LOC110529794 (LOC106608176)


Basic Information

Item Value
gene id LOC110529794
gene name LOC106608176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31951092 ~ 32110879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612328.2
CGGTTACCGAGACGCAGGCTGGTCGTGCCACCTAAATACCTCAACCAGCTATCTGCTGCTCTGCGTTATCCCCTTTGTGCCGCGCTGTGTGATTGTTGCAGAGGATTAGGCTACTCGTTTCTACAAGGTTTTGCTCGGAGCGCAAAATTATCCGGTATAGGTGTTTTGCCAAAAAATCAACTAATTCTGAATTGAACAATGGGCTATtgctttttaattaatttgtccTGGTATGCTTTTAATCCTGTGCTATTTTTCAAGTATTTTAAGGAAGAATGGAAATCGATTCAAGTAAGGACGAATTACGATAGATCAGAACTATAGATTACAGTAAAATTGAGTGAGCGTTCGAGTTTGATTGAAATAACTCAACATAGCCTACATTTGACCAGTTTCGCTGCACCAATATAGTGCCCGTCTTTCAAACTGCTGAGAGACTGGGGAGGTTGTCTTGCACTGAATGAGTCGCTTTGGAACGCGCGCTATCCACAGAGCGAGCCGGTGATGAAAAAGGTCGGGATTGCGATCAGTAGGCTAGCCTATATTGGAAATTAAAAACGATTTTGGAATAATGGTGAAGTGAAAATAAGAACGCCGAAGATGCAACATCTCCTTGGTAGAATACACGATGGACAAATGCCTGCCATGAATGGTGAGAGCGTAACCCGATGAAGTATGATACATGTATATCACATGCAAGGGAGAGCAATTGCCAAGAATTTTCTGGAAGAGGAGAACGAGACGTCAAGGAGGCAGAAAGGACGGTCTTATGATGGTCAGAATGAGCTCAGGAATAAGGCTTTTGCTGAGGTGAAAATAATGGAAGCCTGACCCAAGGAGAATCTTCCACCTGATTATCCATAGCCTGTTCGCTGTTGGCCATTCCCTCTGGTGTGGTGGGAAGAGGCGTGCAGGCTGTGATTGACGGGCGATGCCCCGTGAGTGAACCTATGGCAgtgacacaacacaatacaggTTCCTTTGTGTGACTCTACCATGGACCACATCCTCTGTTGCCTGCTGGTCCTGGGAACCGCAGTGATGATGGCCCATGCATGCCCTAAGTACTGTGTCTGCCAGAACCTATCCGAGTCCCTTGGGACCCTGTGCCCCTCCAAAGGCCTTCTCTTCGTCCCGTTGGACCTCGACCGGCGCACTGTGGAGCTCCGGCTGGGTGGCAACTACATCCTCCGCATCACTCAGCAGGACTTTGCCAACATGACCGACCTGGTGGACCTGACGCTCAGCCGCAACACCATCAGCTACATCCAACCCTTCTCCTTCGGCGACCTGGAGACCCTGCGTTCCTTACACCTGGACAACAACCGCCTCATGGAGCTGGGTCCAGAGGATCTCCGGGGCCTGGTTAACCTGCAGCACCTCATCCTCAACAACAACCAGCTGGGACGCATCTCAGACAGGACCTTCGAAGACCTGGCCCCCTCCCTGGAGGATCTGGATCTGTCCTACAACAACCTGAGGAGCCTGCCCTGGAACTCAGTCAAGCAGATGGTCTCCCTCCATCAGTTGAGTCTTGATCATAACCTCCTGGACTTTATCCCTGAGGGGACCTTTACTAATCTAGAAAGGTTGGCTCGCCTGGATCTCACCTCCAACCGGCTGCAGAAGCTGCCCCCGGACCCCATCTTCGCCAGGGCACAGGATTTGGTGCTGTTGACCACGCCCTACACCCCTCAGCTGTCCCTTAGCATCGGGGGAAACCCCCTGCATTGTAACTGCGAGGTGCTGTGGCTGCGGCGGCTGGAGAGGGACGACGACCTGGAGACCTGCGCTTCCCCTCCCAGCCTGAAAGGGCGCTACTTCTGGTATGTGAGGGAAGAGGAGTTTGTGTGCGAGCCGCCACTCATCACTCAGCACACTCACAAGATGCTGGTGCTGGAGGGCCAGACGGCCAGCCTGAGGTGCGAGGCTGTTGGAGACCCCACCCCTACCATCCACTGGATGGCCCCCGATGACCGTCTCCTTGGCAACTCATCCCGTACCGCCGTCTACCGCAACGGCACCCTGGAAATCCTCATTACCACCTCCAAGGACTACGGTACCTTCACCTGCATCGCTGCCAACGTGGCTGGAGAGTCCACCGCCTCTGTGGAGCTGTCAATCATCCAGCTGCCCCACCTTAGCAACGGCACCAGTCAAGCCTCGCAGCCCAAGTCCCGCCTCTCAGACATCACAGGCACCACTAGGATCAGCAAGGGGGTTCCTAAGAGCCCGCCTGAGAAAGTGGTCACTGTGTCAGAGGTGACAGCCATTTCAGCTCTGGTGAAGTGGACAGTCAGCAAGGCAGCGCCCAAGGTGAAAATGTTTCAGCTCCAGTACAACTGTTCGGACGATGAAGTCCTCATCTACAGGATGATCCCGGCCTCCAGCAATGCCTTCCTGGTGACCAACCTGGTGTCGGGGACAAAGTACGACCTGTGTGTCTTGGCCGCCTGGGACGACACCGCCACCACCCTGACTGCCACCAACGTGGTGGGCTGTGCCCAGTTCTTCACCCGCGATGACTACACCCAGTGCCAGTCTCTCCACAGCCAGTTCCTAGGGGGCACCATGATCCTTGTGGTGGGTGGCATCATCGTGGCGACGCTACTCGTCTTCATCATTATCCTGATGCTGCGCTACAAGGCCACCGACAATGAGGGGGGTGGCACGGGGGCGATCAGCAAGCTGACCAGCGTTAGTGCCACCCACTCACAGACCAATGGGGGCCGGCTGGGACAGAATGGCATGCCTCTGCCCTTGCCCAAACCCAAGGCCAAAGTAACCATCCAAGACGAGGTGGTGGAGTTTAAATGCGGATCCCTCCAGAGCagcctcacctcctcctcttcctcgtcgGGTGGCTCGATGGTTGGGGGTGGCTCTCACAGCCCCAACAGCACCCTGGCCAACATGTGGAGGCAGGCGGCCCCCTCCAAGCCCCGGGCCAACCTGGACCACCTGCTGGGAGCCTTCAACTCCCTAGAGCTCCGGGCGGGCCAGGCCAGGGGTAGGGGAGACCTGGGGGAGCCATCCTCCAGCAGTAGCACTCTAGTGGCGGGCGGCGATAGGCCCCCCACGGACAGGGAGCCCCTGCTGGGCCACACAATGGACTCACGGCTCAGCCGGGTGCTCATGCTGCCTCTAGACTCCAAGCCAAAAAGAAGCCAGTCGTTTGACATGGGGGACTGTATGGATACAAACCGACAAACAGAAAAAGCGATGGCCTCCAGCGCCTCCACGGCCACAACGCCGGTGTGCAGCTACCCCCGGCGCATCAGCAGCATCTGGACTAAGAGGAGCTTGTCTGTGAACGGCATGCTGCTGCAGTGTGACGAGGAGGGTGACATGGGAGGGAGCAAGGGGACCTTCGAGAGCCAAGAGTGGGTCATGGAGAGTACTGTCTAGGAGAGATGGTGACACACTTTACATCTTCTTAAACACTGCCCCAGGAAGGTGGCAAAACGCCTAAGTTCTGATAGACCCACCGGTGAGTGGAGAAGTCCctgcttcctccctccttccttgtTTACATGGAATGAATTCATGTTAATCTATTGTGGATCCACCATTGTTGTGACAGATAAGTAAAGCTCAAACCACACCTCTCGAACCCCAAATGGGTAAATAAGGGTGAAGACGCTCGGTGGACGgagctgattggtggagtgaggatgttttgtttttgtatgtgtgtgttctctacatgGGGAGGGGGGGACGCACAGTAATGGTCAACCACAAACTACAAGTTAGTCATGTAATGAAACCTAGTGGATTGTGCAATTTGTGTGCGGTATGGAGTCACATGGAAACTCAGAAATTGGAAGCAGGCCTGTTGTTCAAAACGAGGGCCTTAGTTTCTCAGACACAAGGAACGTAAAACAAATCACTGTATTTGTTGACTTGTAAAATGGCATACCATAAAAGCCACTCTTGTTACTGTTGCTGAGATGTTGGGCCATGCCTCTGGACTATACTACAGCTGCAAGTTAATCTGAAATATGTCATGAATTTTTATATATTTAATTTTGCCGATCAAGTACACATTGTCTAATACTGTTCTTCGCCTCTGTACAAGATGGGGCTCCGACCTCAATATTTGCATTATGAAAAACCACAATACACAAGTATATCCAGCCACATTGTTTTTATATCCACAGAACCATTTTGTTTCTTAATCCATTTGGACTGAATGGTATTTATATATCAGTGATGTAATGAATccttacaaaaatatataaaaaagatTTCATGAAAACAATGTCTGTgaatatattaactttatatacaGAGTATATATTTGAGGGTTCATTAAATAACTCCATATCTGGTACCCTATCAAGTTGGATTAATGTATAAAGCAAGCAAACAATTTCTCTTTCTTGAAGTTAACAATGTGAAAATGGTAAGGTCGTACGTGAAAATGGAACTGTTATCGTGAATTAACCCAATATAGAGCTCACAACCAGCACAAGTTAACACTCTCCAGCAAGAACGATTGAGCCCCCAGAAAAACTGCAGCTCAACATGCACAATTGTTGAGAGACAAGCATTCTTCTCCAATTCCAAGGAACATTTGTACATGTTTATGAACTTTGATGCACTGACCTTTATTCTCTGTCTGGAACTCATCACCTTAAATGATCGACATTTGAGAGTAAACATACAGCTTGCCATCCTTACCAGTTATTGGCATGAGAAATGTACAGGGAATTCGTACTGAACTATCTGTGTCTAGGAATTGTCCAACCGGATTTTTGGTTTGGTAGCATAAACTCGCAGTGTTACAAAACCCTCCATCTCTTTGTGATCGTGTCAAGACAGCCCTTCAAGAACATGAACTACAACTGATTTAACTTGAGtttacaacaaacaaaaaaactaaaaaagtCCATTGTAAGGTACCATAAACGTACAGTCCACAATGGTTATGCTCTCAACAATGGTGACGTTGTTGGCTTTTCTGTAACGTGTACAACTTGCATGTTTATCGAGGACTAACTCATAAAGACCACGAAGGACCTTATAcactatctctctatctgtcctttCTCACATTGTCTGAATGACTTCCATTGCTtctgtacattgactctgtatactGGCTTTTTTTTTGTACAATAATTGAGTGAGAATGTTCAATGGCGAAAAACAATAATGTATACCAGTGTCTTTCTTTTCTTTGTAAGCATAAAGAAATACAGAGGTGCTTCACTGTATCATTACAGCGTAACCATGTACATTTCTCACCTGGAATTGTAGACAATGTTTCGGTGGTCAAACCTATTGTTTTTTGctacaaaatgaaaaaaataaaataaaataaagatattCTAAAACATT
>XM_021612329.2
acagttgaagtgtacccatgataaaaatgacagacctctacatgctttgTTCCTTTGTGTGACTCTACCATGGACCACATCCTCTGTTGCCTGCTGGTCCTGGGAACCGCAGTGATGATGGCCCATGCATGCCCTAAGTACTGTGTCTGCCAGAACCTATCCGAGTCCCTTGGGACCCTGTGCCCCTCCAAAGGCCTTCTCTTCGTCCCGTTGGACCTCGACCGGCGCACTGTGGAGCTCCGGCTGGGTGGCAACTACATCCTCCGCATCACTCAGCAGGACTTTGCCAACATGACCGACCTGGTGGACCTGACGCTCAGCCGCAACACCATCAGCTACATCCAACCCTTCTCCTTCGGCGACCTGGAGACCCTGCGTTCCTTACACCTGGACAACAACCGCCTCATGGAGCTGGGTCCAGAGGATCTCCGGGGCCTGGTTAACCTGCAGCACCTCATCCTCAACAACAACCAGCTGGGACGCATCTCAGACAGGACCTTCGAAGACCTGGCCCCCTCCCTGGAGGATCTGGATCTGTCCTACAACAACCTGAGGAGCCTGCCCTGGAACTCAGTCAAGCAGATGGTCTCCCTCCATCAGTTGAGTCTTGATCATAACCTCCTGGACTTTATCCCTGAGGGGACCTTTACTAATCTAGAAAGGTTGGCTCGCCTGGATCTCACCTCCAACCGGCTGCAGAAGCTGCCCCCGGACCCCATCTTCGCCAGGGCACAGGATTTGGTGCTGTTGACCACGCCCTACACCCCTCAGCTGTCCCTTAGCATCGGGGGAAACCCCCTGCATTGTAACTGCGAGGTGCTGTGGCTGCGGCGGCTGGAGAGGGACGACGACCTGGAGACCTGCGCTTCCCCTCCCAGCCTGAAAGGGCGCTACTTCTGGTATGTGAGGGAAGAGGAGTTTGTGTGCGAGCCGCCACTCATCACTCAGCACACTCACAAGATGCTGGTGCTGGAGGGCCAGACGGCCAGCCTGAGGTGCGAGGCTGTTGGAGACCCCACCCCTACCATCCACTGGATGGCCCCCGATGACCGTCTCCTTGGCAACTCATCCCGTACCGCCGTCTACCGCAACGGCACCCTGGAAATCCTCATTACCACCTCCAAGGACTACGGTACCTTCACCTGCATCGCTGCCAACGTGGCTGGAGAGTCCACCGCCTCTGTGGAGCTGTCAATCATCCAGCTGCCCCACCTTAGCAACGGCACCAGTCAAGCCTCGCAGCCCAAGTCCCGCCTCTCAGACATCACAGGCACCACTAGGATCAGCAAGGGGGTTCCTAAGAGCCCGCCTGAGAAAGTGGTCACTGTGTCAGAGGTGACAGCCATTTCAGCTCTGGTGAAGTGGACAGTCAGCAAGGCAGCGCCCAAGGTGAAAATGTTTCAGCTCCAGTACAACTGTTCGGACGATGAAGTCCTCATCTACAGGATGATCCCGGCCTCCAGCAATGCCTTCCTGGTGACCAACCTGGTGTCGGGGACAAAGTACGACCTGTGTGTCTTGGCCGCCTGGGACGACACCGCCACCACCCTGACTGCCACCAACGTGGTGGGCTGTGCCCAGTTCTTCACCCGCGATGACTACACCCAGTGCCAGTCTCTCCACAGCCAGTTCCTAGGGGGCACCATGATCCTTGTGGTGGGTGGCATCATCGTGGCGACGCTACTCGTCTTCATCATTATCCTGATGCTGCGCTACAAGGCCACCGACAATGAGGGGGGTGGCACGGGGGCGATCAGCAAGCTGACCAGCGTTAGTGCCACCCACTCACAGACCAATGGGGGCCGGCTGGGACAGAATGGCATGCCTCTGCCCTTGCCCAAACCCAAGGCCAAAGTAACCATCCAAGACGAGGTGGTGGAGTTTAAATGCGGATCCCTCCAGAGCagcctcacctcctcctcttcctcgtcgGGTGGCTCGATGGTTGGGGGTGGCTCTCACAGCCCCAACAGCACCCTGGCCAACATGTGGAGGCAGGCGGCCCCCTCCAAGCCCCGGGCCAACCTGGACCACCTGCTGGGAGCCTTCAACTCCCTAGAGCTCCGGGCGGGCCAGGCCAGGGGTAGGGGAGACCTGGGGGAGCCATCCTCCAGCAGTAGCACTCTAGTGGCGGGCGGCGATAGGCCCCCCACGGACAGGGAGCCCCTGCTGGGCCACACAATGGACTCACGGCTCAGCCGGGTGCTCATGCTGCCTCTAGACTCCAAGCCAAAAAGAAGCCAGTCGTTTGACATGGGGGACTGTATGGATACAAACCGACAAACAGAAAAAGCGATGGCCTCCAGCGCCTCCACGGCCACAACGCCGGTGTGCAGCTACCCCCGGCGCATCAGCAGCATCTGGACTAAGAGGAGCTTGTCTGTGAACGGCATGCTGCTGCAGTGTGACGAGGAGGGTGACATGGGAGGGAGCAAGGGGACCTTCGAGAGCCAAGAGTGGGTCATGGAGAGTACTGTCTAGGAGAGATGGTGACACACTTTACATCTTCTTAAACACTGCCCCAGGAAGGTGGCAAAACGCCTAAGTTCTGATAGACCCACCGGTGAGTGGAGAAGTCCctgcttcctccctccttccttgtTTACATGGAATGAATTCATGTTAATCTATTGTGGATCCACCATTGTTGTGACAGATAAGTAAAGCTCAAACCACACCTCTCGAACCCCAAATGGGTAAATAAGGGTGAAGACGCTCGGTGGACGgagctgattggtggagtgaggatgttttgtttttgtatgtgtgtgttctctacatgGGGAGGGGGGGACGCACAGTAATGGTCAACCACAAACTACAAGTTAGTCATGTAATGAAACCTAGTGGATTGTGCAATTTGTGTGCGGTATGGAGTCACATGGAAACTCAGAAATTGGAAGCAGGCCTGTTGTTCAAAACGAGGGCCTTAGTTTCTCAGACACAAGGAACGTAAAACAAATCACTGTATTTGTTGACTTGTAAAATGGCATACCATAAAAGCCACTCTTGTTACTGTTGCTGAGATGTTGGGCCATGCCTCTGGACTATACTACAGCTGCAAGTTAATCTGAAATATGTCATGAATTTTTATATATTTAATTTTGCCGATCAAGTACACATTGTCTAATACTGTTCTTCGCCTCTGTACAAGATGGGGCTCCGACCTCAATATTTGCATTATGAAAAACCACAATACACAAGTATATCCAGCCACATTGTTTTTATATCCACAGAACCATTTTGTTTCTTAATCCATTTGGACTGAATGGTATTTATATATCAGTGATGTAATGAATccttacaaaaatatataaaaaagatTTCATGAAAACAATGTCTGTgaatatattaactttatatacaGAGTATATATTTGAGGGTTCATTAAATAACTCCATATCTGGTACCCTATCAAGTTGGATTAATGTATAAAGCAAGCAAACAATTTCTCTTTCTTGAAGTTAACAATGTGAAAATGGTAAGGTCGTACGTGAAAATGGAACTGTTATCGTGAATTAACCCAATATAGAGCTCACAACCAGCACAAGTTAACACTCTCCAGCAAGAACGATTGAGCCCCCAGAAAAACTGCAGCTCAACATGCACAATTGTTGAGAGACAAGCATTCTTCTCCAATTCCAAGGAACATTTGTACATGTTTATGAACTTTGATGCACTGACCTTTATTCTCTGTCTGGAACTCATCACCTTAAATGATCGACATTTGAGAGTAAACATACAGCTTGCCATCCTTACCAGTTATTGGCATGAGAAATGTACAGGGAATTCGTACTGAACTATCTGTGTCTAGGAATTGTCCAACCGGATTTTTGGTTTGGTAGCATAAACTCGCAGTGTTACAAAACCCTCCATCTCTTTGTGATCGTGTCAAGACAGCCCTTCAAGAACATGAACTACAACTGATTTAACTTGAGtttacaacaaacaaaaaaactaaaaaagtCCATTGTAAGGTACCATAAACGTACAGTCCACAATGGTTATGCTCTCAACAATGGTGACGTTGTTGGCTTTTCTGTAACGTGTACAACTTGCATGTTTATCGAGGACTAACTCATAAAGACCACGAAGGACCTTATAcactatctctctatctgtcctttCTCACATTGTCTGAATGACTTCCATTGCTtctgtacattgactctgtatactGGCTTTTTTTTTGTACAATAATTGAGTGAGAATGTTCAATGGCGAAAAACAATAATGTATACCAGTGTCTTTCTTTTCTTTGTAAGCATAAAGAAATACAGAGGTGCTTCACTGTATCATTACAGCGTAACCATGTACATTTCTCACCTGGAATTGTAGACAATGTTTCGGTGGTCAAACCTATTGTTTTTTGctacaaaatgaaaaaaataaaataaaataaagatattCTAAAACATT

Function

NR:

description
leucine-rich repeat and fibronectin type-III domain-containing protein 2-like

GO: NA

KEGG:

id description
K16355 LRFN2, SALM1; leucine-rich repeat and fibronectin type-III domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612328.2 False 5346 mRNA 0.49 6 31951092 32110879
XM_021612329.2 True 4419 mRNA 0.50 3 32077132 32110879

Neighbor

gene id symbol gene type direction distance location
LOC110529230 LOC106571642 coding upstream 377519 31550399 ~ 31573573 (+)
stxbp6l LOC106571649 coding upstream 548528 31394194 ~ 31402564 (+)
ddhd1b LOC106571651 coding upstream 558018 31381107 ~ 31393074 (+)
psmc6 prs10 coding upstream 574504 31368752 ~ 31376588 (+)
LOC110529782 LOC106571730 coding upstream 607227 31339232 ~ 31343865 (+)
LOC118965508 NA coding downstream 24317 32135196 ~ 32141382 (+)
LOC110529798 LOC106571640 coding downstream 41822 32152701 ~ 32156250 (+)
LOC110529799 LOC106571639 coding downstream 52442 32163321 ~ 32166068 (+)
LOC110529801 LOC106571636 coding downstream 61333 32172212 ~ 32193704 (+)
LOC110529803 LOC106571638 coding downstream 83328 32194207 ~ 32214087 (+)
G697046 NA non-coding upstream 21220 31929659 ~ 31929872 (+)
G697010 NA non-coding upstream 45113 31905695 ~ 31905979 (+)
G697009 NA non-coding upstream 45690 31905016 ~ 31905402 (+)
G696926 NA non-coding upstream 103397 31847370 ~ 31847695 (+)
G696925 NA non-coding upstream 104095 31846521 ~ 31846997 (+)
G697188 NA non-coding downstream 6906 32117785 ~ 32118016 (+)
G697191 NA non-coding downstream 9881 32120760 ~ 32120964 (+)
G697196 NA non-coding downstream 15570 32126449 ~ 32131747 (+)
G697204 NA non-coding downstream 36687 32147566 ~ 32147966 (+)
G694036 NA other upstream 2158345 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3012819 28930668 ~ 28939888 (+)
G693207 NA other upstream 3245340 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3392719 28495104 ~ 28605625 (+)
G692424 NA other upstream 3880864 28069900 ~ 28070228 (+)
G699605 NA other downstream 2016714 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3343969 35454437 ~ 35462086 (+)
G700685 NA other downstream 3502285 35613164 ~ 35614666 (+)
G700864 NA other downstream 3793170 35904049 ~ 35904698 (+)
G702415 NA other downstream 4589559 36700438 ~ 36700739 (+)

Expression


Co-expression Network