XLOC_025775 (sc:d0202)


Basic Information

Item Value
gene id XLOC_025775
gene name sc:d0202
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54776117 ~ 54814530 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050645
GCCGATTTACTCGTCCAAACAAGTATTTAATTCATGTTCTGTTCTGACGGTGAGGCTGCCTGTCTAGTTTTATCTGCGTGACCATTTTGAAAAGTTGTCGATTTTAAGTGAAAGTACTGAAGGCATTTCGCGTTAAGCCATTGTCAACATGTACAGTTTGCTGCCGCGCCTGTggatcctcctcctcctcctgcgtGAAATGTCCCAATGGTTTCATTTCCATAGGTGCTTTTGACTGGGTTAAGTCATATTTATTCGTGATTTGGGTGCGGTTTTTTGGAGTAGCGACTGAAAGGCCATTCGATAGAGTTGACTGTTGTGGCGAGcgggaaatttatttatttatttatcctttcaGGGGTTTCTCGACGCCGCGGGGCTTCAACCTTTACAACATGCTTCAGTGCGTCTTGGGACTTTTCTCCGCGGTAACACTGCTTGTGACTGTCAAAGGTACAAATGCTGAATGTCCTCTTCAAATCAACCCACCTAAACTTGTTGTGAGGTTTAATAGCTCGGCTTCAGCAAACTGCAACACTTCTGTCACACATGATGGGATGGGATGGGAAGCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCTAATCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGAAGATAGAGCCACCATTCTGCTACATAAACTATGGCAAACAGTGTGAAGTACCTCTCCCAGTCACTATTTACAGTGAGTTCCTCTGTAATTATTATCTGTGTCTTTTCATTCTCAGAAATCTCTAATAAATGTAAGTTGATGACTGCAGGTATCAGAGTGTGTGAATCTTCCTCCACAGAGACTCCAGACAGTGTTTCCATCAGCACTGTGAATCAAATAATGACAGAGGGAAACCAGTATGAGCTCCAGTGTGACATTCATAATGTGGCTCCTGCTCAGAATCTCACCATCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTCACTGACAACACCAAGAGTCCagtcaataaaataattagaCTCCTGATCCATCCAGACAGAGCTGATGATGGAGCTCAGTACAGATGTGAAACAGAGCTGAACCTGGGAGTAGAAGGACCTCAACCTCCTcccaaaaacacatcaaaacctCTCAGCATTGATGTTCACTATAAACCACAACACTCCAGTTCAGCAGAGAACATCAGTCAGAGCGATACTGTCTATTTAAACTGTACAGTGAAGGCAAACCCGGCTGCTGTGTACACATGGCACTCAGAGCATCTGAAAGAGAAGATCAGCTCCCCAGTGATCCAGTCCTCCCCACTCAGTCCAGGAAAATACACCTGCACCGCCACAAACGATCTGGGAGCAAGCAGCAAAGTGTTCATCGTCAGTTCTGCAGGAAGGACCACATTCTGGGCCATTGTTATCGCTGGCGTCGTGTTGGCAGTCCTGTTAATCGTTTCCTATGTAATATTCAAGATTAAAAGTCCTCCAAACACTATCATTTAA
>TCONS_00050646
GCCGATTTACTCGTCCAAACAAGTATTTAATTCATGTTCTGTTCTGACGGTGAGGCTGCCTGTCTAGTTTTATCTGCGTGACCATTTTGAAAAGTTGTCGATTTTAAGTGAAAGTACTGAAGGCATTTCGCGTTAAGCCATTGTCAACATGTACAGTTTGCTGCCGCGCCTGTggatcctcctcctcctcctgcgtGAAATGTCCCAATGGTTTCATTTCCATAGGTGCTTTTGACTGGGTTAAGTCATATTTATTCGTGATTTGGGTGCGGTTTTTTGGAGTAGCGACTGAAAGGCCATTCGATAGAGTTGACTGTTGTGGCGAGcgggaaatttatttatttatttatcctttcaGGGGTTTCTCGACGCCGCGGGGCTTCAACCTTTACAACATGCTTCAGTGCGTCTTGGGACTTTTCTCCGCGGTAACACTGCTTGTGACTGTCAAAGGTATAAATGCTGAATGTCCTCTTAAGATCATGCCAACAAAACTTGTTGTGAGGTTTAATAGTTCAGCTTCAGCTGACTGCAGCACTTCTGTCACACATGATGGGATGGGATGGGAATCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCTAATCTGATCACATGGAGAGTGTCACAGCTGACATACTGGGAGATACAGCCACCATACTGCTACATAAACTATGGCAAACAGTGTGAAGTAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCCATCAGCACTGTGAATCAAATAATGATGGAGGGAAACCAGTATGAGCTCCAGTGTGACATTCACAACGTTGCTCCTGCTCAGAATCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAGCTTTTCTGACACAATCAAGAGACCAGTCAGTAAAACATCTAAACTCATGATCCATCCAGACAGAGCTGATGATGGAACTCAGTACAGATGTGAAACAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCTCATCCCAAAAACACATCAACACCTCTCAGCATTGAAGTTCACTATAAACCAAAACACTCCAGTTCAGCAGAGTACATCAGTCAGAGCGATACTGTCTATCTAAACTGTACAGTGAAGGCAAACCCGGCTGCTGTGTACACATGGCACTCAGAGCATCTGACAGAGAAGATCAGCTCCTCAGTGATCCAGTCTTCCACACTCAGTCCAGGAAACTACACCTGCACCGCCACAAACGATCTGGGAGCCGACAGCAAAGAGTTCATCGTCAGTTCTGCAGGCTGGACCACAATATGGGCTATTGTTATAGCTGCTGTCGTGTTGGCAGTCCTGTTGGCAGTCATCTCTTTTGTAGTATTCAAGATTAAATGTCGTCAAAACTATGCTGTTCAATGA
>TCONS_00050647
GGGTTTCTCGACGCCGCGGGGCTTCAACCTTTACAACATGCTTCAGTGCGTCTTGGGACTTTTCTCCGCGGTAACACTGCTTGTGACTGTCAAAGGTACAAATGCTGAATGTCCTCTTCAAATCAACCCACCTAAACTTGTTGTGAGGTTTAATAGCTCGGCTTCAGCAAACTGCAACACTTCTGTCACACATGATGGGATGGGATGGGAAGCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCTAATCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGAAGATAGAGCCACCATTCTGCTACATAAACTATGGCAAACAGTGTGAAGTACCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCCATCAGCACTGTGAATCAAATAATGACAGAGGGAAACCAGTATGAGCTCCAGTGTGACATTCATAATGTGGCTCCTGCTCAGAATCTCACCATCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTCACTGACAACACCAAGAGTCCagtcaataaaataattagaCTCCTGATCCATCCAGACAGAGCTGATGATGGAGCTCAGTACAGATGTGAAACAGAGCTGAACCTGGGAGTAGAAGGACCTCAACCTCCTcccaaaaacacatcaaaacctCTCAGCATTGATGTTCACTATAAACCACAACACTCCAGTTCAGCAGAGAACATCAGTCAGAGCGATACTGTCTATTTAAACTGTACAGTGAAGGCAAACCCGGCTGCTGTGTACACATGGCACTCAGAGCATCTGAAAGAGAAGATCAGCTCCCCAGTGATCCAGTCCTCCCCACTCAGTCCAGGAAAATACACCTGCACCGCCACAAACGATCTGGGAGCAAGCAGCAAAGTGTTCATCGTCAGTTCTGCAGGAAGGACCACATTCTGGGCCATTGTTATCGCTGGCGTCGTGTTGGCAGTCCTGTTAATCGTTTCCTATGTAATATTCAAGATTAAAAGTCCTCCAAACACTATCATTTAATGAACTTGCAAGAGATGACCTCAAAGC

Function

symbol description
sc:d0202 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); biliary atresia; inflammatory bowel disease (multiple); liver cirrhosis; and uveitis (multiple). Orthologous to several human genes including ICAM2 (intercellular adhesion molecule 2).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080226-9 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); biliary atresia; inflammatory bowel disease (multiple); liver cirrhosis; and uveitis (multiple). Orthologous to several human genes including ICAM2 (intercellular adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000095312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050645 False 1488 mRNA 0.45 4 54776117 54791664
TCONS_00050646 False 1388 mRNA 0.45 5 54776117 54814530
TCONS_00050647 True 1051 mRNA 0.46 5 54776475 54791691

Neighbor

gene id symbol gene type direction distance location
XLOC_025774 si:ch211-74m13.1 coding upstream 4308 54761569 ~ 54771809 (+)
XLOC_025773 icam3 coding upstream 23753 54744069 ~ 54752364 (+)
XLOC_025772 eif3g coding upstream 186294 54581987 ~ 54589823 (+)
XLOC_025771 p2ry11 coding upstream 198132 54572725 ~ 54577985 (+)
XLOC_025770 ppan coding upstream 208156 54553931 ~ 54567961 (+)
XLOC_025776 NA coding downstream 19979 54834509 ~ 54836517 (+)
XLOC_025777 mgrn1b coding downstream 34553 54849083 ~ 54875874 (+)
XLOC_025778 aanat2 coding downstream 73252 54887782 ~ 54893706 (+)
XLOC_025779 mpg coding downstream 217155 55031685 ~ 55043150 (+)
XLOC_025780 hbaa2 coding downstream 279051 55093581 ~ 55094399 (+)
XLOC_025429 BX649540.1 misc upstream 24527081 30248739 ~ 30249036 (+)
XLOC_025769 NA non-coding upstream 439478 54332726 ~ 54336639 (+)
XLOC_025768 NA non-coding upstream 472493 54289678 ~ 54303624 (+)
XLOC_025767 NA non-coding upstream 491932 54283767 ~ 54284185 (+)
XLOC_025766 NA non-coding upstream 504772 54270703 ~ 54271345 (+)
XLOC_025765 NA non-coding upstream 664145 54111389 ~ 54111972 (+)
XLOC_025787 CT583658.1 non-coding downstream 484513 55299043 ~ 55299158 (+)
XLOC_025788 NA non-coding downstream 571685 55386215 ~ 55387657 (+)
XLOC_025789 NA non-coding downstream 667590 55482120 ~ 55488241 (+)
XLOC_025790 NA non-coding downstream 832343 55646873 ~ 55654264 (+)

Expression


Co-expression Network