Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529804 |
| gene name | ypel5 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 32214451 ~ 32217572 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ypel5 | Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5). |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: protein yippee-like 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612343.2 | False | 1600 | mRNA | 0.45 | 3 | 32214451 | 32217570 |
| XM_021612342.2 | False | 1623 | mRNA | 0.45 | 3 | 32214451 | 32217572 |
| TU793919 | False | 1565 | TUCP | 0.46 | 3 | 32214486 | 32217549 |
| TU793920 | True | 1521 | TUCP | 0.45 | 4 | 32214486 | 32217549 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529796 | LOC106571727 | coding | downstream | 79257 | 32132683 ~ 32135194 (-) |
| LOC110529793 | LOC106571728 | coding | downstream | 510926 | 31657632 ~ 31703525 (-) |
| LOC110529792 | LOC106571729 | coding | downstream | 608260 | 31602683 ~ 31606191 (-) |
| LOC110529791 | LOC106571644 | coding | downstream | 710461 | 31486817 ~ 31503990 (-) |
| LOC110529790 | LOC106571645 | coding | downstream | 756204 | 31453334 ~ 31458247 (-) |
| bpnt1 | bpnt1 | coding | upstream | 51523 | 32269095 ~ 32278234 (-) |
| LOC110529808 | LOC106571628 | coding | upstream | 68486 | 32286058 ~ 32287169 (-) |
| LOC110529806 | LOC106571627 | coding | upstream | 71492 | 32289064 ~ 32301293 (-) |
| LOC110529812 | LOC106571726 | coding | upstream | 88570 | 32306142 ~ 32322140 (-) |
| LOC118965610 | NA | coding | upstream | 199900 | 32417472 ~ 32421085 (-) |
| G697561 | NA | non-coding | downstream | 54403 | 32159223 ~ 32160048 (-) |
| G697560 | NA | non-coding | downstream | 55796 | 32158354 ~ 32158655 (-) |
| G697559 | NA | non-coding | downstream | 56232 | 32157997 ~ 32158219 (-) |
| G697555 | NA | non-coding | downstream | 64634 | 32149612 ~ 32149817 (-) |
| G697544 | NA | non-coding | downstream | 88540 | 32125696 ~ 32125911 (-) |
| G697604 | NA | non-coding | upstream | 7035 | 32224607 ~ 32224813 (-) |
| G697632 | ppp1cb | non-coding | upstream | 37949 | 32255521 ~ 32268603 (-) |
| G697642 | NA | non-coding | upstream | 67318 | 32284890 ~ 32285129 (-) |
| G697643 | NA | non-coding | upstream | 85298 | 32302870 ~ 32303081 (-) |
| G697644 | NA | non-coding | upstream | 85585 | 32303157 ~ 32305119 (-) |
| G696499 | NA | other | downstream | 736424 | 31477354 ~ 31478027 (-) |
| G696073 | NA | other | downstream | 1359044 | 30855107 ~ 30855407 (-) |
| G696068 | NA | other | downstream | 1367242 | 30846902 ~ 30847209 (-) |
| G694858 | LOC105017690 | other | downstream | 2152283 | 30001763 ~ 30062168 (-) |
| G697774 | LOC106571626 | other | upstream | 281227 | 32498799 ~ 32499410 (-) |
| G698356 | NA | other | upstream | 771673 | 32989245 ~ 32990061 (-) |
| G699468 | NA | other | upstream | 1725450 | 33943022 ~ 33952356 (-) |
| ankef1a | LOC106571587 | other | upstream | 1805719 | 34017010 ~ 34029131 (-) |
| G701454 | NA | other | upstream | 3365426 | 35582998 ~ 35589877 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_017787 | NA | non-coding | NC_007131.7 | CM002904.2 | 84692 ~ 116999 (-) |
| grasscarp (Ctenopharyngodon idella) | G124961 | NA | non-coding | CI01000024 | null | 6693450 ~ 6693721 (-) |
| grasscarp (Ctenopharyngodon idella) | CI01000135_00158065_00158568 | YPEL5, BRAFLDRAFT_262914, YPELB | coding | CI01000135 | null | 157415 ~ 158568 (-) |
