LOC110529227 (LOC106571657)


Basic Information

Item Value
gene id LOC110529227
gene name LOC106571657
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31098780 ~ 31120500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611348.2
CTGCTAGGGGTCCTGTCCTCCATTGCAGCCTTCATGGGCCTGATGGCTCTCTTTTTTCTTTACCTCAGCAACAAGCTGTCTGTGGAGAGCACAAGCAACCTGTCATGTCTGGACGACTATAGGCCCGACCAGCAAGACCAGAGCTGCCCAGAACGTGGCTCTGAGGACGATAGTGAGGAGGACAGACCAGGGAGACACTCTGAATCCTCAGCCCAGCACAGAGCCTCAGTCTGGGATAACAGACAGAAACGCAACAGCGACCACAGCAGTGAAGCCTCCATTGGACAAACCAACAATATCCAGCGGATGAGACGGGGCTCCCCCCTCAACGAGAACCAGCCTCCCCCGTACCAGGACGAGGATAGACCGGTCCGGGTGTCTCTCTCGCGGTCGGAGGTAGGGGTTCTGGGGGAGTCGAACCCTGACGGCAATGGTACACGGCGCTCAAGCAAGGCCAGCGTTGACCAGGACACTGCGAGTTACCTCAACAAGGGCTATGATGAGGATGTACCTAGTGACAGCACTGCCGTCCTGGGACCAGAGGATGGTTCACCCTCCCAGCTCCCCGGTGGCTATGAGCCCGAGCCACTGGCTAAGTACGGCACGCTGGACGTGGCCTTCGAGTATGACTCGGGCAAGCAACACCTCGCCGTCACTGTCACTGCGGCAACCGACATCCCCGTGCTCAAACAGACAGGCAACATCGCGTGGCAGgtaCACCTGGTATTACTGCCCACTAAGAAGCAGCGGGCCAAGACGGGGGTGCAGAGGGGGCCGTGCCCAGTGTTCACAGAGACCTTCCGCTTCTCCCGGGTGGAGCAGGAGGCACTGGCGGACCACGCCGTCCGGTTCCGCCTCTACAGCGTCAGGAGGATGAAGAAGGAGAAGGTGTTGGGCGAGAAGGTTTTCTATTTGACTAAACTCAACCTGCAGGGCAAGATGGCGCTGCCCGTTACACTGGAGCCTGGCACTGCACTAATGGGCTGTGGGTCGTTGGTGAGTGTGTCCCGTAGTGCAGGGGCTCTATCCTACCGTTCCACCGGGGACTCCTCCCCAGAAATTCTACTGGGCCTCATCTACAACGCCACCACTGGTAGGCTCTCTGCAGAGGTCATCCAGGGCAGCCACTTCAAAAACACAGCCTCAGACAAACCTCCCAgtggtctgttctGTTGTATGAAACAGTTCATCGGGGGACAACTTTACATCATGAGAGaCACCTATGTGAAGCTGACCATGCTCGACTCCAAGGGCAAGGAGATGTCCAAGTGCAAGACGTCAGTTTGCCGCGGCCAGCCCAACCCCACTTACAAGGAGACCTTTGTCTTCCagGTGGCCCTCTTCCAGCTGTCCGAGGTCTCCCTGGTGGTGTCCGTGTACAGCCGGAGGAGCAGCATGAAGGCCAGGGAGAGGGTGGGCTGGGTGTCCCTGGGGCTCAACAGCACCGGAGAGGAACAGCAGGCCCACTGGAGCCAGATGAAGGAGGCCGGGGGACAGCAGGTGTGCAACTGGCACGCGCTCTTGGAATCTTGAGCAGGTCTTTATGAGAATCACAAGATTTCATCTCGGTGACACAGGAGGAGAAATACAGAGCCAGAGGAAGATTATAGGGTATCTTGATCTCGGTGTTGAAAGGGGATTGGTTCCTTGACCTTCCGTCAGAGATGCAGACGAGGAACCATCTACCAATGCTATGCATATGAACCTGGAATGGGATGTGTGTGAGGGTGCAGCGCTATGAGAGGCATGTGGATTCCACATGGAGTCGCTGTTCATTAAGTGCTGCTTTAAATACCCTTTAATATGTAAAAGAGCCACTTGACCTGAGAAAGACTGACTGGTTCTAAGCAATGACTTCCTGCTCCTGTCAGACTGATCTTTTAATACAACAGCTGATAAACTTCAGTTATGAACTGGTCCTGAAATGGACGAAACTGCTACTGAAATGAACACAGCGGGTCCTGATCCAGTCTCTGATTGATGCCAATTTTGTGTAATTCATTTCCCATATTCTGATCCATAATAATATTTTTTGCATGCAATTGTTTACAGAAGATGATCAAAATACGACCATACATATCTCGTACAATGGACCATTTTCATCCTGAACCGAGGACCAAAGAGTGTGTGGAAGAACAACGACCAAAACAAGCCAGCCCCCTCACATTCTTCTGGAGTTGTActggccatagaaatagaattacaaGAAGGGGAAAAGCCCctcagaccactgcaatttaaATGACACAATCATGGATTCACTCAATATGGCCGAAATGTTAATTCTATTTCTAATGGTACTGACTTCTAATAACACCAGCATCAGTCATTTCTCAAAAGACGCTCACAGCCATTGGTAACAGGTATGATGTTACCATGACTGTTAAAGCCAGCTGGGCCTGTTATGTGCTGTAACAACTATGCTAACAAGCTATGCTTATTTTTACACTTTGTTACATTCACGTGACATTATGCAACATCCATTTGACTGATTTGTCATTTTTATTTTTGGGGTTTCTTTTGACAGCCGTTTCATCTCCCGTTGTAATGAGTGTATTATCTTGTGTGCATGTGTTCAAGAACACAAAATACAAAGTACATCTTCAGAATCACATTTAGCATCATTTGAGAATTTTTGTGGCTCACTGAATCAGACAACTCTGTAGCCAACACCATCCTTATAAAAGTCCCATCACCTTTCGTGtggaagctacagtgccttcagaaagttcacacccctttttccacattttgttgttacagcctgaatattaaatagatttttttgtcactggcctacacacaataccccataatgtcagtggaaattgtaaaaaaaataaaaatagaaaaatgactgaaatatcttgagtcaataagtattcaatccctttatggcaagcctaaaactGTTCAGGAGTACAtttgtgcttaacaagtcacgtgtgtaataatagtgtaacatttttttaatgactacctcatctctgtaccccacacttgcaaagaagggcacattTTGGTAGACAATAATTGAATATCCCTCTGatcatggtgaagttatgaattacactttggatggtgtatcaatacacccagtcactaaagatacaggcgtccttcctaactcag
>TU792479
TTTTAATACAACAGCTGATAAACTTCAGTTATGAACTGGTCCTGAAATGGACGAAACTGCTACTGAAATGAACACAGCGGGTCCTGATCCAGTCTCTGATTGATGCCAATTTTGTGTAATTCATTTCCCATATTCTGATCCATAATAATATTTTTTGCATGCAATTGTTTACAGAAGATGATCAAAATACGACCATACATATCTCGTACAATGGACCATTTTCATCCTGAACCGAGGACCAAAGAGTGTGTGGAAGAACAACGACCAAAACAAGCCAGCCCCCTCACATTCTTCTGGAGTTGTActggccatagaaatagaattacaaGAAGGGGAAAAGCCCctcagaccactgcaatttaaATGACACAATCATGGATTCACTCAATATGGCCGAAATGTTAATTCTATTTCTAATGGTACTGACTTCTAATAACACCAGCATCAGTCATTTCTCAAAAGACGCTCACAGCCATTGGTAACAGGTATGATGTTACCATGACTGTTAAAGCCAGCTGGGCCTGTTATGTGCTGTAACAACTATGCTAACAAGCTATGCTTATTTTTACACTTTGTTACATTCACGTGACATTATGCAACATCCATTTGACTGATTTGTCATTTTTATTTTTGGGGTTTCTTTTGACAGCCGTTTCATCTCCCGTTGTAATGAGTGTATTATCTTGTGTGCATGTGTTCAAGAACACAAAATACAAAGTACATCTTCAGAATCACATTTAGCATCATTTGAGAATTTTTGTGGCTCACTGAATCAGACAACTCTGTAGCCAACACCATCCTTATAAAAGTCCCATCACCTTTCGTGtggaagctacagtgccttcagaaagttcacacccctttttccacattttgttgttacagcctgaatattaaatagatttttttgtcactggcctacacacaataccccataatgtcagtggaaattgtaaaaaaaataaaaatagaaaaatgactgaaatatcttgagtcaataagtattcaatccctttatggcaagcctaaaactGTTCAGGAGTACAtttgtgcttaacaagtcacgtgtgtaataatagtgtaacatttttttaatgactacctcatctctgtaccccacacttgcaaagaagggcacattTTGGTAGACAATAATTGAATATCCCTCTGatcatggtgaagttatgaattacactttggatggtgtatcaatacacccagtcactaaagatacaggcgtccttcctaactcagttgccggagaggaaggaaacagcacagggatttcacaatgaggccaatggtgactttaaaacagttacagagttgaatggctgtgataggagaaaactgaggatggatcaacaacattgtagttactccacaatactaacttaaatgacagagtgaaaagaagaaacgCCTGTacatattcaaaaacatgcatcctgtttgcaacaaggcactaaagtaatactgcaaaaaaaattccaaagcaatgaactttttgtcctgaatacaaagcgttaggTTTGGGGAAAATCactttactgagtaccactctccatattttcaagctcaatggtggctgcatcatgttatgggtatgcttgtaatcaatAAGGACCGGGGAGGTTTCCGGAATGGAACGAAGCCCAggcaaaaatcctagaggaaaacctggttcagtctgcttcaccattcagcaggacaataacctaaaacacaaagccaaatctacactggagttgcttaccaagaagacggtgaatgtccctgagtggccaagttacagttttgaatctacttgaaaatctgaCAAGACCTGAAATTGGTTGTCTAGAAATGGTCAATAACCAatgtgacagagcttgaagactttttaaaagaataatgggtaAACGTTGCACAATCCTGGTGTGGAAAGCCCTTAAGAGATTTACCCATAAAgactcagctgtaatcgctgccaaaggttcttctacaaagtattgactcgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611348.2 False 3132 mRNA 0.49 10 31099526 31120500
TU792479 True 2000 lncRNA 0.39 1 31098780 31100779
Loading

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-25 NA coding downstream 29109 31070343 ~ 31070417 (-)
LOC110529775 LOC106571660 coding downstream 47804 31047510 ~ 31051722 (-)
LOC110529774 cpsf2 coding downstream 55494 31024376 ~ 31044032 (-)
LOC110529773 LOC106571662 coding downstream 109817 30912131 ~ 30989709 (-)
LOC118965507 LOC106569332 coding downstream 330181 30767251 ~ 30769345 (-)
LOC110529778 LOC106571654 coding upstream 88503 31209003 ~ 31216765 (-)
zfp36l1b zfp36l1 coding upstream 172303 31292803 ~ 31298521 (-)
cgrrf1 cgrf1 coding upstream 256092 31376592 ~ 31381078 (-)
LOC110529787 LOC106571648 coding upstream 308024 31428524 ~ 31431727 (-)
LOC110529789 LOC105024319 coding upstream 311892 31432392 ~ 31435370 (-)
G696224 NA non-coding downstream 1596 31094348 ~ 31097930 (-)
G696220 NA non-coding downstream 10432 31086494 ~ 31089094 (-)
G696189 NA non-coding downstream 64159 31034269 ~ 31035367 (-)
G696176 NA non-coding downstream 83257 31015946 ~ 31016269 (-)
G696126 NA non-coding downstream 157432 30941880 ~ 30942094 (-)
G696289 LOC106571655 non-coding upstream 81074 31201574 ~ 31204165 (-)
G696298 NA non-coding upstream 99500 31220000 ~ 31224726 (-)
G696353 NA non-coding upstream 225460 31345960 ~ 31346302 (-)
G696356 NA non-coding upstream 227595 31348095 ~ 31348326 (-)
G696073 NA other downstream 244119 30855107 ~ 30855407 (-)
G696068 NA other downstream 252317 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 1037358 30001763 ~ 30062168 (-)
G693665 NA other downstream 2140694 28958395 ~ 28958832 (-)
G693383 btbd7 other downstream 2505095 28593341 ~ 28594431 (-)
G696499 NA other upstream 356854 31477354 ~ 31478027 (-)
LOC110529793 LOC106571728 other upstream 537226 31657632 ~ 31703525 (-)
LOC110529804 ypel5 other upstream 1093986 32214451 ~ 32217572 (-)
G697774 LOC106571626 other upstream 1378299 32498799 ~ 32499410 (-)
G698356 NA other upstream 1868745 32989245 ~ 32990061 (-)
LOC118965648 NA coding upstream 15799 31116578 ~ 31116747 (-)

Expression

LOC110529227(LOC106571657) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

LOC110529227(LOC106571657) Expression in each Bioproject

Bar chart with 21 bars.
LOC110529227(LOC106571657) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network