XLOC_025772 (eif3g)


Basic Information

Item Value
gene id XLOC_025772
gene name eif3g
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54581987 ~ 54589823 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050640
CTGCAGTCTTCCGCAGGCACAGATGGCGCTGTAGCGTTGCGTGTCCTTTCTCTTGCTCCCGTCCCGCGAAACGCTTCCTCTAGAAGCTCGAGACGACCCGCAAATATGCCGTCGATCGAATTCGACGACTCAAAGCCTAGCTGGGCCGATCAGGTGGAGGAAGAGGGAGATGAAGGTTCACTCCCTTCACCAAAAGAGACCGTCAAGGGTAACATCAAGACTGTCACAGAATACAAAATCGATGACGATGGCCAGAAGTTTAAGATTATCCGGACTTTCAAAATTGAGACACGAAAGGCCTCTAAAGCTGTTGCCAGGAGGAAGAACTGGAAAAAATTTGGCAACTCAGAATATGATGCACCAGGCCCAAATGTTGCCACCACTACAGTGAGTGATGACGTCTTCATGACCTTCATCTCCAGCAAAGAGGATTTGAATGCTCAAGACCAAGATGAGGATCCCATGAACAAGCTGAAAGGACAGAAGATTGTGTCCTGCCGAATCTGTAAGGGGGATCACTGGACCACCCGCTGTCCATACAAAGATACGCTTGGTCCCATGCAGAAGGAACTGGCCGAGCAGTTGGGGCTGTCCACAGGAGAGAAAGAGAAGGCAGCCGAGCCTGAGCCGGCCCAGCCTGTCCAAAACAAGACTGGGAAGTATGTTCCCCCAAGTCTACGGGATGGTGGTACGCGCCGAGGAGAGTCTATGCAGCCTAACCGCAGAGCTGATGATAATGCTACAATCCGTGTGACCAACCTGTCCGAGGACACCAGGGAGACCGATCTGCAAGAGCTTTTCAGGCCTTTCGGCTCCATATCTAGGATCTATTTGGCAAAAGATAAGAACACCGGCCAGTCTAAGGGCTTTGCCTTCATCAGTTTCCACCGCCGTGAGGACGCTGCCAGAGCCATCGCTGGTGTGTCAGGCTTTGGATATGATCATCTCATTCTCAATGTGGAATGGGCAAAACCCTCCAATAACTGAGGAAATTCCATAAATATTCCAGGAGGTTTAGATGTGTTCCCCCAAGTGTAATAAGACCATGAtccaaataaatgcaaattattaaaaca

Function

symbol description
eif3g Predicted to enable RNA binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3G (eukaryotic translation initiation factor 3 subunit G).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040426-1076 Predicted to enable RNA binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3G (eukaryotic translation initiation factor 3 subunit G).

Ensembl:

ensembl_id ENSDARG00000016889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050640 True 1076 mRNA 0.50 10 54581987 54589823

Neighbor

gene id symbol gene type direction distance location
XLOC_025771 p2ry11 coding upstream 4002 54572725 ~ 54577985 (+)
XLOC_025770 ppan coding upstream 14026 54553931 ~ 54567961 (+)
XLOC_025769 NA coding upstream 245348 54332726 ~ 54336639 (+)
XLOC_025768 NA coding upstream 278363 54289678 ~ 54303624 (+)
XLOC_025767 NA coding upstream 297802 54283767 ~ 54284185 (+)
XLOC_025773 icam3 coding downstream 154246 54744069 ~ 54752364 (+)
XLOC_025774 si:ch211-74m13.1 coding downstream 171746 54761569 ~ 54771809 (+)
XLOC_025775 sc:d0202 coding downstream 186294 54776117 ~ 54814530 (+)
XLOC_025776 NA coding downstream 244686 54834509 ~ 54836517 (+)
XLOC_025777 mgrn1b coding downstream 259260 54849083 ~ 54875874 (+)
XLOC_025429 BX649540.1 misc upstream 24332951 30248739 ~ 30249036 (+)
XLOC_025766 NA non-coding upstream 310642 54270703 ~ 54271345 (+)
XLOC_025765 NA non-coding upstream 470015 54111389 ~ 54111972 (+)
XLOC_025787 CT583658.1 non-coding downstream 709220 55299043 ~ 55299158 (+)
XLOC_025788 NA non-coding downstream 796392 55386215 ~ 55387657 (+)
XLOC_025789 NA non-coding downstream 892297 55482120 ~ 55488241 (+)
XLOC_025790 NA non-coding downstream 1057050 55646873 ~ 55654264 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00593453_00601556 EIF3G coding CI01000113 null 593382 ~ 601556 (-)
bowfin (Amia calva) AMCG00008468 eif3g coding CM030126.1 CM030126.1 1891096 ~ 1894227 (+)