LOC100135953 (LOC100135953)


Basic Information

Item Value
gene id LOC100135953
gene name LOC100135953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30243504 ~ 30251391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124296.1
ACACCACGGATGAATTTGAAGTTGTAGCAATCGGGCCTAATTCGCTAGCTACGTATTTGAATACAAATTATAACGTTTAACAAAAAATCTAATACAGGACATTCAACAGTGTTGTTCTGTAACCATACGATACAGtgatgCCGAACCTTAGCTGTAGGTTCTACCAGCACCGGTTCCCTGAGGTGGAGGATGTGGTGATGGTGAACGTGCGCTCCATCGCCGAGATGGGCGCCTATGTCAGCCTGCTGGAGTACAACAACATTGAGGGCATGATCCTGCTGAGCGAGTTGTCGCGCCGACGTATCCGCTCCATCAACAAGCTCATTAGGATCGGACGCAATGAGTGCGTGGTGGTCATCCGAGTGGACAAAGAGAAGGGGTACATTGATTTATCAAAGAGAAGAGTTTCGCCAGAGGATGCTATCAAATGTGAAGACAAATTCACCAAATCTAAAACCGTGTACAGTATCCTTCGACACGTGGCTGAGGTGCTGGAGTACACTAAGGACGAGCAGCTGGAGAGCTTGTTCACGCGCACTGCCTGGGTGTTTGATGAGAAGTACAAGCGTCCGGGATACGGCGCCTACGACGTCTTCAAACAGGCTGTATCTGACCCTGCCATGCTGGATGGGCTAGACCTGACCGAGGAGGAGAGGGCCGTGCTCATCGACAACATCAACAGGCGTCTCACTCCACAGGCTGTCAAAATCAGAGCAGACATCGAGGTGGCATGCTACGGGTATGAGGGCATTGACGCTGTGAAGGACGCACTGAGGGCGGGGCTTAGCTGCTCGACAGAGGCCATGCCCATCAAGATTAATCTGATAGCACCGCCACGCTACGTCATGACCACAACCACTCTGGAGCGCACCGAGGGCCTTTCGGTTCTCAACCAGGCCATGGCAGCCATCAAGGAGAGGATCGAGGAGAAGAGGGGCGTCTTTAACATCCAGATGGAGGCGAAGGTGGTGACGGACACGGACGAGACCGAACTGGCCCGTCAGCTTGAGAGGCTAGAGCGGGAGAATGCAGAGGTGGACGGAGACGATGAGGACGGAGAGATGGAGGCTAAAGCAGAGGACTAGTCCAGTTAGCCCTGAAAGAAGGGTCGTTTGGAAGAAAACAAAAGGATGGACAGACTTCGCCATAGTCGCACTGTCCCACAGATGTGCAACTCTCATATTACATAGAGGTATTCACTGGCTAATAACCCTCTAAATTGATAATTAGGGACTTCTCAGAAGGAGAGAAACATACATTGCTATTCTCttaagtctagaggtggatagaCGGAAATGTGTTAAAGCAAATAAGACAAACTATACCAGTAACCATTTACAGTACAAACACCAATTATACCTATATATATGCAGAAAACTGTTTACAAGCAGTGGCCATCGCAAATTCACCTCTCGCTGGTCACAGGAAGTGATGCATAGGCTCTAGTTGTGTGTGATACTGGCGTGGGTTACTTATGTGCTGTTCCTCTTCCAGTAGTATGGATTTTTACTGGCAGGATCTTGCTTTTGTGTAGCTCATGACATCAATAAAGTTCTGCACGTTTGA

Function

NR:

description
eukaryotic initiation factor 2 alpha subunit

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005850 eukaryotic translation initiation factor 2 complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03237 EIF2S1; translation initiation factor 2 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124296.1 True 1566 mRNA 0.49 8 30243504 30251391

Neighbor

gene id symbol gene type direction distance location
LOC110529769 LOC106571671 coding downstream 16264 30217008 ~ 30227240 (-)
ches1 LOC105017690 coding downstream 181260 30001764 ~ 30062244 (-)
LOC118965505 NA coding downstream 203493 30038581 ~ 30040011 (-)
gtf2a1 LOC106571676 coding downstream 257145 29972511 ~ 29986359 (-)
LOC110529761 cep128 coding downstream 305173 29890555 ~ 29938331 (-)
LOC110529225 LOC106571669 coding upstream 12194 30263585 ~ 30292341 (-)
LOC110529226 gphn coding upstream 41060 30292451 ~ 30419612 (-)
LOC110529771 LOC106571665 coding upstream 277898 30529289 ~ 30687478 (-)
LOC118965507 LOC106569332 coding upstream 515860 30767251 ~ 30769345 (-)
LOC110529773 LOC106571662 coding upstream 660740 30912131 ~ 30989709 (-)
G695102 rbm25 non-coding downstream 10467 30228141 ~ 30233037 (-)
G695099 NA non-coding downstream 56004 30186472 ~ 30187500 (-)
G695092 NA non-coding downstream 68127 30175004 ~ 30175377 (-)
G694939 NA non-coding downstream 84150 30154300 ~ 30159354 (-)
G694937 LOC106571674 non-coding downstream 92449 30150040 ~ 30151055 (-)
G695100 NA non-coding upstream 90 30251481 ~ 30252854 (-)
G695152 NA non-coding upstream 48769 30300160 ~ 30416414 (-)
G695199 NA non-coding upstream 169344 30420735 ~ 30420956 (-)
G695217 NA non-coding upstream 184948 30436339 ~ 30436663 (-)
G694858 LOC105017690 other downstream 181336 30001763 ~ 30062168 (-)
G693665 NA other downstream 1284672 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 1649073 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 1761606 28478817 ~ 28481944 (-)
G692859 NA other downstream 2127456 28115736 ~ 28116048 (-)
G696068 NA other upstream 595511 30846902 ~ 30847209 (-)
G696073 NA other upstream 603716 30855107 ~ 30855407 (-)
G696499 NA other upstream 1225963 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 1406335 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1963095 32214451 ~ 32217572 (-)

Expression


Co-expression Network