LOC110529793 (LOC106571728)


Basic Information

Item Value
gene id LOC110529793
gene name LOC106571728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31657632 ~ 31703525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612326.2
cacactcacacagaaacacacggcTGTTGCGCTTTTTCCCTCTCTGTAAGGTTGCCGTATGTTCCAATACAATAGTCGCCTACTCGGCTACGCCACTTGCATACGCTATTAACGTTGGCTGGATCTGAGAATGTAGATGGGAAAAACGTTCTAATTACATTTTGGAGAATACTAGGGCGACTCGACACTATTTCAAGATAGTCAACGGTGTACTGTTCTCACACGCGTAACACAATGGATCTCTCATTTATGGCTGCGCAGTCTGTCATGGCGGGAGCCTTCATGGACTCGTCACCCAACGATGACTACAGCACGGACCACTCCCTCTTCAACTCCTCAGCCAGCGTCCACGCGGCCTCCATGGCAGCCCATGACCAGCCGGAGAGGGAGCCCATGTCCCGCGACGCCATCTGGCTTTGGATTGCCATCACCGCCACCATTGGGAACATTGTGGTCGTGGGAGTGGTGTACGCCTTCACTTTCTGAGTGGTGGGAGCCATGATAAAGTGTTGCCAGCAGGAGGAAGTTGCAGCACAAGATATTTGAACATAAGCTCAGAAACTTGAGAGCGACATAATCTCAGAACTCCACAGCAGCCAATAACCACCATGAAAGGCTACACTGATACAGAGGAGTGAATGATTATTGCATTGACATCTTGTCCATGCTTTTGAAAGACAAGggacaaatacaaatacagaATTGAGTATGTGTAATATGTTGGTAATTTTACTGCAGCCAAAGgtaaaaatatgaaatattttgtACGTAAGTTCTGTTGATTTTACGTAAAAATGTTAACATTTCTGATGAAGCTTTAAATATTGAACGGATTCTAGAAAATAGAATACAGTGTTGTATAGTCAACTCTGAATAACCTCTGAGCTAATTGGTCAATTCTGAAATCACCTAAAGGACGTACAATATTCCTACAGAACCTTTGTAACGTGCCAATTGAAGCGTTTGGAGATCATTGTATGGAAAGTAACACTGATATGTTTTTATCTTCAAAGCATTACTCCACAGAGGTCACTGTATTCTAAAGACATCTGCCCAAAGTTAGGAGTTTATGACAAACATTCTAGAAACAGAATGCCTAATGATCTTAGATTGATTTACTTACCCCATGAAAATATAGTTCACCTGACACTATCGGTTTTGGATCAAGTAAACCCCCCTTTTCATCCTAAGTGAGCCTTGAGTGCTGAATAGACAATCCTTTCCGAGCAAATTCATATCAAATAAAGTATGGGTACACTAAAACTATTTCCCTTAAACACCCCTATCAGACCTCAAATCCATATGAACGAGATGTACGATTTACAGAACTTGATGTTCACTGTGACCGCTTGTTATGTTTGTTTCCATTCTGTATAGCAATCCACTTTTCACAGATATTTACATGTGGAAACCAGATTTATCACGCTTAGAACTCACTTGGATCCAAGCCTCTTGATGTGACTGCTGTAACCATAACCATTTTTATGTCGGTCTGAATGTATATTTGGATATAAGATTATCTTTCTTCCTCTTTACAGTTGCTCAACACATCGTAACCCAAACTGCATTCCAAGCCAAATACTCAACAAAAgtataaaggcaacatgtaaagtgttggtcccatgtttcatttgttgaaataaaagattccagaaatgttccatataca
>XM_021612327.2
GAAGGGAAGGGAGTTTGGTTTGCATGGTAAATTCCTTCTCTATTCCTCACACATATCATACTAATCTCAGTGTGTTGATGGTGTGTGTTGAAGGAGGAGAAGACCCCATGAAGACCAGCAGACCTCAGGAAGACCCGTGTAGACTCCTGCGGACCCCAACGAAGACTAGCCGTCACTAAGTTGTCAGCTACGGAGATCCAAATAAAGAATAAACAGGATTataatttgcagtggtctgaaagTCTCATGCTGTTAGGCTAAGGAAATGAGGCTAAGGACGGACAAGAAAGAGGAAGAGCCCAATCGGAAGTATACGTCTGACTTTTCACCTCTTTACCTCTTCTATCTCCCAATTTCTCCTCTTTTCAGTCATCTCTCCTCATATCTACATCTCTCCGCTCTAGTAACCCCTCCTTTCCTCACCTTTCCACCAATCTTCTCACCCGTCATTTTAATCTCATCAACTGTGCTCTCTTCacctcccctctcatcctccctttatctcccctgtcctcctcttttcctcccctctgCTCTTATCCTCGTTTCATCTACTCACGACAGGATGAGAGGGGCCTTTGTCTCTGAGGACCATTGGGTCTTTTGTGGCATCACTCAGAGGCAGACTTAGACACATCTTCCTGATGCTGCGTGAGTCTGTCATGGCGGGAGCCTTCATGGACTCGTCACCCAACGATGACTACAGCACGGACCACTCCCTCTTCAACTCCTCAGCCAGCGTCCACGCGGCCTCCATGGCAGCCCATGACCAGCCGGAGAGGGAGCCCATGTCCCGCGACGCCATCTGGCTTTGGATTGCCATCACCGCCACCATTGGGAACATTGTGGTCGTGGGAGTGGTGTACGCCTTCACTTTCTGAGTGGTGGGAGCCATGATAAAGTGTTGCCAGCAGGAGGAAGTTGCAGCACAAGATATTTGAACATAAGCTCAGAAACTTGAGAGCGACATAATCTCAGAACTCCACAGCAGCCAATAACCACCATGAAAGGCTACACTGATACAGAGGAGTGAATGATTATTGCATTGACATCTTGTCCATGCTTTTGAAAGACAAGggacaaatacaaatacagaATTGAGTATGTGTAATATGTTGGTAATTTTACTGCAGCCAAAGgtaaaaatatgaaatattttgtACGTAAGTTCTGTTGATTTTACGTAAAAATGTTAACATTTCTGATGAAGCTTTAAATATTGAACGGATTCTAGAAAATAGAATACAGTGTTGTATAGTCAACTCTGAATAACCTCTGAGCTAATTGGTCAATTCTGAAATCACCTAAAGGACGTACAATATTCCTACAGAACCTTTGTAACGTGCCAATTGAAGCGTTTGGAGATCATTGTATGGAAAGTAACACTGATATGTTTTTATCTTCAAAGCATTACTCCACAGAGGTCACTGTATTCTAAAGACATCTGCCCAAAGTTAGGAGTTTATGACAAACATTCTAGAAACAGAATGCCTAATGATCTTAGATTGATTTACTTACCCCATGAAAATATAGTTCACCTGACACTATCGGTTTTGGATCAAGTAAACCCCCCTTTTCATCCTAAGTGAGCCTTGAGTGCTGAATAGACAATCCTTTCCGAGCAAATTCATATCAAATAAAGTATGGGTACACTAAAACTATTTCCCTTAAACACCCCTATCAGACCTCAAATCCATATGAACGAGATGTACGATTTACAGAACTTGATGTTCACTGTGACCGCTTGTTATGTTTGTTTCCATTCTGTATAGCAATCCACTTTTCACAGATATTTACATGTGGAAACCAGATTTATCACGCTTAGAACTCACTTGGATCCAAGCCTCTTGATGTGACTGCTGTAACCATAACCATTTTTATGTCGGTCTGAATGTATATTTGGATATAAGATTATCTTTCTTCCTCTTTACAGTTGCTCAACACATCGTAACCCAAACTGCATTCCAAGCCAAATACTCAACAAAAgtataaaggcaacatgtaaagtgttggtcccatgtttcatttgttgaaataaaagattccagaaatgttccatataca
>TU792983
TACAATAGTCGCCTACTCGGCTACGCCACTTGCATACGCTATTAACGTTGGCTGGATCTGAGAATGTAGATGGGAAAAACGTTCTAATTACATTTTGGAGAATACTAGGGCGACTCGACACTATTTCAAGATAGTCAACGGTGTACTGTTCTCACACGCGTAACACAATGGATCTCTCATTTATGGCTGCGCAGTCTGTCATGGCGGGAGCCTTCATGGACTCGTCACCCAACGATGACTACAGCACGGACCACTCCCTCTTCAACTCCTCAGCCAGCGTCCACGCGGCCTCCATGGCAGCCCATGACCAGCCGGAGAGGGAGCCCATGTCCCGCGACGCCATCTGGCTTTGGATTGCCATCACCGCCACCATTGGGAACATTGTGGTCGTGGGAGTGGTGTACGCCTTCACTTTCTGAGTGGTGGGAGCCATGATAAAGTGTTGCCAGCAGGAGGAAGTTGCAGCACAAGATATTTGAACATAAGCTCAGAAACTTGAGAGCGACATAATCTCAGAACTCCACAGCAGCCAATAACCACCATGAAAGGCTACACTGATACAGAGGAGTGAATGATTATTGCATTGACATCTTGTCCATGCTTTTGAAAGACAAGggacaaatacaaatacagaATTGAGTATGTGTAATATGTTGGTAATTTTACTGCAGCCAAAGgtaaaaatatgaaatattttgtACGTAAGTTCTGTTGATTTTACGTAAAAATGTTAACATTTCTGATGAAGCTTTAAATATTGAACGGATTCTAGAAAATAGAATACAGTGTTGTATAGTCAACTCTGAATAACCTCTGAGCTAATTGGTCAATTCTGAAATCACCTAAAGGACGTACAATATTCCTACAGAACCTTTGTAACGTGCCAATTGAAGCGTTTGGAGATCATTGTATGGAAAGTAACACTGATATGTTTTTATCTTCAAAGCATTACTCCACAGAGGTCACTGTATTCTAAAGACATCTGCCCAAAGTTAGGAGTTTATGACAAACATTCTAGAAACAGAATGCCTAATGATCTTAGATTGATTTACTTACCCCATGAAAATATAGTTCACCTGACACTATCGGTTTTGGATCAAGTAAACCCCCCTTTTCATCCTAAGTGAGCCTTGAGTGCTGAATAGACAATCCTTTCCGAGCAAATTCATATCAAATAAAGTATGGGTACACTAAAACTATTTCCCTTAAACACCCCTATCAGACCTCAAATCCATATGAACGAGATGTACGATTTACAGAACTTGATGTTCACTGTGACCGCTTGTTATGTTTGTTTCCATTCTGTATAGCAATCCACTTTTCACAGATATTTACATGTGGAAACCAGATTTATCACGCTTAGAACTCACTTGGATCCAAGCCTCTTGATGTGACTGCTGTAACCATAACCATTTTTATGTCGGTCTGAATGTATATTTGGATATAAGATTATCTTTCTTCCTCTTTACAGTTGCTCAACACATCGTAACCCAAACTGCATTCCAAGC

Function

NR:

description
PREDICTED: uncharacterized protein C14orf132-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612326.2 False 1669 mRNA 0.41 2 31657632 31679802
XM_021612327.2 False 2064 mRNA 0.42 2 31657632 31703525
TU792983 True 1508 TUCP 0.41 2 31657726 31679735

Neighbor

gene id symbol gene type direction distance location
LOC110529792 LOC106571729 coding downstream 51441 31602683 ~ 31606191 (-)
LOC110529791 LOC106571644 coding downstream 153642 31486817 ~ 31503990 (-)
LOC110529790 LOC106571645 coding downstream 199385 31453334 ~ 31458247 (-)
LOC110529789 LOC105024319 coding downstream 222262 31432392 ~ 31435370 (-)
LOC110529787 LOC106571648 coding downstream 225905 31428524 ~ 31431727 (-)
LOC110529796 LOC106571727 coding upstream 429158 32132683 ~ 32135194 (-)
LOC110529804 ypel5 coding upstream 510926 32214451 ~ 32217572 (-)
bpnt1 bpnt1 coding upstream 565570 32269095 ~ 32278234 (-)
LOC110529808 LOC106571628 coding upstream 582533 32286058 ~ 32287169 (-)
LOC110529806 LOC106571627 coding upstream 585539 32289064 ~ 32301293 (-)
G696662 NA non-coding downstream 1180 31655999 ~ 31656452 (-)
G696659 NA non-coding downstream 3025 31654400 ~ 31654607 (-)
G696649 NA non-coding downstream 14712 31642607 ~ 31642920 (-)
G696640 NA non-coding downstream 19260 31638140 ~ 31638372 (-)
G696639 NA non-coding downstream 22013 31635324 ~ 31635619 (-)
G696920 NA non-coding upstream 140198 31843723 ~ 31843932 (-)
G696932 NA non-coding upstream 148021 31851546 ~ 31851856 (-)
G696948 NA non-coding upstream 158258 31861783 ~ 31861999 (-)
G697011 NA non-coding upstream 202136 31905661 ~ 31905982 (-)
G697511 NA non-coding upstream 378679 32082204 ~ 32082462 (-)
G696499 NA other downstream 179605 31477354 ~ 31478027 (-)
G696073 NA other downstream 802225 30855107 ~ 30855407 (-)
G696068 NA other downstream 810423 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 1595464 30001763 ~ 30062168 (-)
G693665 NA other downstream 2698800 28958395 ~ 28958832 (-)
G697774 LOC106571626 other upstream 795274 32498799 ~ 32499410 (-)
G698356 NA other upstream 1285720 32989245 ~ 32990061 (-)
G699468 NA other upstream 2239497 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 2319766 34017010 ~ 34029131 (-)
G696724 NA non-coding upstream 17280 31697015 ~ 31697216 (-)

Expression


Co-expression Network