LOC110529802 (ppp1cb)


Basic Information

Item Value
gene id LOC110529802
gene name ppp1cb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32256318 ~ 32268368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612339.2
AGCCTGAGTGAACCAAAATAAACTACACCGTTTGTACAGTAGTAGACCACGCCCTCTGCTGGTGAGCACGACGTAGTTCTCTCTGCGTAGTAGTTTTTAGTGTTTCAAAGAAAATGGCGGAAAGCGAGCTCAACGTTGACAGCATCATCTCTCGATTGCTTGAAGTACGAGGATGTCGTCCAGGGAAGATAGTCCAGATGACGGAGGCGGAGGTGCGGGGGTTGTGCATCAAGTCCCGGGAGATCTTCCTCAGTCAGCCCATTCTACTGGAGCTGGAGGCTCCGCTCAAAATCTGCGGTGATATCCATGGCCAGTACACAGACCTGCTGCGGCTCTTTGAGTACGGGGGCTTCCCGCCGGAGGCTAACTACCTTTTCCTGGGAGACTACGTGGACCGAGGCAAGCAGTCCCTGGAGACCATCTGTCTACTGCTGGCCTACAAGATCAAATACCCCGAGAACTTCTTCCTACTCAGAGGCAACCACGAGTGTGCTTCCATCAACCGCATCTACGGTTTCTATGATGAGTGCAAACGCAGATTCAACATAAAGCTGTGGAAGACCTTCACAGATTGCTTCAACTGTCTGCCCATCGCCGCTATAATCGATGAGAAGATCTTCTGCTGCCATGGAGGTCTCTCTCCTGATCTACAGTCCATGGAGCAAATTCGACGCATCATGAGGCCAACTGATGTCCCTGACACAGGACTGCTGTGTGATCTGCTGTGGTCGGATCCAGACAAAGACGTGCAGGGATGGGGGGAAAACGACCGGGGTGTCTCCTTCACCTTTGGGGCTGACGTGGTCAGCAAGTTCCTCAACCGCCACGACCTGGACCTCATCTGCAGAGCCCACCAGGTTGTTGAGGACGGCTATGAGTTTTTTGCCAAACGGCAGCTGGTGACGCTGTTCTCGGCTCCCAACTACTGCGGGGAGTTTGATAACGCTGGGGGCATGATGAGCGTTGACGAGTCCCTCATGTGTTCCTTTCAGATTTTGAAGCCGTCAGAGAAAAAAGCTAAGTACCAGTATGGAGGGGTGAACTCGGGACGCCCCGTAACCCCGCCCCGTACTGCCCAAGCCCCCAAGAAGAGGTGAGCGTCTGGCCCCCCTCCCCCCCGTCACGCATCCTCCTCGCACCCTTTCCCctgctgtcccctccctcccatctatAGGAAGCGCTCTAGCCCCCCCTGACCCCCACTCACCTCTTTCATATATGTGTAAAACATAAAATCTTTGCTGTGaacttttgtttttttattcataaTGACTTGTGGATTTTCAATGCTATGAAATGTGTTGCTCAGGTTAAGGTGCAGCAATACGATACAAACCTTTTGTGGAAAGGGGCAACACATTTGGAACGGACGCTTTTCTGCCTTCAATGAAACATAGTAAAAAGTATAGCTTATTATTTGAGTGAGGTGGGTTCTTTACCCCCAGCCAACAACGTTAATTCTTCCAGACCTATAACGTTTCCAGACCCTTGCATTTTCCCTGCTAATGCGTATGTAACCTTCTCACAATATTACTAATAACATGTCATTTTCCTCCCACATTTTGGCTACAGTAACTGATTGGAATGGTTTAGCCTCCTAGTGAGTTTGGAGAATGTCATTTTCACCCTGTTGGACTCAATGTTCTCTTTATGCGGACACTAATGAAGTTTTAACAAAATTACTTTGAAAGTACCCATACAAATGCATATGATCAGAACCATACAAAATGATGGTATATACACACACGGGGCATGTATTGCGTACACATTCTATACAGAGAAGTACTAGTACAGTTAAGGTTGTGTGTACTAACTCAAAGGGCTCACAAATGGGTGTTCCAAATGCCTGTTGGTTTTGTTATGGACATTGTTTTTACTGTATGCCTGTGAGAATGCATAGATGGTTGTGGCTTGGGAAGTTAAAGGCAAGACATTCAAGGCACCTGGTTTCAATTGGTGTTCAGTAGCCTATtatttttctcacacacacacgaccaGTTGGCCACAAGACTATTTCCATTTTTTAAGTGCTATTTTCAGCATTGCCCCTGCAGTTATTGTAAACATGAAATATTACACAAGGAGGTCAGCTCATGTTTACCAAGCTAGCAGAGATGGCACTTTTTACTCGGCAGTGTCAGTTACTTAGACATTGCTGCCCCCTAGAGGTAGATTGACCGCCTAAAGAGGTTGAAGACATCAACAACAAGCAAGGCATCAGAATGCATGAGCCAGTGAGTATATCTACTTGGTGGACCCTTTCCTGTATGCTGATTCCAATATCTGGTTCAGAATTATTATTCTCATCCAACTAATGAGCTTACTAAGGAATATTTGAAATAACATTTTAGTTTGAGTTAGGGCATATCTTGCCTTTTGCCTTGTTCTCATTTATCGGTCTCTATTCAAGTTGGAAACTGTCATTGTTTTTAAACAGTTTTGAGATTTGTACAAGTTTGTTTCAGAATCtttgaatggaataaatggaacagtgCTGTTGACCCTG

Function

symbol description
ppp1cb Enables protein heterodimerization activity. Acts upstream of or within convergent extension involved in axis elongation and liver development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).

NR:

description
Serine/threonine-protein phosphatase PP1-beta catalytic subunit

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612339.2 True 2506 mRNA 0.46 8 32256318 32268368

Neighbor

gene id symbol gene type direction distance location
LOC110529800 LOC106571632 coding upstream 480 32216576 ~ 32255838 (+)
LOC110529803 LOC106571638 coding upstream 42231 32194207 ~ 32214087 (+)
LOC110529801 LOC106571636 coding upstream 62614 32172212 ~ 32193704 (+)
LOC110529799 LOC106571639 coding upstream 90250 32163321 ~ 32166068 (+)
LOC110529798 LOC106571640 coding upstream 100068 32152701 ~ 32156250 (+)
grcc10 cssa15h12orf57 coding downstream 18796 32287164 ~ 32289011 (+)
LOC110529813 LOC106571626 coding downstream 227061 32495429 ~ 32503490 (+)
LOC110529231 LOC106571626 coding downstream 234770 32503138 ~ 32516734 (+)
LOC110529815 LOC106571624 coding downstream 271890 32540258 ~ 32544145 (+)
rps7 LOC106608110 coding downstream 414064 32682432 ~ 32686606 (+)
G697242 NA non-coding upstream 31271 32224689 ~ 32225047 (+)
G697221 ypel5 non-coding upstream 38753 32214449 ~ 32217565 (+)
G697217 NA non-coding upstream 87522 32168580 ~ 32168796 (+)
G697215 NA non-coding upstream 88647 32167455 ~ 32167671 (+)
G697214 NA non-coding upstream 88980 32167111 ~ 32167338 (+)
G697260 NA non-coding downstream 15914 32284282 ~ 32284505 (+)
G697270 NA non-coding downstream 35528 32303896 ~ 32304102 (+)
G697280 NA non-coding downstream 53072 32321440 ~ 32322745 (+)
G697281 NA non-coding downstream 54398 32322766 ~ 32323116 (+)
G697282 NA non-coding downstream 54977 32323345 ~ 32323708 (+)
G694036 NA other upstream 2463571 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3318045 28930668 ~ 28939888 (+)
G693207 NA other upstream 3550566 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3697945 28495104 ~ 28605625 (+)
G692424 NA other upstream 4186090 28069900 ~ 28070228 (+)
G699605 NA other downstream 1859225 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3186480 35454437 ~ 35462086 (+)
G700685 NA other downstream 3344796 35613164 ~ 35614666 (+)
G700864 NA other downstream 3635681 35904049 ~ 35904698 (+)
G702415 NA other downstream 4432070 36700438 ~ 36700739 (+)

Expression


Co-expression Network