAGGTAACATGTATGCAGTAAGATGTTTCCTTTGGTTTTTGTTCATACCACAAAAAGGTCACTATTACAGTTGTAATGTTGTAAACCTACTGTAATCCAGTCCTTGTATTTGTACAGAAATACTCAAATTGCATGTTTCACTAGGGACATATAATTGTGCTTGGAAGCCCTGTGAACAACCATTGTAATGCCAGCATACCCAGAGTATTTCAACTAAAGTATGTCAGACCTCAGTTCTTATAAGCATAAGTAATCTAACGTAAAGAGGGATGTTACAACAGTGAGGAATGATATTCAATGCACAAATGTGAAGAGAGCTACATTTCTAGGACATAGCTGAGGGAAGCCAATTCTTTGTCAGATTGGTGCCAGAGCTGACATGTCCACTAATCCCGAGCAGGATCAATCTAATCCCAGAGAATGAGTTCACGCCCTTGACAGAGCACTAGAAAACACACCAACCCTCCTGAATTGTCAGAGTACTGAACAAGGATGCTGTACTGTTATCTTACCACTGTTTCTGCCCCCCCACCTCTAGTTGTCTTTCTCTTCCCTCGGATTccctgtagagaggaggggagggagggagagaggcagcagCTGGCAAATGTAATCCATTCCCATGTTAGGGTCATCGCTGCACTGAGGGTAGCTACGTGTTCTACTGAATGCATCATCCTCCACCCAGGTCACCGCTACATTATCCACTGTATTATGTTTTGCCACTTTACCTTTTACACTTTGACAATCTAtttgatctctttctctccaacTGATGTCTGCTGAGTTCTCTGGCTCTAAATGGTATTACATATTACCCAGGTGGGCGCTACGCATTGGTGGTGAAAACGGAGAGTTTATGCTGCATGCGACGTAAAAGCCCTTTGAGCACCTGGTGAAAGACCCGTATGTAAATCCAGTCCATTATTGACTGAATTTTTAGGAAGTGTAACTCCAAGATGCACTAAAACACCACCACTTGGCCTACCGGTATATTGAGCTAAATTACAGAAAAGCATTTATTTGAATAATTCAGTTTTGTTTAGTGGCTATTATTAGACCATGCTTCTTgaatttctttttcttttttttacagaaaattgCTTCTGAAAGGAAACACTGGCTAAACCTTTTACTGGTGAGAGAATTTCAAAATTGTTGATAAAGGCCTGTGTGTGACTGTCAGATTATTTATGGCAGGGGTACTCAAGTACTATTTAAGAAGGTCCGGTCACACAAATTTCCTAGGTTGCAAAAAGGTGTCAATTATCGGCATAGTAACAACCCCCCCCACCTCACAATTCATGCGACCCGAAACTTCACACCCCTCGTTGGCGAATAAAACATTTTGCAGTTGTAAAGCTAATTTCCGGTAATCGACACATCTGTGTTGATTTGATACCAGGGGTCGAAGCTCTACCGAGTTCAATATTGACCCCGTTCTGGGTCCGCGCTCCGTATTGACCCCGTTCTGGGTCCACACGGGCGGCCAGTTGAGTATGGGTGGGATTTATGGTAGATCTGATttagtttattatttatttatttgtttggaGGCCGCAAAACACTCCGAGGCCCATTCTTTGCCCTCTTTCACGCAACCGAGCAATGCTCGGatgtaaaaaaatacataaaaaaaaagatCCAATACAAATGGATTTACTCCCTTCACAGCAGAAATAAGTGCCTCATTGAATTGTTTTCCAAACAAGGATACTGATTCCTCATCTCATAGAGCATCATTATTTTAATAGGAGCCTTGCTTGGGAGAGATAGTGGTGGAGGAGTTGTTGTGATGGCCAAATATCAACCGAACACGTGCTATGATTAGTACAAGTTTTAATAACTGGCTAGAATAATTTACCAAactaaaaattgttagctgacatgggtaattgagtgactgacacaataaactgctgatgcacaaccacattttgaaCTTGCACCTCGTGTACCATTCTAACTTAACGGTCGGGGCCCCCATAGCATGACATAAAATAATTCTCATGTCCAACAGCTGACTTTACCATTGTCCTTAATAGGGTTGGGTGGATTGGAAATCAATCAGGAATCTAAAAATccttgttggggggg
>TU789139
TGCTTGGGAGAGATAGTGGTGGAGGAGTTGTTGTGATGGCCAAATATCAACCGAACACGTGCTATGATTAGTACAAGTTTTAATAACTGGCTAGAATAATTTACCAAactaaaaattgttagctgacatgggtaattgagtgactgacacaataaactgctgatgcacaaccacattttgaaCTTGCACCTCGTGTACCATTCTAACTTAACGGTCTCATGTCCAACAGCTGACTTTACCATTGTCCTTAATAGGGTTGGGTGGATTGGAAATCAATCAGGAATCTAAAAATccttgttggggggggggggaagaaaaaaaaagtatccCACCAAATCTGTTTCCTAAATTGGTTTCTGTAACAGCTGTATAGTCAGTTATCAATTGCCCAATGTGTTTATAACCTGTTGTCATTATTATGACAGAAAAGTCAAGTCACTATAACcataacatacactgagtgtacaaaacattaagaacaccttaatattgagttgcactctcccttttgcactcagaacagcctcaattcgcttGGCCTCTaaaaaggtgttgaaagcatGCCACAGGGATACTCCCTCACTGTGACAATGTACTAGATGTTAAATGGGGGAATTTTACAGAATCATTTTGAAAAATGCCAATCGGAGTTTTTCCTTTCGGCAACTGACAGACAATGAAGTCCTTGATGTGCTGTTGACATAATACATGAAGAAACATACAGGGGCCGACCATTTGGATCCAGGTCTGCTCAAGTGTACAGCGTCCCTCATTGTGGGCTCAATAACCCACATCTTTAAATGTAACACTTATCAGGAAATCTTCCTAAAGTGTGGAAATCAGCTTATGTGACGCCACTACATAAGGGAGGCGATTGCTGTGATCTTGACAAATTAAAGCCTGAGCTGAGGGAACCAGAAGCTGGAGAAGCAAAGACCTGCTCCATAGGGGAGGGGGTCGGGCCAATAGTCCCACCCCGATTATGACCCTGAGTGGAACCATGTATAACAAAGTCAAATAGTCAGTGCTTTCTCCTAATGAGTCTTGACAAAAAGGCTGTGCATGAAATCTCTTCCTGTTGCAGTTCAACTTACCAAACAGTTTAAAAAGGATTAAAAATGAAACATGGTTCCACAAACTATCAATTACTAGTAGATGGAACAAACGTCAATGCATTCACTCAGGTTTTTTGTGTAAGGGAGCATCTATGGTGGGGATCAGCATTCTATAATATTATCTCAAGGACATTATCTGTATTAGGCTATATGGATAATATCTCAAGAATCAAACTTTATCTGAGACACAGAATCATGCGCTGCAATGAGGAAGGAAATGGGGTTGCTAGTGAAGGGGTAGCAAAGGATTCTCTATCCTTCATTCTGATCCTTGACCATACCAAAGCAGAGCTGAAATGACTGACAACAATATCTTTCATTACTTGGTCCACTCAAACAAGTAAGTTGACCAAAGTTCAGCTACGTACTGAAAGATTTTGAACTGGATGTCAAATAAATGAGCACGTTTATGTTTACTTCATTAGTTCAACATTTGTGCTAACTAAGGATATTCGCTAACAAAATAAGTTGCTGAAGAAAACGTCTGCATTGAAACAACTCATGTTCGCTAAGGAAATATTTGCACACAAAAACCTTTAACGCTTGCTAATCAAGCAAATGTGCTGACAAATCCATGCTGGAAAAAACTAGCTTGATAAAGAATCATTGTTTATGAACAGAACATGCTTacaaaatgtgttcttaacaAAACTTATTTGTGAAAAATATTTCGCTAAAGACAAGGGGATGAAGATGACTTCACATGCCCAGTTCTGATTGCTGCCACCTGACGAATATGTTGGTATTGCAAGGTTTATGTAGACATCTGGAATCTTATTTTCCGATAAGTAGAGTTGTAACCTTAAACTCGTACATCAAATCTGAAAAGGAAAAGCAGGAAAAAAAATCTGGTCTTTGTTTCCGAAGCCCAATCGCTACTAGAGCGCACAAAACAAGACAGTTTCATTCCCAGATCGGACGATAATTAAGATGATGCCTCGATCGCCCCACGTGGCTAGTTCTGAGAAGTGATTCTGCTGCCGGTACCCTGAGTCACACTCTAAGAGGTTGAGTCTATATTGTCTTTTCTACAGCCTCTGTTCCATGGCCTTGTCCATCAACctactccactctccctctcaccGATTCCTTTCTTCATTCTTCAACTTGGAAGGTCCCACCAGAGAAGAGGGTATGGGTCAGGATATCACCTTCCCTTTCCCTCTTCCCACTCCATCTCTATCGCTCACTGCTGCGCCTCTTCGGCCTCAGGCTGGGCCTGGGCCTCAGGTTGGGCCTCCGGCTGGGCCTGCTCCTGAGCAGGCCtggctgggggaggagggggcatTGCCTGGTGTTGTCTCTGGCGGTAGGCGATGACGGTGCCTAGCAGCAGGGCGATTACCGTCATTAGGTAGAGGTCCCACTCAGGGCCCAGGAGCTGGTCCAGGTCCACCTGACTGACCACCTC

Function

NR:

description
PREDICTED: protein sel-1 homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474437.2 False 4339 mRNA 0.44 4 28815791 28822977
TU789139 True 2526 lncRNA 0.43 4 28822641 28825392

Neighbor

gene id symbol gene type direction distance location
LOC110529749 NA coding upstream 1748 28809743 ~ 28814043 (+)
LOC110531084 LOC106571688 coding upstream 9375 28804730 ~ 28806416 (+)
itpk1a itpk1 coding upstream 119067 28633084 ~ 28696724 (+)
si:dkeyp-55f12.3 NA coding upstream 190181 28623534 ~ 28625610 (+)
btbd7 btbd7 coding upstream 210166 28495104 ~ 28605625 (+)
vipas39 vipas39 coding downstream 37682 28860659 ~ 28881460 (+)
LOC110529754 gp132 coding downstream 66342 28889319 ~ 28916134 (+)
cdca4 LOC106571684 coding downstream 107691 28930668 ~ 28939888 (+)
si:dkey-177p2.6 LOC106571683 coding downstream 128553 28951530 ~ 28967748 (+)
LOC110529758 LOC106571678 coding downstream 517927 29340904 ~ 29867575 (+)
G693271 NA non-coding upstream 17544 28798039 ~ 28798247 (+)
G693270 NA non-coding upstream 18235 28797304 ~ 28797556 (+)
G693266 NA non-coding upstream 21141 28794435 ~ 28794650 (+)
G693263 NA non-coding upstream 23555 28791933 ~ 28792236 (+)
G693262 NA non-coding upstream 24321 28791263 ~ 28791470 (+)
G693290 NA non-coding downstream 22692 28845669 ~ 28845992 (+)
G693565 NA non-coding downstream 119438 28942415 ~ 28943304 (+)
G693589 NA non-coding downstream 182304 29005281 ~ 29008220 (+)
G693611 NA non-coding downstream 221332 29044309 ~ 29044703 (+)
G693207 NA other upstream 110039 28704850 ~ 28705752 (+)
G692424 NA other upstream 745563 28069900 ~ 28070228 (+)
xrcc3 xrcc3 other upstream 843775 27951635 ~ 27972016 (+)
G692343 LOC106571710 other upstream 919804 27895701 ~ 27895987 (+)
G694036 NA other downstream 968020 29790997 ~ 29792747 (+)
G699605 NA other downstream 5304616 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 6631871 35454437 ~ 35462086 (+)
G700685 NA other downstream 6790187 35613164 ~ 35614666 (+)

Expression


Co-expression Network