Gene
RNA
| Item | Value |
|---|---|
| gene id | vipas39 |
| gene name | vipas39 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 28860659 ~ 28881460 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| vipas39 | Acts upstream of or within hepaticobiliary system development. Predicted to be located in early endosome; late endosome; and recycling endosome. Predicted to be active in cytoplasm. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog). |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0007283 | spermatogenesis | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0061008 | hepaticobiliary system development | biological_process |
| GO:0005769 | early endosome | cellular_component |
| GO:0005770 | late endosome | cellular_component |
| GO:0055037 | recycling endosome | cellular_component |
| id | description |
|---|---|
| K23287 | VIPAS39, VPS16B; VPS33B-interacting protein in polarity and apical restriction |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612231.2 | False | 2197 | mRNA | 0.46 | 19 | 28860659 | 28881460 |
| XM_021612233.2 | False | 2183 | mRNA | 0.46 | 19 | 28861242 | 28881460 |
| XM_036985236.1 | True | 2170 | mRNA | 0.46 | 19 | 28861430 | 28881460 |
28,860,000
28,864,000
28,868,000
28,872,000
28,876,000
28,880,000
28,884,000
28,888,000
28,892,000
28,896,000
28,900,000
28,904,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529751 | NA | coding | upstream | 37682 | 28815791 ~ 28825392 (+) |
| LOC110529749 | NA | coding | upstream | 46616 | 28809743 ~ 28814043 (+) |
| LOC110531084 | LOC106571688 | coding | upstream | 54243 | 28804730 ~ 28806416 (+) |
| itpk1a | itpk1 | coding | upstream | 163935 | 28633084 ~ 28696724 (+) |
| si:dkeyp-55f12.3 | NA | coding | upstream | 235049 | 28623534 ~ 28625610 (+) |
| LOC110529754 | gp132 | coding | downstream | 7859 | 28889319 ~ 28916134 (+) |
| cdca4 | LOC106571684 | coding | downstream | 49208 | 28930668 ~ 28939888 (+) |
| si:dkey-177p2.6 | LOC106571683 | coding | downstream | 70070 | 28951530 ~ 28967748 (+) |
| LOC110529758 | LOC106571678 | coding | downstream | 459444 | 29340904 ~ 29867575 (+) |
| LOC110529762 | LOC100136382 | coding | downstream | 1057649 | 29939109 ~ 29970121 (+) |
| G693290 | NA | non-coding | upstream | 14667 | 28845669 ~ 28845992 (+) |
| G693271 | NA | non-coding | upstream | 62412 | 28798039 ~ 28798247 (+) |
| G693270 | NA | non-coding | upstream | 63103 | 28797304 ~ 28797556 (+) |
| G693266 | NA | non-coding | upstream | 66009 | 28794435 ~ 28794650 (+) |
| G693565 | NA | non-coding | downstream | 60955 | 28942415 ~ 28943304 (+) |
| G693589 | NA | non-coding | downstream | 123821 | 29005281 ~ 29008220 (+) |
| G693611 | NA | non-coding | downstream | 162849 | 29044309 ~ 29044703 (+) |
| G693612 | NA | non-coding | downstream | 164760 | 29046220 ~ 29046495 (+) |
| G693207 | NA | other | upstream | 154907 | 28704850 ~ 28705752 (+) |
| btbd7 | btbd7 | other | upstream | 302286 | 28495104 ~ 28605625 (+) |
| G692424 | NA | other | upstream | 790431 | 28069900 ~ 28070228 (+) |
| xrcc3 | xrcc3 | other | upstream | 888643 | 27951635 ~ 27972016 (+) |
| G692343 | LOC106571710 | other | upstream | 964672 | 27895701 ~ 27895987 (+) |
| G694036 | NA | other | downstream | 909537 | 29790997 ~ 29792747 (+) |
| G699605 | NA | other | downstream | 5246133 | 34127593 ~ 34128301 (+) |
| LOC110529856 | LOC106571576 | other | downstream | 6573388 | 35454437 ~ 35462086 (+) |
| G700685 | NA | other | downstream | 6731704 | 35613164 ~ 35614666 (+) |
