LOC110529772 (LOC106571664)


Basic Information

Item Value
gene id LOC110529772
gene name LOC106571664
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30809489 ~ 30878195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612290.2
CAAACCACGGGACTGTAGAGGAAAAGAGGGGCAAAGGGGGGAAAGAGAGCAGGTGGTGTATAGGCTACGAAACATGTAGGCTGGGGAGACCGCCTAAGTAAATTGACCATAAATccaatgagagagagcgagagagagcgagagagagagagaaaaaaaaaatccggGAAAGAAGAAGCAAATAGCAAAGAGACGCCAATTAGACCGGCAAAATCGGCCCGGAGCCGTGGAGAGCATAGCCACTTGGCTACTTCTGCATCGTCGGTTTTATAAATCAGACTTTTGAAGATATTATTTTCACAGTTGGCTTATTCTATCGATGCTGTTGGCTTGAATTGAGGTTTTTTTCAAGGTAATTTACGGCCACAGTAGTTGGACCGCGTTTTACATTGTGTGCTGTGCCTAGCTCTCAGTGGATTAAACGGTCGTCTCCGGAGCCTGCTGCAGAGGAATAGGGGAATTTCAGCACCCTGGACAGCGACTAGCAGTTGAGgcAGTGGCGAAGCCGGCACGTGGCGTTAGGCGAGAGGATGTTGTGTCTCTGGCCCAGTGTGAGAGCCTCCCTCCGGGAAAGTTGCCGTTGGTCGCGGGGCCCAACGGGCCACTGACCTCCCCCTCCCTTGTCTCTGTGATTTATGGCTACTGGGGATCTGGCCACTGCAGAATCCTCTTTCACTTTCACattcacaaacacatacactgcACCACTGGACAGAGCCACACACACTGCACCAGCTTCGCCAGTGCTGCCCCACAGGGTGATTCCGCCACACACTGAATAACAGaatctctctcagcctccacacGCACTGAGGGACTGAGCTGCACAAACACACTGCTTTTCTCTACCCCATAGAGCCTCATATTGCACTCTGTGTGCTATACATGCCCCTCACACACCCCTCTGTGTATCTTCCACTCCCCCTCAGTGTGTGGATTAGCATCCCAGTATCAGTCATGGACCGTCAGCCATATAGCACCTCACAGTGGCGCCTGCTTTACTAGCAGGGGGGGATCAATGGAACTGCGCTGAGTGATGAGATGATGTTCCTGTGTTCGCATGGCCTGAGAAATGACCTACCAGCAGCCCTGCAAAGACTGacacaccccccctcccccacgaCTTCACTGTTTTTACTCACTGGACTGACTCTCAATAGATTAACTGTATGACTCACTGGTGTTCCCACAGGAACCCATTATTTTTCTAAACTCGGACACCGTGAACTGGAGGTGAGGGCCAGCAGGCGGTCGGGTCCAGTCCTCGCCATGGTGTTGCCACCTCCGGACAAACGCCACGTGTGCCTGACCACCATCGTCATCATGACCAGCATGGCCTTCATGGACGCCTACCTGGTGGAGCAGAACCAGGGGCCCAGGAAGATCGGCGTGTGCATCATCGTGCTGGTCGGGGACATCTGCTTCCTCATCGTGCTGCGCTACGTGGCCGTGTGGGTGGGCGCCGAGGTACGCACGGCCCGCCGCGGCTACGCCATGATCCTCTGGTTCCTCTACATATTTGTGCTGGAGATCAAGCTCTACTTCGTCTTCCAGAACTGCAAGGCAGATAGGAAGTCTCTGGAGACTGTGGCCCGGAAAGCCTTGACTCTGTTACTGTCTGTGTGCGTCCCAGGGCTTTACTTGGTTCTAGTGGCTCTGGACAACATGGAGTACGTGAGGACCTTCAGGAAGAAGGAGGACATGCGGGGGAGGCTCTTCTGGGTGGCTCTAGATCTTCTGGATCTTCTGGACATCCAGGCCAACCTGTGGGAGCCTCAGCGGACCGGCCTGCCAATCTGGGCCGAGGGACTGATGTTTTTCTACTgctacatcctcctcctcatcctgccCTGCGTCTCGCTCAGTGAGATCTCCATGCAAGGGGAGCACGTGTCGCCCCAGAAGATGATGCTCTATCCCATCCTTAGCCTAGTCACCATCAACGTGGTCACCATCCTGATCCGTGGGGTCAACATGGTCCTGTTCCAGGACAGTAGAGTCTCAACCATCTTCGTGGGCAAGAACGTGGTGGCGATCGCTACGAAGGCGTCCACGTTCCTGGAGTACCGGCGTCAAGTGAAGGAGTTCCCCCATCCGCAGAACACCATGGCGTTGGAGCTGCAGCAGAACTCGGTGTGCCATGGACATGCGCCCCACACATCGCACTCGCAGACCCTGCCCAACTCCACCAACCTGCCCCACGAACCCTCGCCAGCTCGCAACATAGACACATGACCGCCAGACACATGAGTCACTCCACTGTTGTGATCAGTGACTAACCAAAACCCTAAGTTCTGGCTGGACTTGTTCTATCTATCCAGCCGTGGAGATGTTGGTGTTAAGAGAGAAATGGGTTTCAAGACAGGATTGTATTGTTCTTCCTGTCATACAACTGTGAACAACTGTGGATATAACAACTAGAGGGATATTTATAGCCTAGACTGTCTgttggagaaggagaaagattCACCTTCTTGATTCTGACAAGAAGGAACTGACATGGTTTTTATTGAATTGTGTATCGAATTGTGTTTTTAAATTAACCGTTTTAAAACTTTATTAATAATATCGGACAATCTCCATATTCTGCAGCTCAGTGATGTACGTATGTTGTGTAACAGTAAATTGGAAAATGTGTTCCTCCCTGAATATATATGGGATTTTTTTCAAATGCCCCTTTTCGACCGTCCATTGCGTGGCTTTTATTCTTTGTTGTCCTTAGAAACGGAGGTACACCCCTCGCTCTGAAGAAGCACTTCAgttggagtggagaaagagaggatggagagaacgGGAAGGAGAAAGGGTCAATAAGAAGGTTTGTTTGAGCCGCGGTGGGGGGATGGGTGGCAATAGAAGAGTAAAATTCAGCCTCTGCTTAGTTCTGCTGAGAAAGGAGCCTGCTGCCTCTGTCAGTGTGATGTTTTATGACCAAATGTCTGATAAAAGCACCAGAGCTCAGCACTATACACTCCACTCAAGGCAGccaactctctgtgtgtgtgggcggatgggggggggggggggggggagcgtgTGAAACTGTATTTTCATGTACTGTAAGCGTGTGGCTTAACAAAAGTGGGTGTGAAAGAAACAACAAAGGGGAGAAGAGATGTGTTCATGTCAGAAAAACAGAAGGGAGAAAGATCGTGCTGATTTCCCTTACTGTACAGCCTTGAAGTCAAAAAATGCAGAGAAGTGCAGACCTTGCCTCGTTGACAAACGTTGAAATATAAATGTACAATCCAACCTGAGAACTGCAAACTATTTCTACTTAACTGATGAAGTGAGTGTTAAAGTATTATTCATatgattaatattattattatgtacATTCTTTACAAAAAACGTTATGTTGGAGGCAAGTAATGTTTTAA
>XM_021612292.2
TGGTCATGAGCAAACATTTTGATTGCCACACACAAAGTCAGTTTAATAATACTGAGGATATTGTGTCTACAATTTCGACCAGCTGAAGAATCAACACCACGGACAATCGGCAGAgcAGTGGCGAAGCCGGCACGTGGCGTTAGGCGAGAGGATGTTGTGTCTCTGGCCCAGTGTGAGAGCCTCCCTCCGGGAAAGTTGCCGTTGGTCGCGGGGCCCAACGGGCCACTGACCTCCCCCTCCCTTGTCTCTGTGATTTATGGCTACTGGGGATCTGGCCACTGCAGAATCCTCTTTCACTTTCACattcacaaacacatacactgcACCACTGGACAGAGCCACACACACTGCACCAGCTTCGCCAGTGCTGCCCCACAGGGTGATTCCGCCACACACTGAATAACAGaatctctctcagcctccacacGCACTGAGGGACTGAGCTGCACAAACACACTGCTTTTCTCTACCCCATAGAGCCTCATATTGCACTCTGTGTGCTATACATGCCCCTCACACACCCCTCTGTGTATCTTCCACTCCCCCTCAGTGTGTGGATTAGCATCCCAGTATCAGTCATGGACCGTCAGCCATATAGCACCTCACAGTGGCGCCTGCTTTACTAGCAGGGGGGGATCAATGGAACTGCGCTGAGTGATGAGATGATGTTCCTGTGTTCGCATGGCCTGAGAAATGACCTACCAGCAGCCCTGCAAAGACTGacacaccccccctcccccacgaCTTCACTGTTTTTACTCACTGGACTGACTCTCAATAGATTAACTGTATGACTCACTGGTGTTCCCACAGGAACCCATTATTTTTCTAAACTCGGACACCGTGAACTGGAGGTGAGGGCCAGCAGGCGGTCGGGTCCAGTCCTCGCCATGGTGTTGCCACCTCCGGACAAACGCCACGTGTGCCTGACCACCATCGTCATCATGACCAGCATGGCCTTCATGGACGCCTACCTGGTGGAGCAGAACCAGGGGCCCAGGAAGATCGGCGTGTGCATCATCGTGCTGGTCGGGGACATCTGCTTCCTCATCGTGCTGCGCTACGTGGCCGTGTGGGTGGGCGCCGAGGTACGCACGGCCCGCCGCGGCTACGCCATGATCCTCTGGTTCCTCTACATATTTGTGCTGGAGATCAAGCTCTACTTCGTCTTCCAGAACTGCAAGGCAGATAGGAAGTCTCTGGAGACTGTGGCCCGGAAAGCCTTGACTCTGTTACTGTCTGTGTGCGTCCCAGGGCTTTACTTGGTTCTAGTGGCTCTGGACAACATGGAGTACGTGAGGACCTTCAGGAAGAAGGAGGACATGCGGGGGAGGCTCTTCTGGGTGGCTCTAGATCTTCTGGATCTTCTGGACATCCAGGCCAACCTGTGGGAGCCTCAGCGGACCGGCCTGCCAATCTGGGCCGAGGGACTGATGTTTTTCTACTgctacatcctcctcctcatcctgccCTGCGTCTCGCTCAGTGAGATCTCCATGCAAGGGGAGCACGTGTCGCCCCAGAAGATGATGCTCTATCCCATCCTTAGCCTAGTCACCATCAACGTGGTCACCATCCTGATCCGTGGGGTCAACATGGTCCTGTTCCAGGACAGTAGAGTCTCAACCATCTTCGTGGGCAAGAACGTGGTGGCGATCGCTACGAAGGCGTCCACGTTCCTGGAGTACCGGCGTCAAGTGAAGGAGTTCCCCCATCCGCAGAACACCATGGCGTTGGAGCTGCAGCAGAACTCGGTGTGCCATGGACATGCGCCCCACACATCGCACTCGCAGACCCTGCCCAACTCCACCAACCTGCCCCACGAACCCTCGCCAGCTCGCAACATAGACACATGACCGCCAGACACATGAGTCACTCCACTGTTGTGATCAGTGACTAACCAAAACCCTAAGTTCTGGCTGGACTTGTTCTATCTATCCAGCCGTGGAGATGTTGGTGTTAAGAGAGAAATGGGTTTCAAGACAGGATTGTATTGTTCTTCCTGTCATACAACTGTGAACAACTGTGGATATAACAACTAGAGGGATATTTATAGCCTAGACTGTCTgttggagaaggagaaagattCACCTTCTTGATTCTGACAAGAAGGAACTGACATGGTTTTTATTGAATTGTGTATCGAATTGTGTTTTTAAATTAACCGTTTTAAAACTTTATTAATAATATCGGACAATCTCCATATTCTGCAGCTCAGTGATGTACGTATGTTGTGTAACAGTAAATTGGAAAATGTGTTCCTCCCTGAATATATATGGGATTTTTTTCAAATGCCCCTTTTCGACCGTCCATTGCGTGGCTTTTATTCTTTGTTGTCCTTAGAAACGGAGGTACACCCCTCGCTCTGAAGAAGCACTTCAgttggagtggagaaagagaggatggagagaacgGGAAGGAGAAAGGGTCAATAAGAAGGTTTGTTTGAGCCGCGGTGGGGGGATGGGTGGCAATAGAAGAGTAAAATTCAGCCTCTGCTTAGTTCTGCTGAGAAAGGAGCCTGCTGCCTCTGTCAGTGTGATGTTTTATGACCAAATGTCTGATAAAAGCACCAGAGCTCAGCACTATACACTCCACTCAAGGCAGccaactctctgtgtgtgtgggcggatgggggggggggggggggggagcgtgTGAAACTGTATTTTCATGTACTGTAAGCGTGTGGCTTAACAAAAGTGGGTGTGAAAGAAACAACAAAGGGGAGAAGAGATGTGTTCATGTCAGAAAAACAGAAGGGAGAAAGATCGTGCTGATTTCCCTTACTGTACAGCCTTGAAGTCAAAAAATGCAGAGAAGTGCAGACCTTGCCTCGTTGACAAACGTTGAAATATAAATGTACAATCCAACCTGAGAACTGCAAACTATTTCTACTTAACTGATGAAGTGAGTGTTAAAGTATTATTCATatgattaatattattattatgtacATTCTTTACAAAAAACGTTATGTTGGAGGCAAGTAATGTTTTAA
>TU791879
CCACTTGGCTACTTCTGCATCGTCGGTTTTATAAATCAGACTTTTGAAGATATTATTTTCACAGTTGGCTTATTCTATCGATGCTGTTGGCTTGAATTGAGGTTTTTTTCAAGGTAATTTACGGCCACAGTAGTTGGACCGCGTTTTACATTGTGTGCTGTGCCTAGCTCTCAGTGGATTAAACGGTCGTCTCCGGAGCCTGCTGCAGAGGAATAGGGGAATTTCAGCACCCTGGACAGCGACTAGCAGTTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612290.2 False 3380 mRNA 0.50 2 30809489 30878195
XM_021612292.2 False 3001 mRNA 0.50 2 30869079 30878195
TU791879 True 255 lncRNA 0.45 1 30809728 30809982

Neighbor

gene id symbol gene type direction distance location
LOC118965506 NA coding upstream 144031 30655621 ~ 30665458 (+)
LOC110529770 LOC106571673 coding upstream 546005 30251466 ~ 30263484 (+)
LOC110529768 LOC106571670 coding upstream 566189 30227409 ~ 30243300 (+)
LOC110529767 LOC107396020 coding upstream 618518 30175739 ~ 30190971 (+)
LOC110529766 LOC107589657 coding upstream 636160 30168121 ~ 30173329 (+)
ndufb1 NA coding downstream 165832 31044027 ~ 31047423 (+)
LOC110529776 LOC106571659 coding downstream 177015 31055210 ~ 31097963 (+)
LOC110529228 LOC106571658 coding downstream 251315 31129510 ~ 31140471 (+)
LOC110531085 NA coding downstream 267339 31145534 ~ 31146912 (+)
si:dkey-174m14.3 LOC106571655 coding downstream 279677 31157872 ~ 31204182 (+)
G695618 NA non-coding upstream 19660 30789381 ~ 30789829 (+)
G695580 NA non-coding upstream 68710 30740554 ~ 30740779 (+)
G695579 NA non-coding upstream 69325 30739862 ~ 30740164 (+)
G695552 NA non-coding upstream 92743 30716398 ~ 30716746 (+)
G695284 NA non-coding upstream 284613 30524532 ~ 30524876 (+)
G695730 NA non-coding downstream 22914 30901109 ~ 30901445 (+)
G695732 NA non-coding downstream 25138 30903333 ~ 30905627 (+)
G695733 NA non-coding downstream 27562 30905757 ~ 30909773 (+)
G695734 NA non-coding downstream 31664 30909859 ~ 30911517 (+)
G695737 NA non-coding downstream 41049 30919244 ~ 30919510 (+)
G694036 NA other upstream 1016742 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 1871216 28930668 ~ 28939888 (+)
G693207 NA other upstream 2103737 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 2251116 28495104 ~ 28605625 (+)
G692424 NA other upstream 2739261 28069900 ~ 28070228 (+)
G699605 NA other downstream 3249398 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 4576653 35454437 ~ 35462086 (+)
G700685 NA other downstream 4734969 35613164 ~ 35614666 (+)
G700864 NA other downstream 5025854 35904049 ~ 35904698 (+)
G702415 NA other downstream 5822243 36700438 ~ 36700739 (+)
G695679 NA non-coding downstream 1661 30811643 ~ 30811929 (+)
G695680 NA non-coding downstream 2276 30812258 ~ 30812522 (+)
G695686 NA non-coding downstream 13115 30823097 ~ 30823389 (+)
G695689 NA non-coding downstream 16654 30826636 ~ 30827798 (+)
G695691 NA non-coding downstream 27729 30837711 ~ 30837990 (+)

Expression


Co-expression Network