XLOC_025773 (icam3)


Basic Information

Item Value
gene id XLOC_025773
gene name icam3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54744069 ~ 54752364 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050641
GACGGTGGGTCATGTGAATGTAAAACTGGAAGTGAAATACCGTGAAATAAGAAGGAGCTACGGAGTTTTAGTTTAGTCAGTTGCTGCTCCCCTAAGAGTACGGGACATTCCAGTAATCTTCATTACAGCTCGTCTACACAAGGGAAGGGGCAGTTCCGCTGATTAAACCGCTGCTCACTCTCACTTTTATTCTCTCAGTGGTCGAAGTGTAACCAGATCTACAACAGTGACAGGACAATACTAAAGCCCAGGACTCGAGCTGAACCTAGTTTGAAAATGCAGAAAGGGTCGTTCTTTCTCGGCAAATCTTCACGGATGTCCCATATAGGACTACTCGGAATTTGTTTTCTCTCACTAGTTGCAGGTGCACTAGAATGTCCTCTTCAAATCAGCCCACAGAGTGTTGTCGTGAGGTACGGTGATTCTGTATCAGTAAACTGCAGCACTTCAGTCACACATGATGGGATGGGATGGGAATCCACTAAGGGAGGAGTGCCCCTGTCCAAAGCCAGTCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGGAGATAGAGCCACCATTCTGCTACATAAACTATGGccaacaacaacaatgtgaagtAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCCATCAGCACTGCGAATCAAGCAATGACAGAGGGAAACCAGTATGAGCTCCAGTGTGACATTCATAATGTGGCTCCTGCTCAGAATCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTTACTGACAACACCAAGAGTCCagtcaataaaataattagaCTCCCGATCCATCCAGACAGAGCTGATGATGGAGCTCAGTACAGATGTGAAGCAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCTCATCCTAAAAACACATCTGAACCTCTCAGCATTACTGTACATTTTAAACCAACCATCCACAAACTGCCCTCCACAGTGTCTGTGGTACGAGGCTATTCAAAGGTGGTAGTTTGTAAATCGGAAGGACATCCAAAACCAACAATCAGCTGGAGTGACGGCACAAACACAGTTAATGGTGAAAACTTTACTATAACAGAGTCCACAGCTGAGAATCTGACCTGCACTGCAACCAATGCCGTCGGCAGCTCCAGCAGATCAGTGACAGTGGTCATTCAAGAGAATATAACGCCTATAATAATCGGCATTGTTTGTGGCATATTGCTGGTCATCTCAGTCATCTTCATCTACATCTACATCACCTGCTACAAAAAAAACAAGATGGGCCATTATAATTTCAAGAAGCCCAAAGCATCTAAAGGACTCTTAGCGCAGCCAGCACAGACCCCATGAAGGAACTCTGTCAGAGCAATGTGATTATGATTCGCTGAGTTTGATTCATCTGCTGAACCTCACAGTCAGATCAGTCAGAATGAAATGTGAAGTGTTGTTGTGTGGACCAGTCTCAAATGTATTAGCAGCAGTGTTACACTTTTTCAGCATTTCTGCATagattactacactgtaaaacccaacagtcaactttataaaAGGAAATGAGTGTccttaactcaaaatgtactgaaagttaattctactcatttgaaaagtgttttgaactcagtgttgaagataatgagtttattaaacacctcattactccaact
>TCONS_00050642
AAAACTGGAAGTGAAATACCGTGAAATAAGAAGGAGCTACGGAGTTTTAGTTTAGTCAGTTGCTGCTCCCCTAAGAGTACGGGACATTCCAGTAATCTTCATTACAGCTCGTCTACACAAGGGAAGGGGCAGTTCCGCTGATTAAACCGCTGCTCACTCTCACTTTTATTCTCTCAGTGGTCGAAGTGTAACCAGATCTACAACAGTGACAGGACAATACTAAAGCCCAGGACTCGAGCTGAACCTAGTTTGAAAATGCAGAAAGGGTCGTTCTTTCTCGGCAAATCTTCACGGATGTCCCATATAGGACTACTCGGAATTTGTTTTCTCTCACTAGTTGCAGGTGCACTAGAATGTCCTCTTCAAATCAGCCCACAGAGTGTTGTCGTGAGGTACGGTGATTCTGTATCAGTAAACTGCAGCACTTCAGTCACACATGATGGGATGGGATGGGAATCCACTAAGGGAGGAGTGCCCCTGTCCAAAGCCAGTCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGGAGATAGAGCCACCATTCTGCTACATAAACTATGGccaacaacaacaatgtgaagtAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCCATCAGCACTGCGAATCAAGCAATGACAGAGGGAAACCAGTATGAGCTCCAGTGTGACATTCATAATGTGGCTCCTGCTCAGAATCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTTACTGACAACACCAAGAGTCCagtcaataaaataattagaCTCCCGATCCATCCAGACAGAGCTGATGATGGAGCTCAGTACAGATGTGAAGCAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCTCATCCTAAAAACACATCTGAACCTCTCAGCATTACTGTACATTTTAAACCAACCATCCACAAACTGCCCTCCACAGTGTCTGTGGTACGAGGCTATTCAAAGGTGGTAGTTTGTAAATCGGAAGGACATCCAAAACCAACAATCAGCTGGAGTGACGGCACAAACACAGTTAATGGTGAAAACTTTACTATAACAGAGTCCACAGCTGAGAATCTGACCTGCACTGCAACCAATGCCGTCGGCAGCTCCAGCAGATCAGTGACAGTGGTCATTCAAGGTAACTATGCATTTGTTTTATACTTGACCTTCAGCTTGCTTTCATGA

Function

symbol description
icam3 Acts upstream of or within cardiac muscle contraction and ventricular cardiac muscle cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system. Used to study dilated cardiomyopathy. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); biliary atresia; inflammatory bowel disease (multiple); liver cirrhosis; and uveitis (multiple). Orthologous to several human genes including ICAM1 (intercellular adhesion molecule 1); ICAM2 (intercellular adhesion molecule 2); and ICAM3 (intercellular adhesion molecule 3).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04090 CD molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-060503-219 Acts upstream of or within cardiac muscle contraction and ventricular cardiac muscle cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system. Used to study dilated cardiomyopathy. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); biliary atresia; inflammatory bowel disease (multiple); liver cirrhosis; and uveitis (multiple). Orthologous to several human genes including ICAM1 (intercellular adhesion molecule 1); ICAM2 (intercellular adhesion molecule 2); and ICAM3 (intercellular adhesion molecule 3).

Ensembl:

ensembl_id ENSDARG00000076144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050641 False 1673 mRNA 0.44 5 54744069 54752364
TCONS_00050642 True 1212 mRNA 0.45 4 54744090 54749171

Neighbor

gene id symbol gene type direction distance location
XLOC_025772 eif3g coding upstream 154246 54581987 ~ 54589823 (+)
XLOC_025771 p2ry11 coding upstream 166084 54572725 ~ 54577985 (+)
XLOC_025770 ppan coding upstream 176108 54553931 ~ 54567961 (+)
XLOC_025769 NA coding upstream 407430 54332726 ~ 54336639 (+)
XLOC_025768 NA coding upstream 440445 54289678 ~ 54303624 (+)
XLOC_025774 si:ch211-74m13.1 coding downstream 9205 54761569 ~ 54771809 (+)
XLOC_025775 sc:d0202 coding downstream 23753 54776117 ~ 54814530 (+)
XLOC_025776 NA coding downstream 82145 54834509 ~ 54836517 (+)
XLOC_025777 mgrn1b coding downstream 96719 54849083 ~ 54875874 (+)
XLOC_025778 aanat2 coding downstream 135418 54887782 ~ 54893706 (+)
XLOC_025429 BX649540.1 misc upstream 24495033 30248739 ~ 30249036 (+)
XLOC_025767 NA non-coding upstream 459884 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 472724 54270703 ~ 54271345 (+)
XLOC_025765 NA non-coding upstream 632097 54111389 ~ 54111972 (+)
XLOC_025787 CT583658.1 non-coding downstream 546679 55299043 ~ 55299158 (+)
XLOC_025788 NA non-coding downstream 633851 55386215 ~ 55387657 (+)
XLOC_025789 NA non-coding downstream 729756 55482120 ~ 55488241 (+)
XLOC_025790 NA non-coding downstream 894509 55646873 ~ 55654264 (+)

Expression


Co-expression Network