LOC110529760 (LOC106571680)


Basic Information

Item Value
gene id LOC110529760
gene name LOC106571680
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29460990 ~ 29465444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612264.2
TTCATCAATTGTAGCATAGCAGAGGAACATGCCCCTCTAACATACAGAGTTAAATTAGTTATTGGTGTGGGCTTTATGATGGCAACCATTCTCAGGGTAACGTTAAAGCTGCTGATGTTGTTCTTACTGGTGGTAAACTTCATCTCTCCTGCTTTTCCACATACTTACAGCACTGACCCATGGCAACGACAACTTCCAAGCCGAATGCCCCAAATTGGCATTCATCTGCCCTTTAAACAGCATCAAGGCCACCAACAATCCATTTCCAGACCAGATCCAGTGAAAACTGTTGCTGTGAAATGCTTTTCAGACTACGTGGAGATAGTAGTGAATGCTGATTTGTTTAAAATTGGTACGCTTATCGACATGGCTGACCTGCGCCTTGGAGTTGAACAGTACCAAGCTCAAGAGTCCTGTAGGGCTACAGTTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTATCGGACTGTGGAACCAAGCATATGCTGAACGAGAACTCCTTGATCTACACAAACCACCTCAGATATACACCCAGTAACACTCCAGATGGGGTTATTAGAATGGATGGCGCTGTAATCCCAATTGAGTGTCACTATGAAAGGAAGTACAGTTTGAACAGTGTCCCTCTCCAGTCGACCTGGATCCCCTTTACCGCCACAGTGTCTGCTGAGGACACCCTGCAGTTCTCCTTGATGCTCATGACAAGTGGGTGTAACTGGCTTTATGAGCGGGGTTCGGGAGTCTACTTCCTGGGTGATCCCATCAACGTGGAGGTGTCTGTCAGGCTCGTTCACCACACCAGGCTCAGGGTCTTTGTTAGCAGCTGCGCGGCAACACTGGACCCAGACTGGAACTCTGTCCCCAGATACGTCTTCATTGAAAATGATGGGTGCTTGATGGATTCCCAGTTGCCTGGCTCCAACTCCAGGTTCATGCGTAGAACCCAGGACGACAAGCTCCGCTTCCACATTGATGCCTTTAGGTTCCACCAGGAGGACAGGGCGGAGCTGTACATCACATGCCACCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATCGATGGCAGGTGGAAGTCTGCCGACGTGAATGATTTGCTATGTGGCCGTTGTCCAAGTCTGAATAGCCAGAAGGTGGTCGCTCCAGCACGCCGTCCCCTCAGTGAAAGATTAGGCAGTAGCCCACCAGAACCTCGTGGCTACCACAGCAAACACCCAGCCTCTGGTGACCACTGGAGGAGTGGGATGAAGACCAATAAAGTGTGGGAACAGCATGCTACTTTGGGCCCAGTGATTGTCTTCCCAACCAAACAGAAGGGTTCACTTCTATCACCACGGACAAAAGAAGTTGTCCATCCACATGGCTTCCCCTCTGCTACAGACAACGCAAGGCCTGCATCACCTAGCAGTCGTTGGAAGAGTGGAATGGACTTCAAGAGAGGACCTTATTTCGGCCAGTTGCAAAATGCGGGTGGTCATGGACCCAATAAACATGGTTTTGTTAGCTCTGCAACGTATGACGGCATCATCAGGCAGAAATAACTGATTGAGCAAAGAGAGCTGGAGCCCACCCCAGATCCTCAGTTGAATCCTACCCCTGAGCCCATTGGAGCAAAGATGACCAGAGATTACTCATGAACTGGAAGTTGACGTTGCTGTGGTGACCACATTTGGTCTAGCAGCACTCCAACTCACTGAGGGATGTCCTGAAGTCCCAGCACAAGGTTGAGCCTACAACTACCAAATGACCTCTGCACTTTCCTCACATCTGTTCCTGATGAGGTCAACAATGCTGAGAACTCAACCTGTGATACCAAACACCAAGGGGACACTCAAAGGAACAAGATCAACCCAAGTGGTGACTGTCAACATCACAAAAATAAATTGAAGCTACTTTGA
>XM_021612266.2
TTCATCAATTGTAGCATAGCAGAGGAACATGCCCCTCTAACATACAGAGTTAAATTAGTTATTGGTGTGGGCTTTATGATGGCAACCATTCTCAGGGTAACGTTAAAGCTGCTGATGTTGTTCTTACTGGTGGTAAACTTCATCTCTCCTGCTTTTCCACATACTTACAGCACTGACCCATGGCAACGACAACTTCCAAGCCGAATGCCCCAAATTGGCATTCATCTGCCCTTTAAACAGCATCAAGGCCACCAACAATCCATTTCCAGACCAGATCCAGTGAAAACTGTTGCTGTGAAATGCTTTTCAGACTACGTGGAGATAGTAGTGAATGCTGATTTGTTTAAAATTGGTACGCTTATCGACATGGCTGACCTGCGCCTTGGAGTTGAACAGTACCAAGCTCAAGAGTCCTGTAGGGCTACAGTTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTATCGGACTGTGGAACCAAGCATATGCTGAACGAGAACTCCTTGATCTACACAAACCACCTCAGATATACACCCAGTAACACTCCAGATGGGGTTATTAGAATGGATGGCGCTGTAATCCCAATTGAGTGTCACTATGAAAGGAAGTACAGTTTGAACAGTGTCCCTCTCCAGTCGACCTGGATCCCCTTTACCGCCACAGTGTCTGCTGAGGACACCCTGCAGTTCTCCTTGATGCTCATGACAAGTAACTGGCTTTATGAGCGGGGTTCGGGAGTCTACTTCCTGGGTGATCCCATCAACGTGGAGGTGTCTGTCAGGCTCGTTCACCACACCAGGCTCAGGGTCTTTGTTAGCAGCTGCGCGGCAACACTGGACCCAGACTGGAACTCTGTCCCCAGATACGTCTTCATTGAAAATGATGGGTGCTTGATGGATTCCCAGTTGCCTGGCTCCAACTCCAGGTTCATGCGTAGAACCCAGGACGACAAGCTCCGCTTCCACATTGATGCCTTTAGGTTCCACCAGGAGGACAGGGCGGAGCTGTACATCACATGCCACCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATCGATGGCAGGTGGAAGTCTGCCGACGTGAATGATTTGCTATGTGGCCGTTGTCCAAGTCTGAATAGCCAGAAGGTGGTCGCTCCAGCACGCCGTCCCCTCAGTGAAAGATTAGGCAGTAGCCCACCAGAACCTCGTGGCTACCACAGCAAACACCCAGCCTCTGGTGACCACTGGAGGAGTGGGATGAAGACCAATAAAGTGTGGGAACAGCATGCTACTTTGGGCCCAGTGATTGTCTTCCCAACCAAACAGAAGGGTTCACTTCTATCACCACGGACAAAAGAAGTTGTCCATCCACATGGCTTCCCCTCTGCTACAGACAACGCAAGGCCTGCATCACCTAGCAGTCGTTGGAAGAGTGGAATGGACTTCAAGAGAGGACCTTATTTCGGCCAGTTGCAAAATGCGGGTGGTCATGGACCCAATAAACATGGTTTTGTTAGCTCTGCAACGTATGACGGCATCATCAGGCAGAAATAACTGATTGAGCAAAGAGAGCTGGAGCCCACCCCAGATCCTCAGTTGAATCCTACCCCTGAGCCCATTGGAGCAAAGATGACCAGAGATTACTCATGAACTGGAAGTTGACGTTGCTGTGGTGACCACATTTGGTCTAGCAGCACTCCAACTCACTGAGGGATGTCCTGAAGTCCCAGCACAAGGTTGAGCCTACAACTACCAAATGACCTCTGCACTTTCCTCACATCTGTTCCTGATGAGGTCAACAATGCTGAGAACTCAACCTGTGATACCAAACACCAAGGGGACACTCAAAGGAACAAGATCAACCCAAGTGGTGACTGTCAACATCACAAAAATAAATTGAAGCTACTTTGA

Function

NR:

description
zona pellucida sperm-binding protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612264.2 False 1929 mRNA 0.49 11 29460990 29465444
XM_021612266.2 True 1923 mRNA 0.49 11 29460990 29465444

Neighbor

gene id symbol gene type direction distance location
LOC118965624 NA coding downstream 237226 29213787 ~ 29223764 (-)
LOC118965608 NA coding downstream 247411 29212152 ~ 29213579 (-)
LOC118965623 NA coding downstream 252062 29204150 ~ 29208928 (-)
LOC118965622 NA coding downstream 257510 29202386 ~ 29203480 (-)
LOC110529223 snw1 coding downstream 364955 29046423 ~ 29096035 (-)
LOC110529761 cep128 coding upstream 425111 29890555 ~ 29938331 (-)
gtf2a1 LOC106571676 coding upstream 507067 29972511 ~ 29986359 (-)
ches1 LOC105017690 coding upstream 536320 30001764 ~ 30062244 (-)
LOC118965505 NA coding upstream 573137 30038581 ~ 30040011 (-)
LOC110529769 LOC106571671 coding upstream 751564 30217008 ~ 30227240 (-)
G694028 NA non-coding downstream 124576 29336160 ~ 29336414 (-)
G694006 NA non-coding downstream 141872 29318884 ~ 29319118 (-)
G693998 NA non-coding downstream 152278 29308492 ~ 29308712 (-)
G693977 NA non-coding downstream 172885 29287882 ~ 29288105 (-)
G693975 NA non-coding downstream 173603 29287144 ~ 29287387 (-)
G694476 NA non-coding upstream 25889 29491333 ~ 29493954 (-)
G694478 NA non-coding upstream 29571 29495015 ~ 29510015 (-)
G694483 NA non-coding upstream 43596 29509040 ~ 29527264 (-)
G694487 NA non-coding upstream 63589 29529033 ~ 29532973 (-)
G694488 NA non-coding upstream 64785 29530229 ~ 29533751 (-)
G693665 NA other downstream 502158 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 866559 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 979092 28478817 ~ 28481944 (-)
G692859 NA other downstream 1344942 28115736 ~ 28116048 (-)
G691747 NA other downstream 2145055 27315568 ~ 27315935 (-)
G694858 LOC105017690 other upstream 536319 30001763 ~ 30062168 (-)
G696068 NA other upstream 1381458 30846902 ~ 30847209 (-)
G696073 NA other upstream 1389663 30855107 ~ 30855407 (-)
G696499 NA other upstream 2011910 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 2192282 31657632 ~ 31703525 (-)

Expression


Co-expression Network