LOC110529230 (LOC106571642)


Basic Information

Item Value
gene id LOC110529230
gene name LOC106571642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31550399 ~ 31573573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985288.1
TTTTGTAGGACGGCACACATGACAAGGTGTATTAGACAATGCCTTGCCCGTCAAAAATGCTAGCAATCCCGACTTCTTCATGCTGAACTTTGGCTGGCCTACGCCTCATCGATTTGGAGTGTTGTCATAAGAATACGCCAGCTCGCACTACCATGAAAAAGAGCGTTAGAGACGCACGCGCAGCGCGACCGTTGGATACAATAGGCTTGCACAGCCCTGCTGAAGTCTTTGCTGCAGCGGTCAAGAGAGCAATTATTGAACATGTAATCGTCAAGTTCGTCAACGCTCATCGATTTGGAGTGTTGTCATAAGAATACGCCAGCTCGCACTACCATGAAAAAGAGCGTTAGAGACGCACGCGCAGCGCGACCGTTGGATACAATAGGCTTGCACAGCCCTGCTGAAGTCTTTGCTGCAGCGGTCAAGAGAGCAATTATTGAACATGTAATCGTCAAGTTCGTCAACGCTGTTGGAGCTCCGACTCCTCCTGCGTTTTGTCGTTGTTTACAATAAAAAAAAGGACAGGCGTGGACTGTGGTGCAACGAGCAATAGTGGGTGTGCGTTTTGCTCTTGTTCCTACTAGAGTCTGTTGCGGGGAGAGGGGAGCTCATAATTACCTTTTTACCCGGGTGTGCACCTCGCTCTCACTGACAAGAGCAAAAGAAGACACGGATGATGTGTTTTTACTCCCTACCGTTCTCTATTCTCTCTCGGTTAAAAACAAAGGATTCAATAGAAAGAGCGTTGAAAGATTTTACATAAAGACAAGGCTTTTTTCTTTCCAGTCAGTTGTTTTCGGCAAGGGTTTGGTCCATTGTGGCAAACCGAAAATCAAGATGAAATTTCCCACGGAGAACCCAAGAAAACCAGGGAATCCCAACCCTACGCCAGTGGCGGTCCAGACCAACCTGTTCCCCCCTAAGAAGGTCCAGCCAGGCATGATGAGTGCCAGCCTGGTCCAGGCCAGTGTGGCCACCATGCAGAACCCCATGGGCTGCACCGTGCCACGGCTCTCTCCATCGCGACCTGCCAGCATGGTGGCCAGCATGGAGGCGGTGGGCGAGGATGGCTCGCCCCTTTTCACGGTCATGAAGTGGAAGACCGTGGTGGCGgtgtttgtggtggtggttgcCTATCTGGTGGGGGGAGGCCTGATGTTCCGGGCCCTGGAGCAGCCTTTCGAGAGCAACCAGAAGGTGACCATCACCGCAGAGAAGGCGGCGTTCCTGCAGAAGCACCCCTGTGTCTCACCGGCGGAGCTGGAGGTGCTTATCAAGCACTCTGTAGATGCAGTGAATGCTGGGGTCAGCCCGATAGGAGACACATCCTATAACTCCAGCCACTGGGACCTGGGCAGTGCCTTTTTCTTCGCTGGAACCGTCATCACAACCATAGGATATGGTAACATTGCTCCCAGCACTGAGGGCGGGAAGATTTTCTGTATCCTATATGCAATATTTGGCATCCCTCTGTTTGGGTTCCTGCTAGCCGGTGTGGGGGACCAGCTAGGGACCATATTCGTGAAAAGCATCGCCAAGGTGGAGAAAATGTTCCGGcATAAACAGAACCAGATCAGCCAGACCAAGATCCGAGTGGCCTCCACGTTGCTCTTCATCCTGGCGGGTTGTATCCTCTTTGTCACCATTCCAGCAGTCATCTTCAAACACATAGAAGGCTGGACTGGACTGGAGGCCATCTACTTTGTTGTCATCACTCTGACAACTATCGGAATAGGAGACTATGTGGCAGGAGGGGACCGGAGGGTCGTGTATCGTAATTGGTATAGACCTCTGGTGTGGTTCTGGATTCTGGTGGGGTTGGCCTATTTTGCTGCTGTACTGAGCATGATTGGTGACTGGCTGAGGGTCCTGTCCAAGAAGACAAAAGAGGAGGTTGGAGAGATCAAGGCCCACGCAGCCGAGTGGAAGGCCAACGTGCGCGCCGAGTTCCGGGAGACGCGGCGACGCCTGAGTGTGGAGGTCAGCGACAAGCTCCAGCGGACCGCCACCATCCGCAGCATGGAGCGCCGCCAGCTGGGCCTGGACCAGTGGGCCGTCTCCACGGACATGCTCTCCCCGGAACGCCGTGCCGCCTTCAACAGTCTGGACACCAACCCCTACAAGACCTCATCTCAGGAGAGCATCGACATGAAACTCAACAACCTGCGTCTAAGGGGGGCAGAGTGTGATCCGCGCCGGTCCGAAAGTGTGGCCTCCTCAGACGACAACATCTTTAATCGCCTGGGTTCCGTCACCAAGCTGGCCAAGAGAAACAAGAACCGCGAGCTGAAGAAGAATATCCCAGATGAGCTACAATGCAGGCCCTTTAGTACTCCGCCTATGGAGATGGggaagagaaaggaggaagaggaggaggaggaggaggaggaagatgaggggtTAGACAAAAAGTTCAACACCAGCATGTCCGATCTGCCGCTGTTCGTCGAAGTGTGCAAACCCCAGAATGGTTTCACAGTACCATTCATACCACTTCAGACCAAAGAAAAAAAGACTGAGGGGGAAACACTTCAACTTGAAGAAAAGGAGCTGCGTATCCAGATGGATCCTTAAAAATGTTGGTTGTTCCTCTGAGGTAAAGGATGTTTTAAACGTCACCACCATATGTGCCTTACATTTCTGTCACGCCTTTGTGTGCTTGATATTGGGGGAACGGTTGTGTCCCTGTGTGCTATGTAATGTTATTCAATATTCACTGTGCCCTAATAACCTGAAGGAAAGACATTAACCTCATACGTTTCTACAATCACCTGgtaaaatattttttagatttgAGGTTCTTGTGGTACAGAACAACCAAAAATATGGTTTATTTGGAGTGAAAGACAAGATGGCTGCTATTCAGAAGAGTCGATAATAAAGCAAGTAAGATGCTTTGATGAGTCTGACTTTTATGTACGTAGTGGACTTCGACGAGACGGTGCTGCTCCTAAATACACATCCGAGGTCATTTTAGGACAAGAGAACTGAGCTGCTGAGAATAGAGCAACAATTGAATAAGAGCAACAACTGGAGACTCACCTGGATTTGGTTATTGTGAAATGTACGACTTTGTTCTCATTCCGTCACGACACATGAACTCTGAAAATTGATGAAAAAAGttataaaaaacaaacacaattttGTCTGTGCATGGTCCTTGAGCTAAACTGTCTAGAAGGTGTGTGATTACGCTATTAAG

Function

NR:

description
potassium channel subfamily K member 10-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04920 KCNK10, K2P10.1; potassium channel subfamily K member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985288.1 True 3202 mRNA 0.50 7 31550399 31573573

Neighbor

gene id symbol gene type direction distance location
stxbp6l LOC106571649 coding upstream 147835 31394194 ~ 31402564 (+)
ddhd1b LOC106571651 coding upstream 157325 31381107 ~ 31393074 (+)
psmc6 prs10 coding upstream 173811 31368752 ~ 31376588 (+)
LOC110529782 LOC106571730 coding upstream 206534 31339232 ~ 31343865 (+)
rad51b rad51b coding upstream 242937 31220155 ~ 31307462 (+)
LOC110529794 LOC106608176 coding downstream 377519 31951092 ~ 32110879 (+)
LOC118965508 NA coding downstream 561623 32135196 ~ 32141382 (+)
LOC110529798 LOC106571640 coding downstream 579128 32152701 ~ 32156250 (+)
LOC110529799 LOC106571639 coding downstream 589748 32163321 ~ 32166068 (+)
LOC110529801 LOC106571636 coding downstream 598639 32172212 ~ 32193704 (+)
G696476 NA non-coding upstream 11060 31534369 ~ 31539339 (+)
G696427 NA non-coding upstream 66503 31483657 ~ 31483896 (+)
G696423 NA non-coding upstream 71497 31478666 ~ 31478902 (+)
G696000 NA non-coding upstream 189794 31360356 ~ 31360605 (+)
G695999 NA non-coding upstream 190857 31359155 ~ 31359542 (+)
G696552 NA non-coding downstream 7783 31581356 ~ 31581565 (+)
G696563 NA non-coding downstream 15496 31589069 ~ 31589536 (+)
G696591 NA non-coding downstream 36606 31610179 ~ 31610397 (+)
G696600 NA non-coding downstream 41713 31615286 ~ 31615534 (+)
G696622 NA non-coding downstream 54030 31627603 ~ 31627980 (+)
G694036 NA other upstream 1757652 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 2612126 28930668 ~ 28939888 (+)
G693207 NA other upstream 2844647 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 2992026 28495104 ~ 28605625 (+)
G692424 NA other upstream 3480171 28069900 ~ 28070228 (+)
G699605 NA other downstream 2554020 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3881275 35454437 ~ 35462086 (+)
G700685 NA other downstream 4039591 35613164 ~ 35614666 (+)
G700864 NA other downstream 4330476 35904049 ~ 35904698 (+)
G702415 NA other downstream 5126865 36700438 ~ 36700739 (+)

Expression


Co-expression Network