LOC118965508


Basic Information

Item Value
gene id LOC118965508
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32135196 ~ 32141382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052855.1
TCAAAGGAAATTAGGGGAGGGGCAAGGTCTTAGCCACAACCAATGAGCATTCATTTTGCCCTTACCTGACCTGGAAGAACCTTCAATCTCTAAGCATATGGAGAATGACTGCCAAGAAGATCTACAAACACATCTGATATCACCTAATAGCTGatgacCTCCACCAACAACTGGTGCCAGAAGCAGAAAGGGAACAGCTGGGAGGCAACATGAGGACATTTGTGATTGCATGGGACAATGTAGCATTCCACAAGTACTCCCCTTTCCTACCCCCtactcccctttcctcccccctacttACCTTTCCTTAACCCCATTGAGGAATGTTTTTCTgtctggaggtggaaagtgtatgatcattggtcacatgaccaaatgtcCCTCCTGGATGCAACAGATGCCAGCTGCAGAGACATCTcagctgaagactgccaggggtgGATAAGGCAGGCCAAGCGTTTCTATCCAAGGCGCATGGCGAGAGACGACATAAGATGTGACGTGGACGAGAATATGTGGCCAAATGCTGAagatggaatagattagaacagGACGGGCATTTTAGTGTTTGATCCCTTCTGTGCCTTTTTTActgtaattgttttatttttacacatttggaaccaaaggccatgtaagttggatgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgcaTGTTgggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgcaTGTTaggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggaggtTTTGTTGATCACTGGCAGCAATTTCTTGTTGCTAATAAAGCTTTTACTGCAGCAA
>TU793497
GGAAGAACCTTCAATCTCTAAGCATATGGAGAATGACTGCCAAGAAGATCTACAAACACATCTGATATCACCTAATAGCTGatgacCTCCACCAACAACTGGTGCCAGAAGCAGAAAGGGAACAGCTGGGAGGCAACATGAGGACATTTGTGATTGCATGGGACAATGTAGCATTCCACAAGTACTCCCCTTTCCTACCCCCtactcccctttcctcccccctacttACCTTTCCTTAACCCCATTGAGGAATGTTTTTCTgtctggaggtggaaagtgtatgatcattggtcacatgaccaaatgtcCCTCCTGGATGCAACAGATGCCAGCTGCAGAGACATCTcagctgaagactgccaggggtgGATAAGGCAGGCCAAGCGTTTCTATCCAAGGCGCATGGCGAGAGACGACATAAGATGTGACGTGGACGAGAATATGTGGCCAAATGCTGAagatggaatagattagaacagGACGGGCATTTTAGTGTTTGATCCCTTCTGTGCCTTTTTTActgtaattgttttatttttacacatttggaaccaaaggccatgtaagttggatgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgcaTGTTgggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgcaTGTTaggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggaggtTTTGTTGATCACTGGCAGCAATTTCTTGTTGCTAATAAAGCTTTTACTGCAGCAA
>TU793498
GGAAGAACCTTCAATCTCTAAGCATATGGAGAATGACTGCCAAGAAGATCTACAAACACATCTGATATCACCTAATAGCTGatgacCTCCACCAACAACTGGTGCCAGAAGCAGAAAGGGAACAGCTGGGAGGCAACATGAGGACATTTGTGATTGCATGGGACAATGTAGCATTCCACAAGTACTCCCCTTTCCTACCCCCtactcccctttcctcccccctacttACCTTTCCTTAACCCCATTGAGGAATGTTTTTCTgtctggaggtggaaagtgtatgatcattggtcacatgaccaaatgtcCCTCCTGGATGCAACAGATGCCAGCTGCAGAGACATCTcagctgaagactgccaggggtgGATAAGGCAGGCCAAGCGTTTCTATCCAAGGCGCATGGCGAGAGACGACATAAGATGTGACGTGGACGAGAATATGTGGCCAAATGCTGAagatggaatagattagaacagGACGGGCATTTTAGTGTTTGATCCCTTCTGTGCCTTTTTTActgtaattgttttatttttacacatttggaaccaaaggccatgcaTGTTgggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgcaTGTTaggtgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggatgtgttgttgaaccaaaggccatgtatgttggaggtTTTGTTGATCACTGGCAGCAATTTCTTGTTGCTAATAAAGCTTTTACTGCAGCAA

Function

NR:

description
uncharacterized protein LOC109967148

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052855.1 False 933 mRNA 0.45 2 32135196 32141382
TU793497 False 861 lncRNA 0.45 2 32135268 32141382
TU793498 True 795 lncRNA 0.45 3 32135268 32141382

Neighbor

gene id symbol gene type direction distance location
LOC110529794 LOC106608176 coding upstream 24317 31951092 ~ 32110879 (+)
LOC110529230 LOC106571642 coding upstream 561623 31550399 ~ 31573573 (+)
stxbp6l LOC106571649 coding upstream 732632 31394194 ~ 31402564 (+)
ddhd1b LOC106571651 coding upstream 742122 31381107 ~ 31393074 (+)
psmc6 prs10 coding upstream 758608 31368752 ~ 31376588 (+)
LOC110529798 LOC106571640 coding downstream 11319 32152701 ~ 32156250 (+)
LOC110529799 LOC106571639 coding downstream 21939 32163321 ~ 32166068 (+)
LOC110529801 LOC106571636 coding downstream 30830 32172212 ~ 32193704 (+)
LOC110529803 LOC106571638 coding downstream 52825 32194207 ~ 32214087 (+)
LOC110529800 LOC106571632 coding downstream 75194 32216576 ~ 32255838 (+)
G697196 NA non-coding upstream 3449 32126449 ~ 32131747 (+)
G697191 NA non-coding upstream 14232 32120760 ~ 32120964 (+)
G697188 NA non-coding upstream 17180 32117785 ~ 32118016 (+)
G697174 NA non-coding upstream 43489 32091450 ~ 32091707 (+)
G697165 NA non-coding upstream 51453 32083527 ~ 32083743 (+)
G697204 NA non-coding downstream 6184 32147566 ~ 32147966 (+)
G697214 NA non-coding downstream 25729 32167111 ~ 32167338 (+)
G697215 NA non-coding downstream 26073 32167455 ~ 32167671 (+)
G697217 NA non-coding downstream 27198 32168580 ~ 32168796 (+)
G697221 ypel5 non-coding downstream 73067 32214449 ~ 32217565 (+)
G694036 NA other upstream 2342449 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3196923 28930668 ~ 28939888 (+)
G693207 NA other upstream 3429444 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3576823 28495104 ~ 28605625 (+)
G692424 NA other upstream 4064968 28069900 ~ 28070228 (+)
G699605 NA other downstream 1986211 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3313466 35454437 ~ 35462086 (+)
G700685 NA other downstream 3471782 35613164 ~ 35614666 (+)
G700864 NA other downstream 3762667 35904049 ~ 35904698 (+)
G702415 NA other downstream 4559056 36700438 ~ 36700739 (+)

Expression


Co-expression Network