LOC110529774 (cpsf2)


Basic Information

Item Value
gene id LOC110529774
gene name cpsf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31024376 ~ 31044032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612294.2
CCTCTCACATTTTCAGCGGCAAGCTTCCGCTTCATTGAAAGACTTGTTGACAATCGTTGCTGAAAATGCCGTAATGTTAGACTGTTCATGTTATTGATTTCTTTGCTCAGTTTTTGTGAAATAGTATATGGCACTTTATGTATGACAGCTGAGGAGAATGACTTCTATTATCAAACTGACCGCTGTGTCAGGGGTGCAGGAGGAGTCTGCCCTCTGCTACCTGCTGCAGGTGGATGAGTTCCGCTTCCTCCTGGACTGTGGCTGGGATGAGAGCTTCTCTATGGACATTATTGATGCCATGAAAAGGTATGTCCACCAGGTTGATGCGGTGCTCCTCTCCCATCCTGACCCCCTGCACCTGGGGGCTCTGCCCTACGCCGTGGGCAAGCTGGGCCTCAACTGCCCCATCTACGCCACCATCCCTGTCTACAAGATGGGTCAGATGTTCATGTATGACCTGTATCAGTCGCGCAACAACACTGAGGACTTCAACCTGTTCACCCTGGATGATGTAGACTGCGCTTTTGATAAAATCCAGCAGTTGAAGTACTCCCAGATTGTAAATCTGAAAGGGAAAGGACATGGTCTGTCCATCACTCCACTTCCTGCTGGTCACATGATCGGTGGGACCATCTGGAAGATTGTgaaggatggggaggaggagattgTTTACGCAGTGGACTTCAACCACAAGCGAGAGATCCACCTGAATGGGTGTACATTGGAGTCGGTGAGTCGTCCCTCTCTGCTCATCACAGACTCCTTTAACGCTACATACGTGCAGCCGCGTCGCAAACAAAGGGACGAGCAGCTTCTAACCAATGTGATGGAGACGCTACGTGGTGACGGCAATGTGCTGATTGCCGTGGATACGGCGGGCCGTGTGCTTGAGCTGGCTCAACTACTGGACCAGATCTGGAGGACGAAGGACGCCGGTCTCGGGGTCTACTCTCTGGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCCAAGTCTCAGGTGGAGTGGATGAGTGACAAGCTGATGCGTTGCTTCGAGGACAAGCGTAACAACCCTTTCCAGTTCCGCCACCTGTCCCTGTGCCACAGCCTGGCCGACCTGGCTCGCGTGCCCAGCCCCAAGGTTGTGCTCTGCAGCCAGCCCGACCTGGAGTCTGGCTTCTCCCGCGAGCTCTTCATCCAGTGGTGCCAGGAGGCCAAGAACTCAGTGATCCTCACCTACCGCACCACGCCTGGCACCCTGGGCCGCTACCTCATCGATAACCCCGGGGAGAAGATGCTAGACCTGGAGATTAGAAAACGGGTGAAGCTGGAAGGCAGGGAGCTGGAAGAAtacctggagaaagagagaatgaagaagGAAGCTGCCAAAAAACTTGAACAAGAAAAAGAGGTGGATGTGGACTCCAGTGACGAGAGCGACATGGAGGATGACCTGGAGCTGCCGGCGATGGTGAAGACCAAACACCACGACCTGATGATGAAGGGAGACGGCGTCCGCAAGGGCAGCTTCTTCAAACAGGCCAAGAAGTCCTACCCCATGTTCCCCACCCACGAGGAGAGGGTCAAATGGGATGAGTACGGAGAGATCATCAGGCCGGAGGACTTCCTGGTACCAGAGCTCCAGgccacagaggaggagaagaacaaGCTGGAGTCGGGCATGGCCAAAGGAGACGAACCCATGGACCAGGACCTCTCATCCAAAGTACCCACCAAGTGTACCTCCACTACAGAGAACCTGGAGATCAAAGCCAGGGTGACGTACATCGACTACGAGGGGCGTTCAGACGGCGACTCTATCAAGAAGATCATCAATCAGATGAAGCCTCGGCAGCTGGTGATCGTGCACGGCCCTCCCGAGGCCAGCCTGGACCTGGCCGAGTCCTGCAAGGCCTTCACCAAGGACATTAAGGTCTACACACCTAAGCTGCAGGAGACTGTGGACGCCACCAGTGAGACACACATCTACCAGGTGCGGTTGAAAGACTCGCTGGTGAGCTCGCTGCAGTTTTGCCGCGCCAAGGACACGGAGCTGGCGTGGATTGACGGCGTGCTGGACATGCGCGTGGTCAAGGTGGACACAGGCGTGCTGCCCGAGGAGGGCATGATGAAGGGTGAAAAGGGAGCTGGCGAGGAGGCCGTGGAGGATGGCGAGCTGGCCATGGACGTGACCCCTGCTGACGACGGCGCCACAGACCATAGTGTGGTGGCTCAGCAGCGCGCCATGAAGACGCTGTTTGGCGAGGACGTGCGCGAGCCGTCGGAGGAGAGTGACGTCATCCCCACCCTGGAGCCCCTGCCCGCCCACgagATCCCAGGCCACCAGTCGGTGTTCATCAACGAGCCCCGCCTGTCCGACTTCAAGCAGGTGCTGCTGAGGGAAGGCATCCAGGCTGAGTTTGTGGGAGGAGTGCTGGTGTGCAACAACATTGTGGCCGTCCGCAGGACGGAGGCAGGGCGCATCGGCCTGGAGGGCTGCCTGTGTGATGACTACTATAAAATCCGTGAGCTGCTCTATCAGCAGTATGCTGTGGTATAGGAGAGACGAGCAGCCGCGGAGACGGCGTCGGCCGTTACATGATCACACAGAGACATTCCgtttgagaggagagagagtggagagagcggACGATACCCAGAGGACCACAGTGTTCTAGGTGTTCTCCGCACACAGGCTACCTGAGCTCCCCTCGAGCATCTCCAGCTGTTTTACTTCCAACCGCTGTGTTGATTTCTCCTTTTTTACCCCCTTTGTctgtttactgttatttttttttattgtgcgtCTTTCCCCCCGCAGTGAGAGACAGATGGGCTCTCCCTTAGTGACCTCTCCTTGATGCTAACACATGATGTGCGAACCAACGGTAACCCTTAGGGTCTTTTTTACCTCTCCTCAAACTCCCTCAGCTCTGGAGAACATTCACCACACACTCGCTGGAGAGTGCCAACATCGCTTGACATAGGCTGAAAtggtttctgtttttttgttttctaCTACTCATTAAATTCCCTTTTTTTGAACAATTTAA
>XM_036985274.1
CTCACATTTTCAGCGGCAAGCTTCCGCTTCATTGAAAGACTTGTTGACAATCGTTGCTGAAAATGCCGTAATTATGACAGCTGAGGAGAATGACTTCTATTATCAAACTGACCGCTGTGTCAGGGGTGCAGGAGGAGTCTGCCCTCTGCTACCTGCTGCAGGTGGATGAGTTCCGCTTCCTCCTGGACTGTGGCTGGGATGAGAGCTTCTCTATGGACATTATTGATGCCATGAAAAGGTATGTCCACCAGGTTGATGCGGTGCTCCTCTCCCATCCTGACCCCCTGCACCTGGGGGCTCTGCCCTACGCCGTGGGCAAGCTGGGCCTCAACTGCCCCATCTACGCCACCATCCCTGTCTACAAGATGGGTCAGATGTTCATGTATGACCTGTATCAGTCGCGCAACAACACTGAGGACTTCAACCTGTTCACCCTGGATGATGTAGACTGCGCTTTTGATAAAATCCAGCAGTTGAAGTACTCCCAGATTGTAAATCTGAAAGGGAAAGGACATGGTCTGTCCATCACTCCACTTCCTGCTGGTCACATGATCGGTGGGACCATCTGGAAGATTGTgaaggatggggaggaggagattgTTTACGCAGTGGACTTCAACCACAAGCGAGAGATCCACCTGAATGGGTGTACATTGGAGTCGGTGAGTCGTCCCTCTCTGCTCATCACAGACTCCTTTAACGCTACATACGTGCAGCCGCGTCGCAAACAAAGGGACGAGCAGCTTCTAACCAATGTGATGGAGACGCTACGTGGTGACGGCAATGTGCTGATTGCCGTGGATACGGCGGGCCGTGTGCTTGAGCTGGCTCAACTACTGGACCAGATCTGGAGGACGAAGGACGCCGGTCTCGGGGTCTACTCTCTGGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCCAAGTCTCAGGTGGAGTGGATGAGTGACAAGCTGATGCGTTGCTTCGAGGACAAGCGTAACAACCCTTTCCAGTTCCGCCACCTGTCCCTGTGCCACAGCCTGGCCGACCTGGCTCGCGTGCCCAGCCCCAAGGTTGTGCTCTGCAGCCAGCCCGACCTGGAGTCTGGCTTCTCCCGCGAGCTCTTCATCCAGTGGTGCCAGGAGGCCAAGAACTCAGTGATCCTCACCTACCGCACCACGCCTGGCACCCTGGGCCGCTACCTCATCGATAACCCCGGGGAGAAGATGCTAGACCTGGAGATTAGAAAACGGGTGAAGCTGGAAGGCAGGGAGCTGGAAGAAtacctggagaaagagagaatgaagaagGAAGCTGCCAAAAAACTTGAACAAGAAAAAGAGGTGGATGTGGACTCCAGTGACGAGAGCGACATGGAGGATGACCTGGAGCTGCCGGCGATGGTGAAGACCAAACACCACGACCTGATGATGAAGGGAGACGGCGTCCGCAAGGGCAGCTTCTTCAAACAGGCCAAGAAGTCCTACCCCATGTTCCCCACCCACGAGGAGAGGGTCAAATGGGATGAGTACGGAGAGATCATCAGGCCGGAGGACTTCCTGGTACCAGAGCTCCAGgccacagaggaggagaagaacaaGCTGGAGTCGGGCATGGCCAAAGGAGACGAACCCATGGACCAGGACCTCTCATCCAAAGTACCCACCAAGTGTACCTCCACTACAGAGAACCTGGAGATCAAAGCCAGGGTGACGTACATCGACTACGAGGGGCGTTCAGACGGCGACTCTATCAAGAAGATCATCAATCAGATGAAGCCTCGGCAGCTGGTGATCGTGCACGGCCCTCCCGAGGCCAGCCTGGACCTGGCCGAGTCCTGCAAGGCCTTCACCAAGGACATTAAGGTCTACACACCTAAGCTGCAGGAGACTGTGGACGCCACCAGTGAGACACACATCTACCAGGTGCGGTTGAAAGACTCGCTGGTGAGCTCGCTGCAGTTTTGCCGCGCCAAGGACACGGAGCTGGCGTGGATTGACGGCGTGCTGGACATGCGCGTGGTCAAGGTGGACACAGGCGTGCTGCCCGAGGAGGGCATGATGAAGGGTGAAAAGGGAGCTGGCGAGGAGGCCGTGGAGGATGGCGAGCTGGCCATGGACGTGACCCCTGCTGACGACGGCGCCACAGACCATAGTGTGGTGGCTCAGCAGCGCGCCATGAAGACGCTGTTTGGCGAGGACGTGCGCGAGCCGTCGGAGGAGAGTGACGTCATCCCCACCCTGGAGCCCCTGCCCGCCCACgagATCCCAGGCCACCAGTCGGTGTTCATCAACGAGCCCCGCCTGTCCGACTTCAAGCAGGTGCTGCTGAGGGAAGGCATCCAGGCTGAGTTTGTGGGAGGAGTGCTGGTGTGCAACAACATTGTGGCCGTCCGCAGGACGGAGGCAGGGCGCATCGGCCTGGAGGGCTGCCTGTGTGATGACTACTATAAAATCCGTGAGCTGCTCTATCAGCAGTATGCTGTGGTATAGGAGAGACGAGCAGCCGCGGAGACGGCGTCGGCCGTTACATGATCACACAGAGACATTCCgtttgagaggagagagagtggagagagcggACGATACCCAGAGGACCACAGTGTTCTAGGTGTTCTCCGCACACAGGCTACCTGAGCTCCCCTCGAGCATCTCCAGCTGTTTTACTTCCAACCGCTGTGTTGATTTCTCCTTTTTTACCCCCTTTGTctgtttactgttatttttttttattgtgcgtCTTTCCCCCCGCAGTGAGAGACAGATGGGCTCTCCCTTAGTGACCTCTCCTTGATGCTAACACATGATGTGCGAACCAACGGTAACCCTTAGGGTCTTTTTTACCTCTCCTCAAACTCCCTCAGCTCTGGAGAACATTCACCACACACTCGCTGGAGAGTGCCAACATCGCTTGACATAGGCTGAAAtggtttctgtttttttgttttctaCTACTCATTAAATTCCCTTTTTTTGAACAAT
>XM_021612295.2
GAAAGACTTGTTGACAATCGTTGCTGAAAATGCCGTAATGTTAGACTGTTCATGTTATTGATTTCTTTGCTCAGTTTTTGTGAAATAGTATATGGCACTTTATGGTATGTTACTCTATGGCCCATTTTTCTAGGACAATTAGTCTGATGGCCAacttagcatgctagctaacgttagctagcttggaCTGCAAACATACAATAGTATGACAGCTGAGGAGAATGACTTCTATTATCAAACTGACCGCTGTGTCAGGGGTGCAGGAGGAGTCTGCCCTCTGCTACCTGCTGCAGGTGGATGAGTTCCGCTTCCTCCTGGACTGTGGCTGGGATGAGAGCTTCTCTATGGACATTATTGATGCCATGAAAAGGTATGTCCACCAGGTTGATGCGGTGCTCCTCTCCCATCCTGACCCCCTGCACCTGGGGGCTCTGCCCTACGCCGTGGGCAAGCTGGGCCTCAACTGCCCCATCTACGCCACCATCCCTGTCTACAAGATGGGTCAGATGTTCATGTATGACCTGTATCAGTCGCGCAACAACACTGAGGACTTCAACCTGTTCACCCTGGATGATGTAGACTGCGCTTTTGATAAAATCCAGCAGTTGAAGTACTCCCAGATTGTAAATCTGAAAGGGAAAGGACATGGTCTGTCCATCACTCCACTTCCTGCTGGTCACATGATCGGTGGGACCATCTGGAAGATTGTgaaggatggggaggaggagattgTTTACGCAGTGGACTTCAACCACAAGCGAGAGATCCACCTGAATGGGTGTACATTGGAGTCGGTGAGTCGTCCCTCTCTGCTCATCACAGACTCCTTTAACGCTACATACGTGCAGCCGCGTCGCAAACAAAGGGACGAGCAGCTTCTAACCAATGTGATGGAGACGCTACGTGGTGACGGCAATGTGCTGATTGCCGTGGATACGGCGGGCCGTGTGCTTGAGCTGGCTCAACTACTGGACCAGATCTGGAGGACGAAGGACGCCGGTCTCGGGGTCTACTCTCTGGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCCAAGTCTCAGGTGGAGTGGATGAGTGACAAGCTGATGCGTTGCTTCGAGGACAAGCGTAACAACCCTTTCCAGTTCCGCCACCTGTCCCTGTGCCACAGCCTGGCCGACCTGGCTCGCGTGCCCAGCCCCAAGGTTGTGCTCTGCAGCCAGCCCGACCTGGAGTCTGGCTTCTCCCGCGAGCTCTTCATCCAGTGGTGCCAGGAGGCCAAGAACTCAGTGATCCTCACCTACCGCACCACGCCTGGCACCCTGGGCCGCTACCTCATCGATAACCCCGGGGAGAAGATGCTAGACCTGGAGATTAGAAAACGGGTGAAGCTGGAAGGCAGGGAGCTGGAAGAAtacctggagaaagagagaatgaagaagGAAGCTGCCAAAAAACTTGAACAAGAAAAAGAGGTGGATGTGGACTCCAGTGACGAGAGCGACATGGAGGATGACCTGGAGCTGCCGGCGATGGTGAAGACCAAACACCACGACCTGATGATGAAGGGAGACGGCGTCCGCAAGGGCAGCTTCTTCAAACAGGCCAAGAAGTCCTACCCCATGTTCCCCACCCACGAGGAGAGGGTCAAATGGGATGAGTACGGAGAGATCATCAGGCCGGAGGACTTCCTGGTACCAGAGCTCCAGgccacagaggaggagaagaacaaGCTGGAGTCGGGCATGGCCAAAGGAGACGAACCCATGGACCAGGACCTCTCATCCAAAGTACCCACCAAGTGTACCTCCACTACAGAGAACCTGGAGATCAAAGCCAGGGTGACGTACATCGACTACGAGGGGCGTTCAGACGGCGACTCTATCAAGAAGATCATCAATCAGATGAAGCCTCGGCAGCTGGTGATCGTGCACGGCCCTCCCGAGGCCAGCCTGGACCTGGCCGAGTCCTGCAAGGCCTTCACCAAGGACATTAAGGTCTACACACCTAAGCTGCAGGAGACTGTGGACGCCACCAGTGAGACACACATCTACCAGGTGCGGTTGAAAGACTCGCTGGTGAGCTCGCTGCAGTTTTGCCGCGCCAAGGACACGGAGCTGGCGTGGATTGACGGCGTGCTGGACATGCGCGTGGTCAAGGTGGACACAGGCGTGCTGCCCGAGGAGGGCATGATGAAGGGTGAAAAGGGAGCTGGCGAGGAGGCCGTGGAGGATGGCGAGCTGGCCATGGACGTGACCCCTGCTGACGACGGCGCCACAGACCATAGTGTGGTGGCTCAGCAGCGCGCCATGAAGACGCTGTTTGGCGAGGACGTGCGCGAGCCGTCGGAGGAGAGTGACGTCATCCCCACCCTGGAGCCCCTGCCCGCCCACgagATCCCAGGCCACCAGTCGGTGTTCATCAACGAGCCCCGCCTGTCCGACTTCAAGCAGGTGCTGCTGAGGGAAGGCATCCAGGCTGAGTTTGTGGGAGGAGTGCTGGTGTGCAACAACATTGTGGCCGTCCGCAGGACGGAGGCAGGGCGCATCGGCCTGGAGGGCTGCCTGTGTGATGACTACTATAAAATCCGTGAGCTGCTCTATCAGCAGTATGCTGTGGTATAGGAGAGACGAGCAGCCGCGGAGACGGCGTCGGCCGTTACATGATCACACAGAGACATTCCgtttgagaggagagagagtggagagagcggACGATACCCAGAGGACCACAGTGTTCTAGGTGTTCTCCGCACACAGGCTACCTGAGCTCCCCTCGAGCATCTCCAGCTGTTTTACTTCCAACCGCTGTGTTGATTTCTCCTTTTTTACCCCCTTTGTctgtttactgttatttttttttattgtgcgtCTTTCCCCCCGCAGTGAGAGACAGATGGGCTCTCCCTTAGTGACCTCTCCTTGATGCTAACACATGATGTGCGAACCAACGGTAACCCTTAGGGTCTTTTTTACCTCTCCTCAAACTCCCTCAGCTCTGGAGAACATTCACCACACACTCGCTGGAGAGTGCCAACATCGCTTGACATAGGCTGAAAtggtttctgtttttttgttttctaCTACTCATTAAATTCCCTTTTTTTGAACAA

Function

symbol description
cpsf2 Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; mRNA polyadenylation; and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA cleavage and mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF2 (cleavage and polyadenylation specific factor 2).

NR:

description
cleavage and polyadenylation specificity factor subunit 2

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612294.2 False 3041 mRNA 0.55 15 31024376 31044032
XM_036985274.1 False 2969 mRNA 0.55 15 31024380 31044029
XM_021612295.2 True 3100 mRNA 0.55 15 31024381 31043996

Neighbor

gene id symbol gene type direction distance location
LOC110529773 LOC106571662 coding downstream 34667 30912131 ~ 30989709 (-)
LOC118965507 LOC106569332 coding downstream 255031 30767251 ~ 30769345 (-)
LOC110529771 LOC106571665 coding downstream 336898 30529289 ~ 30687478 (-)
LOC110529226 gphn coding downstream 604764 30292451 ~ 30419612 (-)
LOC110529225 LOC106571669 coding downstream 732035 30263585 ~ 30292341 (-)
LOC110529775 LOC106571660 coding upstream 3478 31047510 ~ 31051722 (-)
trnaa-ugc-25 NA coding upstream 26311 31070343 ~ 31070417 (-)
LOC110529227 LOC106571657 coding upstream 55494 31098780 ~ 31120500 (-)
LOC118965648 NA coding upstream 72546 31116578 ~ 31116747 (-)
LOC110529778 LOC106571654 coding upstream 164971 31209003 ~ 31216765 (-)
G696176 NA non-coding downstream 8107 31015946 ~ 31016269 (-)
G696126 NA non-coding downstream 82282 30941880 ~ 30942094 (-)
G696125 NA non-coding downstream 82987 30941182 ~ 30941389 (-)
G696120 NA non-coding downstream 92633 30931520 ~ 30931743 (-)
G696115 NA non-coding downstream 102416 30921670 ~ 30921960 (-)
G696220 NA non-coding upstream 42462 31086494 ~ 31089094 (-)
G696224 NA non-coding upstream 50316 31094348 ~ 31097930 (-)
G696289 LOC106571655 non-coding upstream 157542 31201574 ~ 31204165 (-)
G696073 NA other downstream 168969 30855107 ~ 30855407 (-)
G696068 NA other downstream 177167 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 962208 30001763 ~ 30062168 (-)
G693665 NA other downstream 2065544 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 2429945 28593341 ~ 28594431 (-)
G696499 NA other upstream 433322 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 613694 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1170454 32214451 ~ 32217572 (-)
G697774 LOC106571626 other upstream 1454767 32498799 ~ 32499410 (-)
G698356 NA other upstream 1945213 32989245 ~ 32990061 (-)

Expression


Co-expression Network