LOC110529773 (LOC106571662)


Basic Information

Item Value
gene id LOC110529773
gene name LOC106571662
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30912131 ~ 30989709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612293.2
TGCACATGACACCCTCGGAAAAGTTGCAGTTGGAGGAATCCGGCGAGGTGTTTTAAATGGACCGTAGACTGTAGCTTAAAGGAAAACTGCACCTGGAGCGACGGAGTTGACGATAGTCCCATCATCCGCACGCTTATTATTCTGCTCTACGAATTTAAGGGGAGGTTTTCGAACGATGTGACATGACTGCTACCCGAATGTAACAATTAGTCTAACCTTGATGAAATCAGATTGCGCTCTTCCGCCGTGTATTAATTGGAACCAGTCGGGTGCGCACAGTTCTGCGGCCATATGTAGATGAATAATTTAACTGAAGAGGATGCTTTAAACGTACATTCAGTAGAACATTGAAGGCAACCCGGAATAGCCCCCAATTAATTTCAAATGCCATGGTAGCTTATTTGCTTAAACGTAAAGGTCAGAATCTGGGGTTTGCGAGATACATGCTGAATTGATTGGAGACCTTCGGAATTGACCGCCCTGTCATTCATTGCCTGTTGTGTAGGCACGGAATTTTCACGCGCTGTTCTAGCAATCCAACAGCTGAACAACATTGTCTAGGTAGCTCATCCAAACTGACCGCCCCACTACTTCGCATCTGCGCCCCGGCCACTTGAAATGAGGACCGCGTCCCGAGCCTGTTCTGTGTGAAGCCGCGAACACGGGCAATTCCTTCCGTCTCTCCCGTCCGCAGTGAGGCAAGGACATTAAGTCCCCTTTGGCCGTGCTGCAGCCATGGACCAGGACGAGAACAAGAGCGTCTCGAAAAAGACCATAATCACAAAGATTTTCAAAGTTcgcaggaggagagagatgctTTTCGTGCAAGTGTGTTTTCTCTGCAGTGTCCTCTGCATGGCATGGAGCATGTCAGTATTGCTGACAAAGACAGGGTACGGAATAACATTAAAAAATGGACACGAGAAGCATGAACATTGGGGAAGGAAGCTCATGGGACATGAACCCGACAACGACAACGAGACCGAGTCGAAGAACTGCACAGAGCCAGCTATCAAGGAGTTCCCTGAAGACATGTTTTCCAACTACGAGCGCAAGAGTGGGGCCGTCCTGCTGCACATCGTGGCGGCCCTCTATATGTTCCTGGCCCTCGCTATAATCTGTGACGACTACTTTGTACCGTCGCTGGAGAAGATCTGTGAGAAACTAGACTTAAGTGAGGATGTTGCCGGAGCCACTTTTATGGCAGCTGGGAGTTCTGCTCCCGAGCTGTTTGCCTCCGTCATTGGTGTCTTCATCACCCACGGTGACGTGGGGGTGGGGACAATCGTCGGCTCAGCGGTCTTCAATATCCTGTGCATCATCGGCGTATGCGGAATATTCGccggacaggttGTAGTGTTGGGTTGGTGGTCTGTTTTCCGAGATTCATTCTACTACGTCTTGTCGATCCTCGCTCTTATTGCGtTCATCTACGATGGGAAGGTAGTGTGGTGGGAGAGCCTGGTGTTGGTGGTCATGTACTGCGGATACATCCTCATCATGAAGTTTAACCAGAGCTTGCAGAAGTTATTCGCGAGCAAAGACGACAAGGACAAGAATCAGGCCAATGGTAACGCAGCGGCCAGCAGCGAGATGCAGGATGTCAAGCCCAGTAAGGCTTACAGTCGTGGGTCTGTGGTCATGGTCGATGAGATGATGCATGCCAACCCTCCCAAGATGCGCTTCCCTGAGGCCGGCCTCCGCATCATGATCACCAGCCATTTTGGACCCAAGACCCGGCTGCGCATGGCCAGTCGCCTCATCATCACTGAGCGTCAGAAGCTGGTCCAGGGTGCCAACGGAGTGGAGACCCAGGTGCTGGAGGGGAAGGTGGATGTTGAGAACGGCAACGTGCCCGAGGACAAGCCTGCAGAGGAGGAGGCCGAAAATGAGACAATCTCCCCCTTTCAtatccctgCGGGCATCAGCAGCAAGTGTAAGTGGCTGATCGCGTGGCCCCTGCTGCTCCTCCTGTTCTTCACCATCCCCAACTGTGCCAAGCCTCGATGGGAGAAGTTCTTTATGctctccttcatcctctccaCTGTCTGGATCGCCGTCTTCTCTTACTTCATGGTCTGGATGGTCACCATCATCGGCTACACCCTTGGCATCCCAGACGTCATTATGGGCATAACTTTCCTGGCAGCGGGCACCAGTGTACCAGACTGCATCGCCAGTCTCATCGTTGCTCGGCAAGGAATGGGTGACATGGCAGTGTCCAACACCATCGGCAGTAATGTGTTTGATATCCTGGTTGGGCTGGGGTTGCCCTGGGCGCTACAGACCATGGCGGTCAACTATGGCTCTGAGGTCATTATCAACAGTCGAGGACTTCTCTACTCTGTGGTGCTGCTGCTGGGTTCTGTGGCTTTAACGGTGGGGGGGATCCACGTGAACCACTGGAAGCTGGATCTGAAGCTGGGTATCTACACGCTGGTCCTCTACGCTGTCTTCCTGTGTTTCTCCATCATGATCGAGTACAACGTGTTCACCTTCGTCAACCTGCCGATGTGCATGGAGGAGTAGCTAGACCCTGCCCACCCACGCTGACCTCTGAACCAGGATGCTCCATCCCCTCAATCCCAGAGAGCAACCAATCACAATCAACCTTCTTCGCCGTCATCCACTACATTACTAACCCTTGTAACTGAatctcctgtctgtctgactccatCTTTCATTGTCATAACAGACCTGTTGACCTCTTGATCTGCTCATTGTCTTTAAATCTGTCTCTCCCTGTGCTTGGACTCGCTTTCCCATGAGGCTTTGTTCTGAGGAGTGGATGGACGCCTCTCCATGCCTCAaacgtcctcctctctctcatccaacAGACAGGACCCAGTGTCAGACTACTCTATTTTCCATTTAACCCCTCCAACTATCTCTAGTCTTACTGTGCTTTCATTAGCATTCCATCAAAGGCTTTAGAATTAAGGGGATCCTACAATACCTACAGTCTCCCTCTCACAACAACCCACACATACctcaggttagggttagtcgTAAACCCCAACATTGACACTCGACCATTtctcccactctcccccatcAAAACCTCTTCTCTTAACCTCCCCACACCACAGATCTACCCAAAGACCCTAGGAAGAAAACACAACCTCACCCTCTCGCCCTcaatctctacctctcccccaaATCCCGCTTGTGCCCCCACCCTTTGGAGGAGGAACTTTTTTTCTACTTCTACTCGTTCTGGCCTGGACCCCTCTGGCATGGTCCAGGCTGTGATAGTTTCCTGTTTCCACATCACTACGTCCCACCCCACTGCACCAGACACTCATCGTCACTTCTCCCCATCACCTCTTAAGAAGGACATTTTGTCAGGAATCTTTATGTAAAATGAGTCTGCGGTCAACTCAAAGCTGAGACTGAAAGAAGAGCGCATATGATGTATATTTGCAGCACTGCACAGTGTTAAACTTGTaaacatgtattattattattttttttttttgtaccgtGTGGGTTTTTGTTTTTCAAACGGGAGTTTAAAAAGGACTCTGAAATATGTAGAGGAGCGCTTGTTGCAATCATAAAGGACGTTGCCTGTTTCACAGTAAGGAATTGCGCACAGAGAAAATGCTTTTCTTGCTTTTTGCTGTAAGGAGATTTGGCCCTCCTCGAAGGCAGGGCGGCTCGCTGATGGAGGCGACTCTATAACCCGTTGTGCTGAAAGTTCAgctgttgtttttttcccctcgaTCCGAGACTGATATCTCTCACACGCACCCTCCAACTGCAAATCACTAAAGAGAGAAACGACTCACTCCGGATCTTGGGGAGATGCGACCGATACGTCACTGAATGGAGGGGGGGGGTACGGTGTCATCTTTGgaatggtgtccatattaggacatctTCGCACAGCAGCATGGAGAAATGTGTATTGTATCACAGATGATCGGAATCGGTCTGTTCTTCTCATCTTCTGTCATTGACCCCCCTTTGACCACTAGGGGGCAATGCTGCCCCCTCACTCTGATCTGTCTGTGCATGGCAGGGGTCTTAAGCAACCACAGCTGTTTGGTTATCAGGGAATATTTGGAGCCTCTGAAGTTCCAGTAGGTGGCGCCATTGGTGGTGTTCGCTCAATGTTAATTACATGTAGATATTGCACTTTAAAACAAGCAAAGCCGTCCTCTCATTCTGAGTCAACTAGTGCTTCCTTtgagtgtatgtatgtacattatatgtgagtgtgcgtgcgtgggGGTGGGGACACACCCGTGAGCACACAACAGTCTGTCTGCAGTGCATTGTACTTACTGCTCCTCAGCAGTACGAAAAGTGATAGGCTGaggagcgtgcgtgcgtgcatgccccccccacccccccacccacttTACAAAAAACGGCAGCTACAAGCTACTGCAATCTGAAACATTTGACATCATGCAAAAACACCTGCGGAGACCGAGTCTACAATAAGCTGGAAAAATTTGCTTTAATAGGGGAGTGTTAATGACGAAAACATGACCTTCCCTTTTTGTGTTGGCAGCAGGTACTTGTATATGCAATCTCAATGTTATGCGTTCTGTGTGTTGGAATTAGAAGGGCCCCTATGGAGGTTGCCATAATGTTAGGGGAACATTTGAGCTCGCTTGTGTGAATGACAGCTGAGGAACCGAGCCAGAGGACATGGATGGAACGTTCTGGAATGGGGGATTCTGTGTGTGCGGGGGAGTCCGACCCTCCTGGCACAAGGGCATTATTCAACCACCAACTCTACCTGAAGAccagaccagaggggaaggacacCAGCCGGGAAGCTGGGAAACCCCCCCTCCAGGCTACAGATGGTTTAGTCCAGTGTACTCTGAACTTTCTGGAAATTCTCCTCCAGGAAAGACAACTTTGTGAGATGAGATCTCATCTGTGCGTGAGTGATGAACCTGAGTAGCAGACATTTTAGGAGTTGGACCCCTAAGCTGCTACTCCCGGGGGAGGTATTTGACTCTAGCTGCGTTCTCTTGGAAGGAGGTGACCACATAGGTCCTCAagactctccccccccccccccccccccctccccatcctcctcatcACATCCCAATGCCATCAATGCTACCCCGATCGTGTGTCCTCCACCCTGCTCGACTGTCAATTTATAGCAGTTACCCTCACTGCACAGTATGCCCCCCAGTTGGTCTTTTCCCTGTAGAAGAGTGTAAAAGTATTCTCTACTAGTGTCATTTGGATTTGATTCTCATTGTTTCCTTCTTGTTAACGATTGTCGCATTCTCAATCTTTTCGTTTGTTGTTATtaactgtacatacagtggggcccgaaattattgacacccttgataaaaatgacagtataaaataaataattcaaatact

Function

NR:

description
sodium/potassium/calcium exchanger 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612293.2 True 5367 mRNA 0.50 17 30912131 30989709

Neighbor

gene id symbol gene type direction distance location
LOC118965507 LOC106569332 coding downstream 142786 30767251 ~ 30769345 (-)
LOC110529771 LOC106571665 coding downstream 224653 30529289 ~ 30687478 (-)
LOC110529226 gphn coding downstream 492519 30292451 ~ 30419612 (-)
LOC110529225 LOC106571669 coding downstream 619790 30263585 ~ 30292341 (-)
LOC100135953 LOC100135953 coding downstream 660740 30243504 ~ 30251391 (-)
LOC110529774 cpsf2 coding upstream 34667 31024376 ~ 31044032 (-)
LOC110529775 LOC106571660 coding upstream 57801 31047510 ~ 31051722 (-)
trnaa-ugc-25 NA coding upstream 80634 31070343 ~ 31070417 (-)
LOC110529227 LOC106571657 coding upstream 109817 31098780 ~ 31120500 (-)
LOC118965648 NA coding upstream 126869 31116578 ~ 31116747 (-)
G696108 NA non-coding downstream 4488 30905767 ~ 30907643 (-)
G696105 NA non-coding downstream 6519 30904598 ~ 30905612 (-)
G696101 NA non-coding downstream 13737 30897492 ~ 30898394 (-)
G696069 NA non-coding downstream 63960 30847385 ~ 30848171 (-)
G696061 NA non-coding downstream 73486 30838409 ~ 30838645 (-)
G696176 NA non-coding upstream 26237 31015946 ~ 31016269 (-)
G696189 NA non-coding upstream 44560 31034269 ~ 31035367 (-)
G696220 NA non-coding upstream 96785 31086494 ~ 31089094 (-)
G696224 NA non-coding upstream 104639 31094348 ~ 31097930 (-)
G696073 NA other downstream 56724 30855107 ~ 30855407 (-)
G696068 NA other downstream 64922 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 849963 30001763 ~ 30062168 (-)
G693665 NA other downstream 1953299 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 2317700 28593341 ~ 28594431 (-)
G696499 NA other upstream 487645 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 668017 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1224777 32214451 ~ 32217572 (-)
G697774 LOC106571626 other upstream 1509090 32498799 ~ 32499410 (-)
G698356 NA other upstream 1999536 32989245 ~ 32990061 (-)

Expression


Co-expression Network