LOC110529803 (LOC106571638)


Basic Information

Item Value
gene id LOC110529803
gene name LOC106571638
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32194207 ~ 32214087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612340.2
CTAGTGGGTATTGCGTTCAATGAACGCCATTTTGATTCTGTTGATACGGCACAGTACATTTTATTCTAAATGAAGGTCTAGGTACCGGTAGTTTCCTGAACAGCTTACTTCGTACAGTTCGGCCCACTGAAGATTGGGGGACGCAGCACATGGTGTTGGACAAAGCGTTAACACCCCCTCTGTGGCTGTTAGTAGTAGCCGAGCTCCAGCTGATTGCTTTGAGTCCAGTGAGGACACTTGGATGATCAATTAATCCAAACTGAGCTGTTTAGGACTATTCGGATCCCTGTGGCCGCTCGTGTCGGCAAAGCCATCCACCTTCGTTGTCCAATTTGACCACCGAGGACTATTTATAGAAGCGGATATTTGCTACTTGAGTTGGCTGAAGATCCTTTACAACGACAAGGCCCCTGTCTCATCCCCAGCTTTGCGTACCCTTGATCATTTTGTTGAAGTCATGGGGGATACTGGTAGTGAGCGCAGCAAACCCTTACCACCTCGGTGTCCATGTGGATTTTGGGGGTCCAGTAAAACCATGAACCTCTGCTCAAAATGTTTTGCTGATATCGAGCAGAAGCAGACAGATGAGGACTGTACCTCAAAGCCCAGCCCAAGCACTGGCAGTAGCCAATTGTCTGTCTTCAGTGGCGAGACGAGCAGCAACAGTAGCCAATCCCTATCGTCGTCACCACCCACTAGCTCTGAGCAGCCATCGGTGTCAACCGAAGACCCTGTCCCCACATTACCAACTACACAGGAGGGAGTATCGTCATGCACAGAAACAGCCCAAGGCACCCTCTGTACACCCACAAAACGTCCTTGCGAATCAGCTTCAGGGTCGGAGAGCGAGGCGTCACCAGAGAAACGGGCACGGCGGGACTTGGAGGGGGAGGCGGCGAGCGAGGAGCCTAGCCGAGGACCCAAGCAGAAAAACCGCCGGCGCTGCTATCGCTGCCAAACCAAACTGGAGCTGGTACAGCAGGAACTGGGATCCTGTCGCTGCGGCTACGTGTTCTGCATGCTCCACCGTCTACCTGAGCAGCACGACTGCCTGTTCGACCACCTGGGACGTGGGCGCGAGGAGGCCGTCCTCAAGATGGTGAAGCTGGACCGCAAGGTGGGCCGCTCGTGCCAACGCATCGGAGAAGAGTGCTCTTGAGTTGCCCCCGCTGCCCGCCCGTCACCACCCATCCACACAACAGAGAAGCGGCACTTAAATAGAGAGGGGGACGTAAGAGAGagcaaggaagagagggagggaaggggaagaaggagagagcatGGTTGTAATAGATCCACACTTACCCCACCATTCTGGAGCTGAGGGTTGTTGACCCACTCCTGTTAGTCTTGACCCCTCCAGAGGGGAACAGTTTGGACACTGCCTTGGACACGGTCACCATGGCAACCTCTGGAGCCACACTGTCACTATCGCACGTTCGTTTTCACACAGCCTTAACTTgtcagaggggtatactacaaagcaggatcaattgGTTAGCCAGCTATCTTTGATGAACAAACAGAATTAACTATTGATTTTCAGGTTCAATTAAGAAAGCTCAACTTAGCTATGTGTTTTTGGTTGAGTAAATTGGACCATGCCCATTTCAAGCTTATCTTTCTAAAGAATTAAGTTATTTCACAATATTTACACGTTAGCTGgcaaactattttttttatttttaatcacaCAGCAGCGCCATCGCTCAACAACAATCTTACCCCTCAAGTCTTTGTTTCACTGTTCACAAAAGATTAGTCTGCACCAGTACTTTCTAAATGAAACTGACCTCTTTCTCGGCTCCTTGGTCATCTTGGTAAGCAGGTTTTCAGTACATCGTTGGTGACAGATAAACGGAACATAGCCCTGTCTGTCCCTTGACCACTCCTCAGGTTGTAGGGTGGAATGTTgacctttacccccccccccccccccctccccctcttccttttcTGCTCCCTCCTCACCCAATGTCTCCTGCATGGCATTGGATTGAAATAGCGTGTGTTAAGGACGTCGTCGTCCCCGGACATGGGTCAGTTGTTGTGTGGCCATGTTTGTTCTTATGAGACTGCTAGACTGGTTTGACTACAAACCGGACCACAAACCCTTGTACTGCAGCCTTCCTCCTCCGCTTCTCTCAGCTGGATTAGAGTCTGAACAAATGGActagagtcacacacacagaacctCTCTGAAGCAGAAGCCCTTCTCTGCCTGCTGCTCTTTGAATAAGTGATGCTGTTGCTGTTAATGCTCTCCTTCTGTTTTGTAATACCCTGTGCACTCTTACTCCCTTTATTtttacatacacactacacaatcCCTGACTCACTGGACTGTCAAACTATGGCTCTATTCGTATGGCCATACAAGCAGACCACTTAAAAAGCATGCATAATACAttgcttcattttttttttttgtagtatGCTAGTCTGTTCCATATTTTACTCCTCCTACCCCAGTCACACTACTTGAGTGTGCTGGTCCCAATGCTCATCTCATTCTTCTTCCTCACTTCCCTCTCTGCTTCCTTCTCTTACTGGCCCCCTTCCTCCGGTGCGAGGAATGACTGAAGGATGGCAGGAGCGACGTGTAGAGTGGCATAGTGGGTGGTTTCATTTTGGTATTTCTGCGACCCGTCATCTCTCGAGTGCCGATGGGGAAAATTTAAGAAATGTTATCTTTCTGTATCTTAAAAGAAATTTTATTTAACCATATATTATTTTGATTTACTTACACATTAGCATATagctgcatatttagttaaatgtATAAAACCAGAACAATTGTTTTATGTTCTCcttttatttgattattttccCCTTTTTGCTGAGGATGAATAAACTGGATTAGAGGAATTGGGTGGCCTGTGTGATCTTTAAAACATTTGAATTATTTCATTAAAATAAGGGTAAACATTTTGCATTATTTTCTACAGAAACTGAAAAGCAGTTCATCAAAACAAGTGAAAATGGAAAGTGTGAACCTGATTCTATGGAAAATTTTGCAAATGTCTGTAACGAaaaataaaaagctctctaaaaTAGACAAC
>XM_021612341.2
CAATGAACGCCATTTTGATTCTGTTGATACGGCACAGTACATTTTATTCTAAATGAAGGTCTAGGTACCGGTAGTTTCCTGAACAGCTTACTTCGTACAGTTCGGCCCACTGAAGATTGGGGGACGCAGCACATGGTGTCCAGTAAAACCATGAACCTCTGCTCAAAATGTTTTGCTGATATCGAGCAGAAGCAGACAGATGAGGACTGTACCTCAAAGCCCAGCCCAAGCACTGGCAGTAGCCAATTGTCTGTCTTCAGTGGCGAGACGAGCAGCAACAGTAGCCAATCCCTATCGTCGTCACCACCCACTAGCTCTGAGCAGCCATCGGTGTCAACCGAAGACCCTGTCCCCACATTACCAACTACACAGGAGGGAGTATCGTCATGCACAGAAACAGCCCAAGGCACCCTCTGTACACCCACAAAACGTCCTTGCGAATCAGCTTCAGGGTCGGAGAGCGAGGCGTCACCAGAGAAACGGGCACGGCGGGACTTGGAGGGGGAGGCGGCGAGCGAGGAGCCTAGCCGAGGACCCAAGCAGAAAAACCGCCGGCGCTGCTATCGCTGCCAAACCAAACTGGAGCTGGTACAGCAGGAACTGGGATCCTGTCGCTGCGGCTACGTGTTCTGCATGCTCCACCGTCTACCTGAGCAGCACGACTGCCTGTTCGACCACCTGGGACGTGGGCGCGAGGAGGCCGTCCTCAAGATGGTGAAGCTGGACCGCAAGGTGGGCCGCTCGTGCCAACGCATCGGAGAAGAGTGCTCTTGAGTTGCCCCCGCTGCCCGCCCGTCACCACCCATCCACACAACAGAGAAGCGGCACTTAAATAGAGAGGGGGACGTAAGAGAGagcaaggaagagagggagggaaggggaagaaggagagagcatGGTTGTAATAGATCCACACTTACCCCACCATTCTGGAGCTGAGGGTTGTTGACCCACTCCTGTTAGTCTTGACCCCTCCAGAGGGGAACAGTTTGGACACTGCCTTGGACACGGTCACCATGGCAACCTCTGGAGCCACACTGTCACTATCGCACGTTCGTTTTCACACAGCCTTAACTTgtcagaggggtatactacaaagcaggatcaattgGTTAGCCAGCTATCTTTGATGAACAAACAGAATTAACTATTGATTTTCAGGTTCAATTAAGAAAGCTCAACTTAGCTATGTGTTTTTGGTTGAGTAAATTGGACCATGCCCATTTCAAGCTTATCTTTCTAAAGAATTAAGTTATTTCACAATATTTACACGTTAGCTGgcaaactattttttttatttttaatcacaCAGCAGCGCCATCGCTCAACAACAATCTTACCCCTCAAGTCTTTGTTTCACTGTTCACAAAAGATTAGTCTGCACCAGTACTTTCTAAATGAAACTGACCTCTTTCTCGGCTCCTTGGTCATCTTGGTAAGCAGGTTTTCAGTACATCGTTGGTGACAGATAAACGGAACATAGCCCTGTCTGTCCCTTGACCACTCCTCAGGTTGTAGGGTGGAATGTTgacctttacccccccccccccccccctccccctcttccttttcTGCTCCCTCCTCACCCAATGTCTCCTGCATGGCATTGGATTGAAATAGCGTGTGTTAAGGACGTCGTCGTCCCCGGACATGGGTCAGTTGTTGTGTGGCCATGTTTGTTCTTATGAGACTGCTAGACTGGTTTGACTACAAACCGGACCACAAACCCTTGTACTGCAGCCTTCCTCCTCCGCTTCTCTCAGCTGGATTAGAGTCTGAACAAATGGActagagtcacacacacagaacctCTCTGAAGCAGAAGCCCTTCTCTGCCTGCTGCTCTTTGAATAAGTGATGCTGTTGCTGTTAATGCTCTCCTTCTGTTTTGTAATACCCTGTGCACTCTTACTCCCTTTATTtttacatacacactacacaatcCCTGACTCACTGGACTGTCAAACTATGGCTCTATTCGTATGGCCATACAAGCAGACCACTTAAAAAGCATGCATAATACAttgcttcattttttttttttgtagtatGCTAGTCTGTTCCATATTTTACTCCTCCTACCCCAGTCACACTACTTGAGTGTGCTGGTCCCAATGCTCATCTCATTCTTCTTCCTCACTTCCCTCTCTGCTTCCTTCTCTTACTGGCCCCCTTCCTCCGGTGCGAGGAATGACTGAAGGATGGCAGGAGCGACGTGTAGAGTGGCATAGTGGGTGGTTTCATTTTGGTATTTCTGCGACCCGTCATCTCTCGAGTGCCGATGGGGAAAATTTAAGAAATGTTATCTTTCTGTATCTTAAAAGAAATTTTATTTAACCATATATTATTTTGATTTACTTACACATTAGCATATagctgcatatttagttaaatgtATAAAACCAGAACAATTGTTTTATGTTCTCcttttatttgattattttccCCTTTTTGCTGAGGATGAATAAACTGGATTAGAGGAATTGGGTGGCCTGTGTGATCTTTAAAACATTTGAATTATTTCATTAAAATAAGGGTAAACATTTTGCATTATTTTCTACAGAAACTGAAAAGCAGTTCATCAAAACAAGTGAAAATGGAAAGTGTGAACCTGATTCTATGGAAAATTTTGCAAATGTCTGTAACGAaaaataaaaagctctctaaaaTAGACAAC

Function

NR:

description
AN1-type zinc finger protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612340.2 False 3062 mRNA 0.47 7 32194207 32214087
XM_021612341.2 True 2677 mRNA 0.47 6 32194224 32214087

Neighbor

gene id symbol gene type direction distance location
LOC110529801 LOC106571636 coding upstream 503 32172212 ~ 32193704 (+)
LOC110529799 LOC106571639 coding upstream 28139 32163321 ~ 32166068 (+)
LOC110529798 LOC106571640 coding upstream 37957 32152701 ~ 32156250 (+)
LOC118965508 NA coding upstream 52825 32135196 ~ 32141382 (+)
LOC110529794 LOC106608176 coding upstream 83328 31951092 ~ 32110879 (+)
LOC110529800 LOC106571632 coding downstream 2489 32216576 ~ 32255838 (+)
LOC110529802 ppp1cb coding downstream 42231 32256318 ~ 32268368 (+)
grcc10 cssa15h12orf57 coding downstream 73077 32287164 ~ 32289011 (+)
LOC110529813 LOC106571626 coding downstream 281342 32495429 ~ 32503490 (+)
LOC110529231 LOC106571626 coding downstream 289051 32503138 ~ 32516734 (+)
G697217 NA non-coding upstream 25411 32168580 ~ 32168796 (+)
G697215 NA non-coding upstream 26536 32167455 ~ 32167671 (+)
G697214 NA non-coding upstream 26869 32167111 ~ 32167338 (+)
G697204 NA non-coding upstream 46241 32147566 ~ 32147966 (+)
G697221 ypel5 non-coding downstream 362 32214449 ~ 32217565 (+)
G697242 NA non-coding downstream 10602 32224689 ~ 32225047 (+)
G697260 NA non-coding downstream 70195 32284282 ~ 32284505 (+)
G697270 NA non-coding downstream 89809 32303896 ~ 32304102 (+)
G697280 NA non-coding downstream 107353 32321440 ~ 32322745 (+)
G694036 NA other upstream 2401460 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3255934 28930668 ~ 28939888 (+)
G693207 NA other upstream 3488455 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3635834 28495104 ~ 28605625 (+)
G692424 NA other upstream 4123979 28069900 ~ 28070228 (+)
G699605 NA other downstream 1913506 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3240761 35454437 ~ 35462086 (+)
G700685 NA other downstream 3399077 35613164 ~ 35614666 (+)
G700864 NA other downstream 3689962 35904049 ~ 35904698 (+)
G702415 NA other downstream 4486351 36700438 ~ 36700739 (+)

Expression


Co-expression Network