LOC110529766 (LOC107589657)


Basic Information

Item Value
gene id LOC110529766
gene name LOC107589657
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30168121 ~ 30173329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110529766
ATGACACTGATCCCCCTGGTCACGGAGGACAGGACAGCCAGATCCAGGAGATCAAGGTACAAGAAGAGGACTCCACTAAACGTCATACCTTGTAACTGCTTAGAGTCCGTGGAGCTGCCCCTCACCCACCCTGAGTACTATGAGGAGATGGGCATCAAGCCCTCTAAAGGAGTCATCCTCTACGGAGCACCTGGCACTGgtAAGATCCTGCTGGCCAAGGCGGTGGCCAACCAGACATCAGCTACATTTCTGCGTGTGGTTGGCTCAGAGCTGATCCAGAAGTACCAGGGAGACAGGCCCAAGCTGGTCCGAGAGCTGTTCAGGGTGGGCCGAGGAACACGCACCATCTATCGTCTTTATCGACGAGATAGACGCCATCGGCAGTAAACTATATGAGTCTGactctggaggagagagggagatccaGAGGACCATGTTGGAGCTGCTCAACCAGCTGGACGGTTTTGACTCCAAAGGAGATGTCAAGGTGATCATGGCTCCCGACAGGATAGAGACCCTAGACCCTGCATTCATCAGACCTGGTCGTACTGACAGAAAGATAGAGTTCCCTCTGCCTGATGAGAAGACCAAGAGGAGGATCTTCAACATCCACGCCAGCAGGATGACTGTAGCCGACGACGTCCCCCTGGACGATCTGATCCTGGCCAAGGATGACCTGTCAGTTGCTGACATCAAGATATGGATGTCCAGGGTTTCCTCTACCACAGTGGTCCTCAACCTGGgCGATCTGCACCGAGGAAGGACTCATGGCCCTGAGAGAGCGCAGAATGAAGGTCACCGACGAAGACTTCAAGAAGTCCTCTTTGGACTTCAGGAGGGTACGCCGGAGGGTACGCTGGAGGGCCTGTACCGCTAACCCCGGACCTCGGACGTTTAACCCCTGACCTGTACCCTGTCCGCGGTGTGAGAGAGCTTTGATGTATTTCGTTGCATGTTACGTTTGGCTTCCTTTCCAGTTGTCTACTTTAACTTCATGAACTCTGACGATAAATACAAGAATTTGAATGGGAGAGAAGTGTTGTTATTCCTCGTTCCATGTATGATTACTCTCATTTCCCTCCGTGCTCCGTTTAGTACAGGTAGTGTCACGTAGTCAGTTGTCCTAAAGTTTGGTCTTCATTGGAGAAGCCTGCAAATCTAGGCTAGAGTAGAAGTAGTGTTCAATAGCATACAGTCTGCATCATACCCACGTCTGGGTTCCATAACTGGTTCATCAGCCCCAGTAACAATCTTTCTATGTTTATTTTGCGGTAAATGAATCCCGTTTTATTTATTCCGCTCAATCACCATCTTCCAGTAGTATTCAGACTTCAGACAgcactgtacatactgtttaTACAGATGCCCTGTTTCTTCATAGTCACACTTAAGGGATATCACTCTATTCCTCTTGGTTGCAGAGGTCTGTCTAATTCCCAAGACAGAATAACGGAACAAAGGAGGAGGATGCAACCATTGTCCTGATGCTGAAACTATTGTATCTCTCCTTACTATcttgctccctctttctctttgctTAAAAGAAGACCTCCATTAATAACAGGAATGTTCCAGTATCTCCCGCACATGACGTCGTTTAGGAGCCACCCCAGAAACAGTCACCCGGACACACATCTAAATAGTCCCTCACATCACTTCTCTCTGTTTTAATAGGAAGTGTAGTATATCGCTTTGATATGAAAAAAGACATGTTATACACGTGCGTGCACACACTGGAACAAATCAGCTCCTCCGAATCCTTCTGGGCCTCTCAGAAGCTACTCATTTCCAATCCCCATTTCAGTGATTCTCCCCTATGTTCACCCCTTTTCCAGTACACTGAGTTTAAGAGCACAAATTAATCTGCTTTTTGTGTGCCGTTGCGCAGCTGCAGTTCATTTGACACGTGAGACGCAGAGACGCAGCATCGATTTAATTCCTCTTGATGTGGGGCCATGTATAACTTTGTATTCAGCAGAACGCTCGCTAGCCCATACAGTTTCCTTTTGGGATTGAGTGAAAATGCCGCACGCAGCCCTGATCACTCTCCATGTCATCCCCCTTATTAACTCTGTCACGCAGTTCAACTGCAACGCAGCGCACATTGCAGCACATTCAGCAAACCCTAAGAAAACTTGAAATCAAGCGTGGCGTATAGTAGGGCCAGAGAGACAGGataggaaggaggggagaggaaggaggggcgAATTGTAATGAGCCATTTGGCCTGCCAAGGGTAATATCTGTTGAGGATGTCTGAGCCACACCATGCATGCCGGTATTAGAGACTGTTGGTAGTTATAACTACTGGTTATTACTGTTTAATAAAACATATGTAATGTGGGActgtcatataataataataaaggctAACCTT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110529766 True 2377 mRNA 0.48 7 30168121 30173329
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529765 LOC106571674 coding upstream 9797 30149988 ~ 30158324 (+)
LOC110529762 LOC100136382 coding upstream 198000 29939109 ~ 29970121 (+)
LOC110529758 LOC106571678 coding upstream 300546 29340904 ~ 29867575 (+)
si:dkey-177p2.6 LOC106571683 coding upstream 1200373 28951530 ~ 28967748 (+)
cdca4 LOC106571684 coding upstream 1228233 28930668 ~ 28939888 (+)
LOC110529767 LOC107396020 coding downstream 2410 30175739 ~ 30190971 (+)
LOC110529768 LOC106571670 coding downstream 54080 30227409 ~ 30243300 (+)
LOC110529770 LOC106571673 coding downstream 78137 30251466 ~ 30263484 (+)
LOC118965506 NA coding downstream 482292 30655621 ~ 30665458 (+)
LOC110529772 LOC106571664 coding downstream 636160 30809489 ~ 30878195 (+)
G694819 NA non-coding upstream 22654 30145266 ~ 30145467 (+)
G694818 NA non-coding upstream 23141 30144707 ~ 30144980 (+)
G694817 NA non-coding upstream 23428 30143941 ~ 30144693 (+)
G694816 NA non-coding upstream 25907 30141956 ~ 30142214 (+)
G694986 NA non-coding downstream 28137 30201466 ~ 30201774 (+)
G694970 LOC107693096 non-coding downstream 49058 30222387 ~ 30222914 (+)
G695005 LOC106571669 non-coding downstream 96197 30269526 ~ 30272291 (+)
G695018 NA non-coding downstream 119225 30292554 ~ 30293187 (+)
G695022 NA non-coding downstream 123336 30296665 ~ 30297082 (+)
G694036 NA other upstream 375374 29790997 ~ 29792747 (+)
G693207 NA other upstream 1462369 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 1609748 28495104 ~ 28605625 (+)
G692424 NA other upstream 2097893 28069900 ~ 28070228 (+)
G699605 NA other downstream 3954264 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 5281519 35454437 ~ 35462086 (+)
G700685 NA other downstream 5439835 35613164 ~ 35614666 (+)
G700864 NA other downstream 5730720 35904049 ~ 35904698 (+)
G702415 NA other downstream 6527109 36700438 ~ 36700739 (+)

Expression

LOC110529766(LOC107589657) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110529766(LOC107589657) Expression in each Bioproject

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LOC110529766(LOC107589657) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network