grcc10 (cssa15h12orf57)


Basic Information

Item Value
gene id grcc10
gene name cssa15h12orf57
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32287164 ~ 32289011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612357.2
CCAGGCGTACGTAATGACGTAATGGCGAGTCGTAAAGCGTCACTCCCCACCACCcagctgacaagcaaaacatttctTGCTAAGCTGTTTGTATTTATTCAACTGCTATATTACATATAATGGCCTCAGCTCCAGCCCAGCAGCCCACCCTCACTGTTGAGCAGGCCAGAGTAGTGCTGAGTGAGGTCATCCAGGCCTTCTCTGTGCCAGAGAATGCAGCACGGATGGAGGAGGCACGGGAGAGTGCCTGCAACGACATGGGCAAGATGCTGCAGCTGGTGCTCCCTGTGGCCACCCAGATCCAACAGGAGGTCATCAAAGCATATGGCTTCAACAACGAGGGAGAGGGTGTCCTTAAATTTGCCCGTCTGGTGAAGATGTATGAAACTCAGGACCCAGAGATAGCAGCCATGTCCATCAAACTGAAGTCTCTTCTCCTGCCTCACCTGTCCACTCCACCCATAGGTGGTGCCATCACAGCTTCCTAGGAAACTCGCCTTGGTCTCTCAGAAGGGACATCTAAAAAAATGTTACTGGACTTGAAAATGTGTGTGCATTGTCAATTTCATAAagtatctctttttttttttcaatcaatCATAGGAAAAAGTGAATTGGCTACCTTGGTATATCACCCTGGGATAATGCACACAAATCAGACCTGTATTGGTTCAAATGAAAACAAAATGTCAATTGCAACCTCCAACCAGGATAGACAAATTTCATTCTTCAAAGTTTAGTTATTGCATTCCTGGATTTAAATGCAATACACCTGACAGCTAACTTAAATCCTTTGTTTATGAGTATTTGTTTtccgtatttatttattttgcattTTGTCTTAAGTCATTTATACCATAATTTACTGTTGGACCTTTTCAATCTGTCACTGCTGGATAAGAGTTAATAcatgtaataaaaaaataaaatgcta
>XM_021612358.2
CCAGGCGTACGTAATGACGTAATGGCGAGTCGTAAAGCGTCACTCCCCACCACCcagctgacaagcaaaacatttctTGCTAAGCTGTTTGTATTTATTCAACTGCTATATTACATATAATGGCCTCAGCTCCAGCCCAGCAGCCCACCCTCACTGTTGAGCAGGCCAGAGTGCTGAGTGAGGTCATCCAGGCCTTCTCTGTGCCAGAGAATGCAGCACGGATGGAGGAGGCACGGGAGAGTGCCTGCAACGACATGGGCAAGATGCTGCAGCTGGTGCTCCCTGTGGCCACCCAGATCCAACAGGAGGTCATCAAAGCATATGGCTTCAACAACGAGGGAGAGGGTGTCCTTAAATTTGCCCGTCTGGTGAAGATGTATGAAACTCAGGACCCAGAGATAGCAGCCATGTCCATCAAACTGAAGTCTCTTCTCCTGCCTCACCTGTCCACTCCACCCATAGGTGGTGCCATCACAGCTTCCTAGGAAACTCGCCTTGGTCTCTCAGAAGGGACATCTAAAAAAATGTTACTGGACTTGAAAATGTGTGTGCATTGTCAATTTCATAAagtatctctttttttttttcaatcaatCATAGGAAAAAGTGAATTGGCTACCTTGGTATATCACCCTGGGATAATGCACACAAATCAGACCTGTATTGGTTCAAATGAAAACAAAATGTCAATTGCAACCTCCAACCAGGATAGACAAATTTCATTCTTCAAAGTTTAGTTATTGCATTCCTGGATTTAAATGCAATACACCTGACAGCTAACTTAAATCCTTTGTTTATGAGTATTTGTTTtccgtatttatttattttgcattTTGTCTTAAGTCATTTATACCATAATTTACTGTTGGACCTTTTCAATCTGTCACTGCTGGATAAGAGTTAATAcatgtaataaaaaaataaaatgcta

Function

NR:

description
protein C10 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612357.2 False 934 mRNA 0.43 4 32287164 32289011
XM_021612358.2 True 931 mRNA 0.43 4 32287164 32289011

Neighbor

gene id symbol gene type direction distance location
LOC110529802 ppp1cb coding upstream 18796 32256318 ~ 32268368 (+)
LOC110529800 LOC106571632 coding upstream 31326 32216576 ~ 32255838 (+)
LOC110529803 LOC106571638 coding upstream 73077 32194207 ~ 32214087 (+)
LOC110529801 LOC106571636 coding upstream 93460 32172212 ~ 32193704 (+)
LOC110529799 LOC106571639 coding upstream 121096 32163321 ~ 32166068 (+)
LOC110529813 LOC106571626 coding downstream 206418 32495429 ~ 32503490 (+)
LOC110529231 LOC106571626 coding downstream 214127 32503138 ~ 32516734 (+)
LOC110529815 LOC106571624 coding downstream 251247 32540258 ~ 32544145 (+)
rps7 LOC106608110 coding downstream 393421 32682432 ~ 32686606 (+)
LOC118965652 NA coding downstream 394688 32683699 ~ 32683923 (+)
G697260 NA non-coding upstream 2659 32284282 ~ 32284505 (+)
G697242 NA non-coding upstream 62117 32224689 ~ 32225047 (+)
G697221 ypel5 non-coding upstream 69599 32214449 ~ 32217565 (+)
G697217 NA non-coding upstream 118368 32168580 ~ 32168796 (+)
G697215 NA non-coding upstream 119493 32167455 ~ 32167671 (+)
G697270 NA non-coding downstream 14885 32303896 ~ 32304102 (+)
G697280 NA non-coding downstream 32429 32321440 ~ 32322745 (+)
G697281 NA non-coding downstream 33755 32322766 ~ 32323116 (+)
G697282 NA non-coding downstream 34334 32323345 ~ 32323708 (+)
G697284 NA non-coding downstream 35863 32324874 ~ 32325083 (+)
G694036 NA other upstream 2494417 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3348891 28930668 ~ 28939888 (+)
G693207 NA other upstream 3581412 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3728791 28495104 ~ 28605625 (+)
G692424 NA other upstream 4216936 28069900 ~ 28070228 (+)
G699605 NA other downstream 1838582 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3165837 35454437 ~ 35462086 (+)
G700685 NA other downstream 3324153 35613164 ~ 35614666 (+)
G700864 NA other downstream 3615038 35904049 ~ 35904698 (+)
G702415 NA other downstream 4411427 36700438 ~ 36700739 (+)

Expression


Co-expression Network