XLOC_025774 (si:ch211-74m13.1)


Basic Information

Item Value
gene id XLOC_025774
gene name si:ch211-74m13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54761569 ~ 54771809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050643
CAGTGGTTTCCTGCGATAAATGAAGGGTCCGAGACCGTGTGGTGTGTTTCTGATCGAACAATTAAACGCTGTTTGTTGGTTAAAAGCGGTGTCGATATATTAGCCGCTTAAATGATGGCGCGGCGCGAGCGGATACTCTTCTTCAAGTGTCTAATTTTGGATCTGTTGTGGCGGCTGTTTGCGTTGGATGACTTTTCCATCAGCGCTGTGAATTACATTGAACCAATGATAGAGGGAAACCAGTATGAGCTCCAGTGTGACGTTTACAATGTGCCTGCGGCTCAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGACTCAAACCAACTTCACTAACACATTTGAGAGTCCAGTCAATAAAACCTTTATACTCCTGATCCATCCAAAACGATATGACGATGGAGCTCAGTACAAGTTTGAGCTGAAACCTTTGGAAATATCAAAGTCTGTCAACATTACTGTAAATTTTAAACCGGTCATCAATGAGACCATACTGCCCTCTGTGGTGCCTGTGTTTCGAGGTTATCCAGTGAATCTTTCTTGTATAGCTGACGGAAAGCCAAAACCAATAATCAGCTGGAAGCACAAAAATGGAATCATTTACAGGGAATATCTTACCGTAACAGAGTCCACGCCTGAGAACGTGGTGTGCGTTGCAAACAATTCCATTGACGCCGTCCGCAGAGAAGTAAAAGTGATCTTAAAAGAGGATTACCTGCCCTTAATAGCAGGACTTATTGCTATCACAGTGGCGTTCATCtcagtcatcttcatcttcatctacTCGATCTACTACAAAACTGCCAAGATGGGCCGCTATAGCCTGAAGGATGCCAAGCCTAGTGCGCAAAATGGAAACATAGCACAGAATGGCAGAGACAACTCTATCCCTATGAAGAAGCTCTCTCAGAGCAATATCCTAGCGTAACTTGTGCACCTCTGGCTTTGCTGGATCTGCTGAGCCTGAATGTCCACAATGGGATTTTTACACTGGAAGTCTCTTGGCCTCTATTTTTATGTGGCTAGTTTCTTCAtggctccatttttttttttattttacagattagtGGTTCATTAATTTCACCAAAGACCCAGAAGTTTCACAAAAATGCTACTTTTAAGCTTCATGCTGTGGACCAGAGGAAAATATCTttcgccccattcacatggggcttcagcatcaGCGGTTGACTGAGGGCGTGTC
>TCONS_00050644
ATGATGGCGCGGCGCGAGCGGATACTCTTCTTCAAGTGTCTAATTTTGGATCTGTTGTGGCGGCTGTTTGCGTTGGATGACTTTTCCATCAGCGCTGTGAATTACATTGAACCAATGATAGAGGGAAACCAGTATGAGCTCCAGTGTGACGTTTACAATGTGCCTGCGGCTCAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGACTCAAACCAACTTCACTAACACATTTGAGAGTCCAGTCAATAAAACCTTTATACTCCTGATCCATCCAAAACGATATGACGATGGAGCTCAGTACAAGTTTGAGCTGAAACCTTTGGAAATATCAAAGTCTGTCAACATTACTGTAAATTTTAAACCGGTCATCAATGAGACCATACTGCCCTCTGTGGTGCCTGTGTTTCGAGGTTATCCAGTGAATCTTTCTTGTATAGCTGACGGAAAGCCAAAACCAATAATCAGCTGGAAGCACAAAAATGGAATCATTTACAGGGAATATCTTACCGTAACAGAGTCCACGCCTGAGAACGTGGTGTGCGTTGCAAACAATTCCATTGACGCCGTCCGCAGAGAAGTAAAAGTGATCTTAAAAGGTatatatttagcatgttttggcTTACATTTCCAACCTTAA

Function

symbol description
si:ch211-74m13.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ICAM2 (intercellular adhesion molecule 2) and ICAM3 (intercellular adhesion molecule 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-12 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ICAM2 (intercellular adhesion molecule 2) and ICAM3 (intercellular adhesion molecule 3).

Ensembl:

ensembl_id ENSDARG00000094952

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050643 False 1212 mRNA 0.44 4 54761569 54771809
TCONS_00050644 True 645 mRNA 0.43 3 54761680 54767938

Neighbor

gene id symbol gene type direction distance location
XLOC_025773 icam3 coding upstream 9205 54744069 ~ 54752364 (+)
XLOC_025772 eif3g coding upstream 171746 54581987 ~ 54589823 (+)
XLOC_025771 p2ry11 coding upstream 183584 54572725 ~ 54577985 (+)
XLOC_025770 ppan coding upstream 193608 54553931 ~ 54567961 (+)
XLOC_025769 NA coding upstream 424930 54332726 ~ 54336639 (+)
XLOC_025775 sc:d0202 coding downstream 4308 54776117 ~ 54814530 (+)
XLOC_025776 NA coding downstream 62700 54834509 ~ 54836517 (+)
XLOC_025777 mgrn1b coding downstream 77274 54849083 ~ 54875874 (+)
XLOC_025778 aanat2 coding downstream 115973 54887782 ~ 54893706 (+)
XLOC_025779 mpg coding downstream 259876 55031685 ~ 55043150 (+)
XLOC_025429 BX649540.1 misc upstream 24512533 30248739 ~ 30249036 (+)
XLOC_025768 NA non-coding upstream 457945 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 477384 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 490224 54270703 ~ 54271345 (+)
XLOC_025765 NA non-coding upstream 649597 54111389 ~ 54111972 (+)
XLOC_025787 CT583658.1 non-coding downstream 527234 55299043 ~ 55299158 (+)
XLOC_025788 NA non-coding downstream 614406 55386215 ~ 55387657 (+)
XLOC_025789 NA non-coding downstream 710311 55482120 ~ 55488241 (+)
XLOC_025790 NA non-coding downstream 875064 55646873 ~ 55654264 (+)

Expression


Co-expression Network