LOC110529796 (LOC106571727)


Basic Information

Item Value
gene id LOC110529796
gene name LOC106571727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32132683 ~ 32135194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612332.2
GCGTAATGAGAAGGCTTCCTGTTTCTGTAAGAGGGTCTGTCGGAGGTTTCTTCCTTTTCAAACTTAAACAATAGCTATATCTTTTGAAGATAATTTGATACAGCTTCTCAGTGTTTCAAATGTATTTACTTGAACAGATTACTACCAAAGTGACAGTTACAAAACTCATACAGCTGCACAGTTCTCACTGGGAGTGTGTTTGAATTAACCCGCAAAGCAAGAATAATCACCAAGCAACTCTGAATACTCTGTGACAAGAACAACCTGTTGACTGGACCAAAAATGTCTTCTGGATTGGAACGTGTCATCCTGTTCTCGATTCTTGGTCTAGGAGAATTTCTGATGCTGTTTTTAATGTACCATAAATCAGTTCCATCTCAGATCTGCCCCCCCGAGCCTGCTTTGCCAGGTCCTTACTCAAAGCGACCTGAGAACAGGTCCTTGTCTAAGCAGCCAGAGCCAGAAAAGCCCATCATGCTGTTGTGGTTCTGGCCTGAAAACCGCAGGTTTGATTTTAGCGATTGTGCCACTTTCTTCAACATTGATGGCTGCCACCTGACAGATGACAGGTCTCTGTACAACAAGGCAGATGGTGTGCTCATCTTTCACAAATCCATCAAACGCGATTTATCCAACTTGCCTCCATCACCTCGACCACCATTCCAGAAGTGGATTTGGTATCACGTAGAATCACCTACAAACACAATTAGGATACCTGGTCTAGATAACCTTTTCAATTTGACCTTGAGTTATAGGGAAGACGCAGACATCCCTGTTCGTTGGCGTTTGACTGCAAGGAAAAGCCAGGGTGAAGACTTTGTGTTGCCAAAGAAGGATAAATTAGTTTGCTGGATTGTGAGTAATAAAGACCCTGCAACTGGAACAGGGGTACGGAATAACTATTACGGAGAACTTGCCAAACATATTAAAGTGGAACTCTTTGGCAAGGCCTTTGCTAGATTCTTGAAATATGAGGACTACTACTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCGGTCCACAAAGACTACATCACAGAGAAGCTAAACGGACCACTTGCAGCAGGAACAGTGCCAGTAGTATTGGGCCCACCGAGACAGAACTATGAAGACTTTGTCCCAGGAGATTCCTTCATCCATATTAATGACTTTCCCGATGCAAAAGCCCTGGCGGAATTCCTCCTCAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACCTTTCTGCTCAGCAACATCTGGTTCAACTGAGTCAAGAGTTCATCCAAGCTATTTGTTATGGATGTGACCATGTAGGACAACACAAAGAATACCGGGTTGTTCACGACCTTTACAAGTGGTATTTTGTGTAATTAGTCACTTATGATGAGCTTTTATCATAATTTGCATGTCTATTATCTTCAATATACCAAAAAGGTatcttgatttattccacagcACATAGGGAGTGCATACACCGCATCGAATGTGTGTTTTAGTGACCAGCCGCAGATGGGTGTCTGCCAACATTTTCGCGAgattctacatgtagaatcacTTTACACTCTGTTTGTACATTACGGCTGGTTCTCTGTTCAGAGGTGTTAAGTACTCTCGGCCGACAGACACTACCGGTGTCTCCGTGCCTTTATACTCACATTTGTCTATGAAAACTTGGTATTGGTAGACTGGcctaatatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatatgaattaatgaaatattca

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612332.2 True 1778 mRNA 0.43 2 32132683 32135194

Neighbor

gene id symbol gene type direction distance location
LOC110529793 LOC106571728 coding downstream 429158 31657632 ~ 31703525 (-)
LOC110529792 LOC106571729 coding downstream 526492 31602683 ~ 31606191 (-)
LOC110529791 LOC106571644 coding downstream 628693 31486817 ~ 31503990 (-)
LOC110529790 LOC106571645 coding downstream 674436 31453334 ~ 31458247 (-)
LOC110529789 LOC105024319 coding downstream 697313 31432392 ~ 31435370 (-)
LOC110529804 ypel5 coding upstream 79257 32214451 ~ 32217572 (-)
bpnt1 bpnt1 coding upstream 133901 32269095 ~ 32278234 (-)
LOC110529808 LOC106571628 coding upstream 150864 32286058 ~ 32287169 (-)
LOC110529806 LOC106571627 coding upstream 153870 32289064 ~ 32301293 (-)
LOC110529812 LOC106571726 coding upstream 170948 32306142 ~ 32322140 (-)
G697544 NA non-coding downstream 6772 32125696 ~ 32125911 (-)
G697541 NA non-coding downstream 11682 32120742 ~ 32121001 (-)
G697513 NA non-coding downstream 48405 32083938 ~ 32084278 (-)
G697511 NA non-coding downstream 50221 32082204 ~ 32082462 (-)
G697011 NA non-coding downstream 226701 31905661 ~ 31905982 (-)
G697555 NA non-coding upstream 14418 32149612 ~ 32149817 (-)
G697559 NA non-coding upstream 22803 32157997 ~ 32158219 (-)
G697560 NA non-coding upstream 23160 32158354 ~ 32158655 (-)
G697561 NA non-coding upstream 24029 32159223 ~ 32160048 (-)
G697604 NA non-coding upstream 89413 32224607 ~ 32224813 (-)
G696499 NA other downstream 654656 31477354 ~ 31478027 (-)
G696073 NA other downstream 1277276 30855107 ~ 30855407 (-)
G696068 NA other downstream 1285474 30846902 ~ 30847209 (-)
G694858 LOC105017690 other downstream 2070515 30001763 ~ 30062168 (-)
G697774 LOC106571626 other upstream 363605 32498799 ~ 32499410 (-)
G698356 NA other upstream 854051 32989245 ~ 32990061 (-)
G699468 NA other upstream 1807828 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 1888097 34017010 ~ 34029131 (-)

Expression


Co-expression Network